Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr13g0290271 Lupinus albus HOM05D005218 ORTHO05D006657 3.4e-250 867.8 432 100.0
arahy.Tifrunner.gnm1.ann1.6F524X Arachis hypogaea HOM05D005218 ORTHO05D006657 3.1e-203 711.8 437 81.5
arahy.Tifrunner.gnm1.ann1.M7CUXC Arachis hypogaea HOM05D005218 ORTHO05D006657 9.1e-203 710.3 437 81.7
Ca_23103_v3 Cicer arietinum L. HOM05D005218 ORTHO05D006657 3.8e-201 704.9 437 81.9
Glyma.03G000700 Glycine max HOM05D005218 ORTHO05D006657 5.0e-201 704.5 440 81.1
Glyma.16G222300 Glycine max HOM05D005218 ORTHO05D006657 1.9e-200 702.6 437 81.2
VMungo0331G1207 Vigna mungo HOM05D005218 ORTHO05D006657 4.7e-199 698.0 436 79.8
Phvul.010G060400 Phaseolus vulgaris HOM05D005218 ORTHO05D006657 2.0e-197 692.6 436 79.4
Medtr8g005040 Medicago truncatula HOM05D005218 ORTHO05D006657 4.4e-189 664.8 438 76.9
Potri.016G143700 Populus trichocarpa HOM05D005218 ORTHO05D006657 1.8e-187 659.4 430 75.6
QL07p030229 Quercus lobata HOM05D005218 ORTHO05D006657 3.5e-186 655.2 435 74.0
Atru.chr8.19_Atru.chr8.20 Acer truncatum HOM05D005218 ORTHO05D006657 1.2e-183 646.7 435 74.7
Ciclev10011748m.g Citrus clementina HOM05D005218 ORTHO05D006657 1.6e-183 646.4 434 74.0
CANSAT21G2189 Cannabis sativa HOM05D005218 ORTHO05D006657 2.7e-183 645.6 435 73.1
Cfa016978 Carpinus fangiana HOM05D005218 ORTHO05D006657 1.4e-182 643.3 435 73.6
GSVIVG01029830001 Vitis vinifera HOM05D005218 ORTHO05D006657 1.4e-182 643.3 433 73.4
Dinv16915 Davidia involucrata HOM05D005218 ORTHO05D006657 2.3e-182 642.5 435 73.1
TWI74G0252 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 5.2e-182 641.3 435 73.8
Manes.08G165900 Manihot esculenta HOM05D005218 ORTHO05D006657 8.8e-182 640.6 435 72.9
Manes.09G119600 Manihot esculenta HOM05D005218 ORTHO05D006657 8.8e-182 640.6 435 72.9
Hma1.2p1_1020F.1_g248500 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 1.2e-181 640.2 435 73.3
COL.COLO4_20050 Corchorus olitorius HOM05D005218 ORTHO05D006657 3.3e-181 638.6 432 73.8
Eucgr.K01318 Eucalyptus grandis HOM05D005218 ORTHO05D006657 1.3e-180 636.7 435 72.4
Cc06_g00030 Coffea canephora HOM05D005218 ORTHO05D006657 1.7e-180 636.3 435 72.9
TAR369G0292 Trochodendron aralioides HOM05D005218 ORTHO05D006657 3.7e-180 635.2 435 73.8
TWI77G0041 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 1.1e-179 633.6 435 72.9
Duzib268G1588 Durio zibethinus HOM05D005218 ORTHO05D006657 4.1e-179 631.7 436 73.2
Prupe.6G300700 Prunus persica HOM05D005218 ORTHO05D006657 7.0e-179 630.9 433 71.1
Thecc.04G061600 Theobroma cacao HOM05D005218 ORTHO05D006657 1.2e-178 630.2 436 72.7
Gohir.A02G000400 Gossypium hirsutum HOM05D005218 ORTHO05D006657 2.0e-178 629.4 431 73.8
Gorai.005G001100 Gossypium raimondii HOM05D005218 ORTHO05D006657 4.5e-178 628.2 431 73.3
CAN.G455.1 Capsicum annuum HOM05D005218 ORTHO05D006657 1.0e-177 627.1 437 70.7
Gohir.D02G000700 Gossypium hirsutum HOM05D005218 ORTHO05D006657 1.3e-177 626.7 431 73.1
Peaxi162Scf00374g00623 Petunia axillaris HOM05D005218 ORTHO05D006657 1.3e-177 626.7 435 69.4
CSS0045446 Camellia sinensis var. sinensis HOM05D005218 ORTHO05D006657 2.2e-177 625.9 435 70.6
Solyc10g074690.2 Solanum lycopersicum HOM05D005218 ORTHO05D006657 1.5e-176 623.2 435 69.9
RcHm_v2.0_Chr3g0459311 Rosa chinensis HOM05D005218 ORTHO05D006657 4.2e-176 621.7 431 72.4
PGR004G2278 Punica granatum HOM05D005218 ORTHO05D006657 7.2e-176 620.9 435 70.6
Aqoxy2G00608 Aquilegia oxysepala HOM05D005218 ORTHO05D006657 2.1e-175 619.4 435 70.8
Sopen10g027170 Solanum pennellii HOM05D005218 ORTHO05D006657 2.7e-175 619.0 435 69.4
MD04G1181300 Malus domestica HOM05D005218 ORTHO05D006657 6.1e-175 617.8 434 69.8
MD12G1196200 Malus domestica HOM05D005218 ORTHO05D006657 8.0e-175 617.5 435 70.1
Lsat_1_v5_gn_8_108900 Lactuca sativa HOM05D005218 ORTHO05D006657 1.2e-173 613.6 436 68.3
Ah.04g166670 Amaranthus hybridus HOM05D005218 ORTHO05D006657 2.0e-173 612.8 434 70.0
MELO3C025278.2 Cucumis melo HOM05D005218 ORTHO05D006657 1.7e-172 609.8 434 69.1
Nn5g26729 Nelumbo nucifera HOM05D005218 ORTHO05D006657 1.7e-172 609.8 434 68.9
CARHR212360 Cardamine hirsuta HOM05D005218 ORTHO05D006657 8.3e-172 607.4 432 69.9
AL6G10010 Arabidopsis lyrata HOM05D005218 ORTHO05D006657 1.1e-171 607.1 432 69.7
CsaV3_4G013540 Cucumis sativus L. HOM05D005218 ORTHO05D006657 3.1e-171 605.5 434 68.7
FAN02G3856 Fragaria x ananassa HOM05D005218 ORTHO05D006657 9.1e-171 604.0 431 69.8
Sed0017962 Sechium edule HOM05D005218 ORTHO05D006657 9.1e-171 604.0 434 69.4
Hund19374 Selenicereus undatus HOM05D005218 ORTHO05D006657 1.2e-170 603.6 432 67.6
ECA248G3767 Erigeron canadensis HOM05D005218 ORTHO05D006657 1.6e-170 603.2 431 68.2
Lj2A53G27 Lonicera japonica HOM05D005218 ORTHO05D006657 2.0e-170 602.8 461 67.0
Migut.J00001 Erythranthe guttata HOM05D005218 ORTHO05D006657 1.0e-169 600.5 438 67.6
Thhalv10013603m.g Eutrema salsugineum HOM05D005218 ORTHO05D006657 1.3e-169 600.1 432 69.2
Sabra04G0159600 Salix brachista HOM05D005218 ORTHO05D006657 1.7e-169 599.7 434 69.1
AT5G01010 Arabidopsis thaliana HOM05D005218 ORTHO05D006657 2.9e-169 599.0 432 68.8
Sabra06G0088900 Salix brachista HOM05D005218 ORTHO05D006657 2.5e-168 595.9 429 68.3
Sp6g41230 Schrenkiella parvula HOM05D005218 ORTHO05D006657 2.5e-168 595.9 432 69.0
Carub.0024s0001 Capsella rubella HOM05D005218 ORTHO05D006657 4.2e-168 595.1 437 67.7
BcaC03g13099 Brassica carinata HOM05D005218 ORTHO05D006657 7.2e-168 594.3 431 69.1
ECA236G4239 Erigeron canadensis HOM05D005218 ORTHO05D006657 1.6e-167 593.2 434 66.8
MBI15_g33472_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 4.7e-167 591.7 434 68.0
BcaB01g06261 Brassica carinata HOM05D005218 ORTHO05D006657 1.4e-166 590.1 432 68.8
Rhsim04G0119400 Rhododendron simsii HOM05D005218 ORTHO05D006657 1.4e-166 590.1 473 63.8
MSTRG.5474 Avicennia marina HOM05D005218 ORTHO05D006657 6.8e-166 587.8 436 66.3
HanXRQChr14g0445831 Helianthus annuus HOM05D005218 ORTHO05D006657 4.4e-165 585.1 434 67.5
Aa31LG5G11280 Aethionema arabicum HOM05D005218 ORTHO05D006657 7.5e-165 584.3 418 69.6
HanXRQChr11g0329321 Helianthus annuus HOM05D005218 ORTHO05D006657 1.3e-164 583.6 427 66.3
THA.LOC104816146 Tarenaya hassleriana HOM05D005218 ORTHO05D006657 1.3e-164 583.6 442 68.1
TPR.G30733 Trifolium pratense HOM05D005218 ORTHO05D006657 9.2e-163 577.4 729 48.0
CDE06G0216 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 5.9e-162 574.7 431 67.7
BolC2t05996H Brassica oleracea HOM05D005218 ORTHO05D006657 1.7e-161 573.2 475 62.7
DCAR_023955 Daucus carota HOM05D005218 ORTHO05D006657 1.7e-161 573.2 515 58.3
BraA02t04669Z Brassica rapa HOM05D005218 ORTHO05D006657 5.0e-161 571.6 481 62.0
BNapus_Darmor_BZH_scaffold_209p00020 Brassica napus HOM05D005218 ORTHO05D006657 2.5e-160 569.3 418 68.7
BraA03t09386Z Brassica rapa HOM05D005218 ORTHO05D006657 5.6e-160 568.2 474 62.4
unitig_699.g19018 Utricularia gibba HOM05D005218 ORTHO05D006657 4.7e-159 565.1 431 65.2
Lj3g0026233 Lotus japonicus HOM05D005218 ORTHO05D006657 1.0e-158 563.9 378 77.8
PSO384G1586 Papaver somniferum HOM05D005218 ORTHO05D006657 3.1e-158 562.4 436 64.4
Nitab4.5_0003037g0020 Nicotiana tabacum HOM05D005218 ORTHO05D006657 1.7e-156 556.6 437 66.4
Psat2g191240 Pisum sativum HOM05D005218 ORTHO05D006657 1.7e-156 556.6 360 79.7
Nitab4.5_0002139g0070 Nicotiana tabacum HOM05D005218 ORTHO05D006657 2.2e-156 556.2 437 65.9
SGA_v2.0_scaffold85G26585 Striga asiatica HOM05D005218 ORTHO05D006657 3.7e-156 555.4 526 56.1
Zm00001eb284640 Zea mays HOM05D005218 ORTHO05D006657 9.2e-155 550.8 435 63.9
Actinidia20812 Actinidia chinensis HOM05D005218 ORTHO05D006657 5.0e-153 545.0 365 73.7
PSO339G0748 Papaver somniferum HOM05D005218 ORTHO05D006657 8.6e-153 544.3 450 61.6
ClCG04G005100 Citrullus lanatus HOM05D005218 ORTHO05D006657 1.9e-152 543.1 434 63.4
Os05g0306000 Oryza sativa ssp. japonica HOM05D005218 ORTHO05D006657 1.2e-151 540.4 435 63.4
Sabra04G0159700 Salix brachista HOM05D005218 ORTHO05D006657 2.8e-151 539.3 419 65.9
EL10Ac4g10395 Beta vulgaris HOM05D005218 ORTHO05D006657 1.3e-148 530.4 423 64.5
FAN05G1148 Fragaria x ananassa HOM05D005218 ORTHO05D006657 2.3e-145 519.6 433 62.6
Hma1.2p1_1020F.1_g248520 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 6.2e-143 511.5 364 71.7
FvH4_6g09090 Fragaria vesca HOM05D005218 ORTHO05D006657 1.1e-142 510.8 381 68.0
FAN14G0475 Fragaria x ananassa HOM05D005218 ORTHO05D006657 4.0e-142 508.8 381 67.7
Sc02g0000100 Simmondsia chinensis HOM05D005218 ORTHO05D006657 3.7e-140 502.3 381 66.9
Haze_21230 Corylus avellana HOM05D005218 ORTHO05D006657 7.1e-139 498.0 452 60.2
Lsat_1_v5_gn_5_153501 Lactuca sativa HOM05D005218 ORTHO05D006657 6.4e-132 474.9 427 58.5
AagrBONN_evm.TU.Sc2ySwM_228.4747 Anthoceros agrestis HOM05D005218 ORTHO05D006657 1.0e-129 467.6 440 54.8
vmacro08964 Vaccinium macrocarpon HOM05D005218 ORTHO05D006657 5.8e-125 451.8 698 41.3
SMO198G0089 Selaginella moellendorffii HOM05D005218 ORTHO05D006657 3.0e-121 439.5 429 51.5
QL07p030634 Quercus lobata HOM05D005218 ORTHO05D006657 2.1e-119 433.3 302 71.9
FAN09G2324 Fragaria x ananassa HOM05D005218 ORTHO05D006657 2.0e-117 426.8 320 68.4
BcaB01g06128 Brassica carinata HOM05D005218 ORTHO05D006657 1.7e-116 423.7 337 63.5
BolC3t12584H Brassica oleracea HOM05D005218 ORTHO05D006657 1.7e-116 423.7 336 65.2
Mapoly0045s0012 Marchantia polymorpha HOM05D005218 ORTHO05D006657 2.9e-116 422.9 431 50.1
Oeu027654.1 Olea europaea HOM05D005218 ORTHO05D006657 4.9e-108 395.6 297 68.7
CBR_g279 Chara braunii HOM05D005218 ORTHO05D006657 1.3e-105 387.5 440 48.9
Pp3c6_1360 Physcomitrium patens HOM05D005218 ORTHO05D006657 1.6e-95 354.0 350 52.6
Cpa.g.sc1919.1 Carica papaya HOM05D005218 ORTHO05D006657 1.5e-88 330.9 215 77.2
MBI03_g45858_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 2.9e-84 316.6 246 67.1
AUR62006464 Chenopodium quinoa HOM05D005218 ORTHO05D006657 4.5e-77 292.7 221 68.3
RcHm_v2.0_Chr4g0423451 Rosa chinensis HOM05D005218 ORTHO05D006657 1.1e-72 278.1 237 65.4
CiPaw.09G224300 Carya illinoinensis HOM05D005218 ORTHO05D006657 6.5e-68 262.3 161 78.9
RcHm_v2.0_Chr3g0481991 Rosa chinensis HOM05D005218 ORTHO05D006657 5.5e-67 259.2 215 66.5
RcHm_v2.0_Chr2g0142661 Rosa chinensis HOM05D005218 ORTHO05D006657 1.4e-65 254.6 283 53.0
PRCOL_00004779 Prasinoderma coloniale HOM05D005218 ORTHO05D006657 1.5e-59 234.6 434 34.3
SEGI_33787 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 3.4e-56 223.4 159 67.9
Actinidia35793 Actinidia chinensis HOM05D005218 ORTHO05D006657 1.7e-55 221.1 131 77.9
CDE07G0921 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 4.5e-53 213.0 135 76.3
Actinidia32581 Actinidia chinensis HOM05D005218 ORTHO05D006657 6.1e-50 202.6 434 35.0
AUR62029820 Chenopodium quinoa HOM05D005218 ORTHO05D006657 4.6e-45 186.4 144 65.3
CiPaw.09G224400 Carya illinoinensis HOM05D005218 ORTHO05D006657 6.4e-39 166.0 142 63.4
Cre02.g117950 Chlamydomonas reinhardtii HOM05D005218 ORTHO05D006657 3.0e-36 157.1 318 33.0
A07p02820 Brassica napus HOM05D005218 ORTHO05D006657 1.4e-33 148.3 197 45.7
BraA07t28080Z Brassica rapa HOM05D005218 ORTHO05D006657 4.0e-33 146.7 190 46.3
CDE07G0273 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 7.5e-32 142.5 151 50.3
CDE07G0892 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 5.4e-30 136.3 120 59.2
Sabra12G0043200 Salix brachista HOM05D005218 ORTHO05D006657 1.4e-22 111.7 141 45.4
RcHm_v2.0_Chr3g0494831 Rosa chinensis HOM05D005218 ORTHO05D006657 1.6e-21 108.2 104 50.0
Carub.0005s0002 Capsella rubella HOM05D005218 ORTHO05D006657 1.1e-19 102.1 57 77.2
Lsat_1_v5_gn_2_39840 Lactuca sativa HOM05D000613 ORTHO05D000446 1.5e-16 91.7 71 59.2
Lsat_1_v5_gn_8_9201 Lactuca sativa HOM05D005218 ORTHO05D000446 7.6e-16 89.4 71 59.2
Lsat_1_v5_gn_4_157281 Lactuca sativa HOM05D005218 ORTHO05D000446 1.4e-14 85.1 71 56.3
Lsat_1_v5_gn_8_105921 Lactuca sativa HOM05D005218 ORTHO05D002018 2.5e-11 74.3 77 50.6
SEGI_25208 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 7.3e-11 72.8 81 44.4
Duzib151G1109 Durio zibethinus HOM05D005218 ORTHO05D000596 2.8e-10 70.9 43 74.4
BcaB01g06129 Brassica carinata HOM05D005218 ORTHO05D006657 3.4e-08 63.9 52 61.5
Lsat_1_v5_gn_5_172481 Lactuca sativa HOM05D001702 ORTHO05D001791 1.1e-06 58.9 41 65.9
MBI07_g27400_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 1.4e-06 58.5 47 61.7
RcHm_v2.0_Chr2g0163341 Rosa chinensis HOM05D005218 ORTHO05D006657 7.1e-06 56.2 39 69.2


User provided reference genes

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