Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr13g0295201 Lupinus albus HOM05D004193 ORTHO05D004862 4.0e-129 465.7 445 100.0
Ca_17907_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 9.6e-99 364.8 387 79.8
Psat7g069000 Pisum sativum HOM05D004193 ORTHO05D004862 1.3e-98 364.4 386 86.5
Ca_00456_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 6.5e-95 352.1 387 84.2
Medtr2g016620 Medicago truncatula HOM05D004193 ORTHO05D004862 1.1e-94 351.3 386 81.6
TPR.G6739 Trifolium pratense HOM05D004193 ORTHO05D004862 9.3e-94 348.2 387 81.9
Medtr8g086590 Medicago truncatula HOM05D004193 ORTHO05D004862 2.7e-93 346.7 387 84.2
Phvul.006G174100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 3.7e-90 336.3 387 74.9
VMungo0540G1249 Vigna mungo HOM05D004193 ORTHO05D004862 6.2e-90 335.5 385 80.3
Glyma.13G227700 Glycine max HOM05D004193 ORTHO05D004862 1.8e-89 334.0 389 77.4
Lalb_Chr18g0054701 Lupinus albus HOM05D004193 ORTHO05D004862 5.3e-89 332.4 385 76.6
Lj4g0003170 Lotus japonicus HOM05D004193 ORTHO05D004862 1.7e-87 327.4 391 76.7
TPR.G4517 Trifolium pratense HOM05D004193 ORTHO05D004862 1.7e-87 327.4 319 85.0
Glyma.15G084800 Glycine max HOM05D004193 ORTHO05D004862 2.9e-87 326.6 385 78.2
Lalb_Chr15g0086241 Lupinus albus HOM05D004193 ORTHO05D004862 7.1e-86 322.0 387 72.9
ClCG01G023850 Citrullus lanatus HOM05D004193 ORTHO05D004862 1.2e-85 321.2 390 72.6
arahy.Tifrunner.gnm1.ann1.XVCK9B Arachis hypogaea HOM05D004193 ORTHO05D004862 1.9e-83 313.9 386 82.6
MELO3C007203.2 Cucumis melo HOM05D004193 ORTHO05D004862 5.7e-83 312.4 393 70.2
arahy.Tifrunner.gnm1.ann1.G2PW3U Arachis hypogaea HOM05D004193 ORTHO05D004862 3.7e-82 309.7 319 81.5
arahy.Tifrunner.gnm1.ann1.PWB2GB Arachis hypogaea HOM05D004193 ORTHO05D004862 4.8e-82 309.3 320 81.2
Manes.17G058300 Manihot esculenta HOM05D004193 ORTHO05D004862 8.2e-82 308.5 388 75.0
MD10G1276600 Malus domestica HOM05D004193 ORTHO05D004862 3.1e-81 306.6 387 69.5
Lj6g0022713 Lotus japonicus HOM05D004193 ORTHO05D004862 2.0e-80 303.9 385 72.7
MELO3C002671.2 Cucumis melo HOM05D004193 ORTHO05D004862 1.9e-78 297.4 390 71.5
CANSAT21G2377 Cannabis sativa HOM05D004193 ORTHO05D004862 3.2e-78 296.6 390 73.1
ClCG03G007510 Citrullus lanatus HOM05D004193 ORTHO05D004862 3.6e-77 293.1 383 70.5
CsaV3_1G033160 Cucumis sativus L. HOM05D004193 ORTHO05D004862 1.0e-76 291.6 383 72.1
Sed0000562 Sechium edule HOM05D004193 ORTHO05D004862 1.0e-76 291.6 387 71.8
QL05p048361 Quercus lobata HOM05D004193 ORTHO05D004862 3.0e-76 290.0 383 68.9
CiPaw.09G072000 Carya illinoinensis HOM05D004193 ORTHO05D004862 3.9e-76 289.7 387 68.7
Nn3g21120 Nelumbo nucifera HOM05D004193 ORTHO05D004862 3.9e-76 289.7 384 71.9
Cfa000640 Carpinus fangiana HOM05D004193 ORTHO05D004862 8.8e-76 288.5 385 71.9
FAN25G3279 Fragaria x ananassa HOM05D004193 ORTHO05D004862 8.8e-76 288.5 381 71.9
Potri.011G069500 Populus trichocarpa HOM05D004193 ORTHO05D004862 1.1e-75 288.1 382 77.7
Haze_06190 Corylus avellana HOM05D004193 ORTHO05D004862 1.5e-75 287.7 383 72.6
FvH4_3g07430 Fragaria vesca HOM05D004193 ORTHO05D004862 2.5e-75 287.0 381 71.4
FAN11G0786 Fragaria x ananassa HOM05D004193 ORTHO05D004862 2.5e-75 287.0 381 71.4
Nn1g04504 Nelumbo nucifera HOM05D004193 ORTHO05D004862 2.5e-75 287.0 383 71.0
FAN16G2064 Fragaria x ananassa HOM05D004193 ORTHO05D004862 4.3e-75 286.2 381 72.2
Sc05g0007000 Simmondsia chinensis HOM05D004193 ORTHO05D004862 9.7e-75 285.0 383 66.1
TAR626G1977 Trochodendron aralioides HOM05D004193 ORTHO05D004862 9.7e-75 285.0 387 71.1
FAN21G2979 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.3e-74 284.6 381 71.7
Sabra11G0057200 Salix brachista HOM05D004193 ORTHO05D004862 1.3e-74 284.6 388 74.7
Duzib235G0429 Durio zibethinus HOM05D004193 ORTHO05D004862 1.7e-74 284.3 387 71.8
Potri.004G059500 Populus trichocarpa HOM05D004193 ORTHO05D004862 1.7e-74 284.3 384 73.2
Gohir.A06G132500 Gossypium hirsutum HOM05D004193 ORTHO05D004862 2.2e-74 283.9 392 71.4
Sabra11G0053600 Salix brachista HOM05D004193 ORTHO05D004862 4.8e-74 282.7 385 75.1
Gohir.D06G138100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 6.3e-74 282.3 392 71.4
PSO541G1278 Papaver somniferum HOM05D004193 ORTHO05D004862 8.2e-74 282.0 388 66.0
Aqoxy1G02001 Aquilegia oxysepala HOM05D004193 ORTHO05D004862 1.4e-73 281.2 385 67.3
Duzib160G0263 Durio zibethinus HOM05D004193 ORTHO05D004862 1.4e-73 281.2 383 70.0
PSO675G2498 Papaver somniferum HOM05D004193 ORTHO05D004862 2.4e-73 280.4 386 66.6
Gorai.010G160400 Gossypium raimondii HOM05D004193 ORTHO05D004862 3.1e-73 280.0 392 71.7
Sabra04G0038500 Salix brachista HOM05D004193 ORTHO05D004862 5.3e-73 279.3 384 70.3
Dinv12762 Davidia involucrata HOM05D004193 ORTHO05D004862 2.6e-72 276.9 321 73.2
Sed0018737 Sechium edule HOM05D004193 ORTHO05D004862 4.5e-72 276.2 387 64.6
Gorai.011G038000 Gossypium raimondii HOM05D004193 ORTHO05D004862 5.9e-72 275.8 381 75.6
Atru.chr10.1586 Acer truncatum HOM05D004193 ORTHO05D004862 7.7e-72 275.4 383 70.2
PGSC0003DMG400026750 Solanum tuberosum HOM05D004193 ORTHO05D004862 2.2e-71 273.9 387 68.5
Gohir.D10G036100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 3.8e-71 273.1 381 75.6
Oeu039891.1 Olea europaea HOM05D004193 ORTHO05D004862 3.8e-71 273.1 388 69.6
Duzib192G1038 Durio zibethinus HOM05D004193 ORTHO05D004862 6.5e-71 272.3 383 75.7
Dinv32348 Davidia involucrata HOM05D004193 ORTHO05D004862 1.1e-70 271.6 319 73.4
Ciclev10015277m.g Citrus clementina HOM05D004193 ORTHO05D004862 1.9e-70 270.8 383 76.0
Nitab4.5_0002458g0090 Nicotiana tabacum HOM05D004193 ORTHO05D004862 1.9e-70 270.8 388 68.6
Ah.09g233350 Amaranthus hybridus HOM05D004193 ORTHO05D004862 4.2e-70 269.6 387 71.3
SalBow8G4302 Salvia bowleyana HOM05D004193 ORTHO05D004862 5.5e-70 269.2 391 74.2
Oeu041745.1 Olea europaea HOM05D004193 ORTHO05D004862 7.2e-70 268.9 388 69.3
arahy.Tifrunner.gnm1.ann1.3H0WIW Arachis hypogaea HOM05D004193 ORTHO05D004862 1.2e-69 268.1 297 80.5
Thecc.06G167100 Theobroma cacao HOM05D004193 ORTHO05D004862 1.2e-69 268.1 385 74.8
PGR042G3004 Punica granatum HOM05D004193 ORTHO05D004862 1.6e-69 267.7 388 69.6
Sopen03g002060 Solanum pennellii HOM05D004193 ORTHO05D004862 2.1e-69 267.3 387 69.5
Nitab4.5_0000462g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 2.7e-69 266.9 388 67.0
Peaxi162Scf00734g00053 Petunia axillaris HOM05D004193 ORTHO05D004862 2.7e-69 266.9 388 71.6
TWI09G0810 Tripterygium wilfordii HOM05D004193 ORTHO05D004862 1.0e-68 265.0 386 64.0
Gohir.A05G154000 Gossypium hirsutum HOM05D004193 ORTHO05D004862 3.0e-68 263.5 387 68.2
Cpa.g.sc7.100 Carica papaya HOM05D004193 ORTHO05D004862 3.9e-68 263.1 387 71.3
Sed0009063 Sechium edule HOM05D004193 ORTHO05D004862 8.8e-68 261.9 387 63.6
RcHm_v2.0_Chr5g0011431 Rosa chinensis HOM05D004193 ORTHO05D004862 1.5e-67 261.2 320 74.7
AUR62027707 Chenopodium quinoa HOM05D004193 ORTHO05D004862 3.3e-67 260.0 383 70.5
Gohir.D05G156801 Gossypium hirsutum HOM05D004193 ORTHO05D004862 3.3e-67 260.0 387 65.9
Migut.M01015 Erythranthe guttata HOM05D004193 ORTHO05D004862 1.3e-66 258.1 398 61.6
MSTRG.16163 Avicennia marina HOM05D004193 ORTHO05D004862 6.3e-66 255.8 389 64.5
Nitab4.5_0000437g0190 Nicotiana tabacum HOM05D004193 ORTHO05D004862 6.3e-66 255.8 390 67.9
Solyc02g072250.1 Solanum lycopersicum HOM05D004193 ORTHO05D004862 6.3e-66 255.8 390 66.4
CAN.G866.27 Capsicum annuum HOM05D004193 ORTHO05D004862 8.2e-66 255.4 386 65.8
CsaV3_6G051010 Cucumis sativus L. HOM05D004193 ORTHO05D004862 1.1e-65 255.0 321 73.5
Sopen02g021230 Solanum pennellii HOM05D004193 ORTHO05D004862 1.2e-64 251.5 390 65.9
Gohir.A10G035400 Gossypium hirsutum HOM05D004193 ORTHO05D004862 2.0e-64 250.8 317 73.8
SGA_v2.0_scaffold1G00068 Striga asiatica HOM05D004193 ORTHO05D004862 2.6e-64 250.4 394 67.5
Phvul.002G240100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 8.5e-63 245.4 395 65.8
PGSC0003DMG401028427 Solanum tuberosum HOM05D004193 ORTHO05D004862 1.1e-62 245.0 374 67.6
AUR62039461 Chenopodium quinoa HOM05D004193 ORTHO05D004862 1.5e-62 244.6 378 67.7
Manes.16G042000 Manihot esculenta HOM05D004193 ORTHO05D004862 7.2e-62 242.3 191 63.4
DCAR_003990 Daucus carota HOM05D004193 ORTHO05D004862 1.2e-61 241.5 387 69.5
MSTRG.7422 Avicennia marina HOM05D004193 ORTHO05D004862 1.6e-61 241.1 392 59.7
CAN.G411.59 Capsicum annuum HOM05D004193 ORTHO05D004862 4.7e-61 239.6 390 67.7
Lsat_1_v5_gn_1_108121 Lactuca sativa HOM05D004193 ORTHO05D004862 2.3e-60 237.3 386 68.1
Ah.14g087050 Amaranthus hybridus HOM05D004193 ORTHO05D004862 3.9e-60 236.5 321 69.5
Cc02_g15470 Coffea canephora HOM05D004193 ORTHO05D004862 1.3e-58 231.5 321 70.4
Eucgr.E02765 Eucalyptus grandis HOM05D004193 ORTHO05D004862 1.3e-58 231.5 353 65.7
HanXRQChr10g0316731 Helianthus annuus HOM05D004193 ORTHO05D004862 2.2e-58 230.7 390 68.2
THA.LOC104798441 Tarenaya hassleriana HOM05D004193 ORTHO05D004862 2.2e-58 230.7 393 66.9
DCAR_027987 Daucus carota HOM05D004193 ORTHO05D004862 6.3e-58 229.2 386 64.5
Aa31LG6G1470 Aethionema arabicum HOM05D004193 ORTHO05D004862 1.8e-57 227.6 391 69.1
HPP92_011510 Vanilla planifolia HOM05D004193 ORTHO05D004862 2.4e-57 227.3 386 59.1
Sp7g17460 Schrenkiella parvula HOM05D004193 ORTHO05D004862 3.5e-56 223.4 394 69.5
C01p12740 Brassica napus HOM05D004193 ORTHO05D004862 2.2e-55 220.7 394 68.8
BolC1t01251H Brassica oleracea HOM05D004193 ORTHO05D004862 2.2e-55 220.7 394 69.0
Rhsim13G0188600 Rhododendron simsii HOM05D004193 ORTHO05D004862 2.2e-55 220.7 392 60.2
Thhalv10025247m.g Eutrema salsugineum HOM05D004193 ORTHO05D004862 2.9e-55 220.3 392 62.2
BcaB04g18496 Brassica carinata HOM05D004193 ORTHO05D004862 3.8e-55 219.9 396 60.6
CARHR225610 Cardamine hirsuta HOM05D004193 ORTHO05D004862 1.1e-54 218.4 394 61.4
ATR0012G050 Amborella trichopoda HOM05D004193 ORTHO05D004862 1.9e-54 217.6 380 65.0
BcaNung05916 Brassica carinata HOM05D004193 ORTHO05D004862 2.5e-54 217.2 389 69.4
AL7G35490 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 3.2e-54 216.9 396 61.9
BcaC01g00565 Brassica carinata HOM05D004193 ORTHO05D004862 5.5e-54 216.1 396 60.6
C03p81450 Brassica napus HOM05D004193 ORTHO05D004862 5.5e-54 216.1 396 60.6
BolC3t20416H Brassica oleracea HOM05D004193 ORTHO05D004862 5.5e-54 216.1 396 60.6
AT4G18760 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 1.2e-53 214.9 396 61.6
A08p13970 Brassica napus HOM05D004193 ORTHO05D004862 4.7e-53 213.0 396 60.6
BraA08t33388Z Brassica rapa HOM05D004193 ORTHO05D004862 4.7e-53 213.0 396 60.6
Psat1g195760 Pisum sativum HOM05D004193 ORTHO05D004862 5.2e-52 209.5 284 86.3
BcaC09g51473 Brassica carinata HOM05D004193 ORTHO05D004862 7.5e-51 205.7 385 68.3
Lsat_1_v5_gn_7_24240 Lactuca sativa HOM05D004193 ORTHO05D004862 1.3e-50 204.9 389 58.4
SEGI_04477 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 1.3e-47 194.9 394 56.3
Peaxi162Scf00371g00032 Petunia axillaris HOM05D004193 ORTHO05D004862 3.8e-47 193.4 331 63.4
ECA236G4320 Erigeron canadensis HOM05D004193 ORTHO05D004862 7.2e-46 189.1 391 57.3
arahy.Tifrunner.gnm1.ann1.EP0JTS Arachis hypogaea HOM05D004193 ORTHO05D004862 9.4e-46 188.7 279 76.3
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 1.2e-45 188.3 388 65.5
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 4.7e-45 186.4 389 66.3
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 4.7e-45 186.4 389 66.3
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 1.0e-44 185.3 389 66.1
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 2.6e-43 180.6 388 64.4
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 2.8e-42 177.2 380 65.3
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 8.3e-42 175.6 375 38.9
Sp2g10680 Schrenkiella parvula HOM05D004193 ORTHO05D004862 5.4e-41 172.9 374 67.4
A09p43700 Brassica napus HOM05D004193 ORTHO05D004862 7.0e-41 172.6 198 52.0
BraA01t01950Z Brassica rapa HOM05D004193 ORTHO05D004862 3.3e-38 163.7 193 49.7
AL8G12840 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 1.2e-37 161.8 400 59.0
unitig_8.g4593 Utricularia gibba HOM05D004193 ORTHO05D004862 6.1e-37 159.5 170 51.8
MBI07_g09546_MAGBIO Magnolia biondii HOM05D004193 ORTHO05D004862 6.8e-36 156.0 263 66.9
Carub.0008s0222 Capsella rubella HOM05D004193 ORTHO05D004862 1.2e-35 155.2 401 60.3
HanXRQChr15g0480781 Helianthus annuus HOM05D004193 ORTHO05D004862 2.6e-35 154.1 330 64.8
Zm00001eb153350 Zea mays HOM05D004193 ORTHO05D004862 4.4e-35 153.3 397 50.9
AT5G45770 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 5.7e-35 152.9 403 58.6
Solyc03g006050.4 Solanum lycopersicum HOM05D004193 ORTHO05D004862 6.3e-34 149.4 124 62.1
Prupe.4G065600 Prunus persica HOM05D004193 ORTHO05D004862 1.0e-31 142.1 387 38.8
CDE02G0812 Ceratophyllum demersum HOM05D004193 ORTHO05D004862 3.9e-31 140.2 340 50.0
Lj1A1174T75 Lonicera japonica HOM05D004193 ORTHO05D004862 6.6e-31 139.4 278 76.3
CARHR176210 Cardamine hirsuta HOM05D004193 ORTHO05D004862 3.6e-29 133.7 398 49.2
SEGI_20269 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 4.9e-26 123.2 204 40.7
VMungo1185G0001 Vigna mungo HOM05D004193 ORTHO05D004862 4.9e-26 123.2 125 55.2
CSS0049237 Camellia sinensis var. sinensis HOM05D004193 ORTHO05D004862 8.3e-26 122.5 258 68.2
SMO198G0035 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 8.3e-26 122.5 199 39.7
COL.COLO4_31255 Corchorus olitorius HOM05D004193 ORTHO05D004862 2.7e-24 117.5 248 83.1
SMO198G0069 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 1.6e-21 108.2 406 53.7
Glyma.05G159900 Glycine max HOM05D004193 ORTHO05D004862 4.1e-17 93.6 107 65.4
BraA07t30082Z Brassica rapa HOM05D004193 ORTHO05D004862 3.9e-15 87.0 172 40.7
Cfa015344 Carpinus fangiana HOM05D001136 ORTHO05D001144 1.8e-12 78.2 54 66.7
AagrBONN_evm.TU.Sc2ySwM_362.2880 Anthoceros agrestis HOM05D004193 ORTHO05D004862 6.8e-12 76.3 196 30.6
Ah.02g117850 Amaranthus hybridus HOM05D004193 ORTHO05D004862 4.4e-11 73.6 98 49.0
Cfa019730 Carpinus fangiana HOM05D004193 ORTHO05D004862 4.4e-11 73.6 54 63.0
Os01g0750400 Oryza sativa ssp. japonica HOM05D004193 ORTHO05D004862 5.8e-11 73.2 251 54.6
Actinidia35595 Actinidia chinensis HOM05D004193 ORTHO05D004862 7.6e-11 72.8 87 52.9
unitig_8.g4592 Utricularia gibba HOM05D004193 ORTHO05D004862 9.9e-11 72.4 100 46.0
Nitab4.5_0008526g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 1.3e-10 72.0 91 52.7
HanXRQChr09g0245841 Helianthus annuus HOM05D004193 ORTHO05D004862 4.6e-08 63.5 51 56.9
HanXRQChr09g0243731 Helianthus annuus HOM05D004193 ORTHO05D004862 1.7e-07 61.6 50 58.0
AL2G35820 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 9.6e-06 55.8 46 58.7
AL6G39660 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 9.6e-06 55.8 46 58.7
HanXRQChr04g0116951 Helianthus annuus HOM05D004193 ORTHO05D004862 9.6e-06 55.8 42 59.5


User provided reference genes

Program Settings