Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr12g0208781 Lupinus albus HOM05D004561 ORTHO05D005315 4.8e-151 537.7 259 100.0
Lj4g0004659 Lotus japonicus HOM05D004561 ORTHO05D005315 2.9e-124 448.7 259 81.9
Glyma.08G081300 Glycine max HOM05D004561 ORTHO05D005315 8.0e-122 440.7 261 82.4
Psat1g047920 Pisum sativum HOM05D004561 ORTHO05D005315 4.4e-120 434.9 259 79.9
Medtr4g094538 Medicago truncatula HOM05D004561 ORTHO05D005315 2.2e-119 432.6 259 78.8
TPR.G30372 Trifolium pratense HOM05D004561 ORTHO05D005315 2.2e-119 432.6 259 79.9
Glyma.05G126500 Glycine max HOM05D004561 ORTHO05D005315 3.5e-117 425.2 279 74.2
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 3.6e-106 388.7 221 81.4
CiPaw.15G149700 Carya illinoinensis HOM05D004561 ORTHO05D005315 2.9e-103 379.0 258 68.2
Sabra12G0028700 Salix brachista HOM05D004561 ORTHO05D005315 6.0e-101 371.3 260 66.5
QL09p040874 Quercus lobata HOM05D004561 ORTHO05D005315 1.0e-100 370.5 258 66.7
Lj6g0005186 Lotus japonicus HOM05D004561 ORTHO05D005315 3.9e-100 368.6 219 79.0
Potri.012G041700 Populus trichocarpa HOM05D004561 ORTHO05D005315 2.5e-99 365.9 260 64.6
Prupe.5G069900 Prunus persica HOM05D004561 ORTHO05D005315 4.3e-99 365.2 262 66.8
CSS0045511 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 9.5e-99 364.0 259 65.3
GSVIVG01028605001 Vitis vinifera HOM05D004561 ORTHO05D005315 2.4e-97 359.4 260 66.9
Hma1.2p1_0018F.1_g012650 Hydrangea macrophylla HOM05D004561 ORTHO05D005315 9.9e-96 354.0 258 64.7
COL.COLO4_13996 Corchorus olitorius HOM05D004561 ORTHO05D005315 1.3e-95 353.6 259 65.3
Phvul.002G198500 Phaseolus vulgaris HOM05D004561 ORTHO05D005315 2.9e-95 352.4 200 82.0
Thecc.01G124300 Theobroma cacao HOM05D004561 ORTHO05D005315 3.8e-95 352.1 259 65.6
Dinv14864 Davidia involucrata HOM05D004561 ORTHO05D005315 1.1e-94 350.5 258 64.7
Eucgr.B03172 Eucalyptus grandis HOM05D004561 ORTHO05D005315 1.4e-94 350.1 255 64.7
MD16G1270300 Malus domestica HOM05D004561 ORTHO05D005315 9.2e-94 347.4 219 73.1
HanXRQChr15g0480201 Helianthus annuus HOM05D004561 ORTHO05D005315 2.1e-93 346.3 259 63.3
TWI15G0666 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 2.7e-93 345.9 258 64.3
Atru.chr13.142 Acer truncatum HOM05D004561 ORTHO05D005315 6.0e-93 344.7 257 62.6
RcHm_v2.0_Chr7g0203331 Rosa chinensis HOM05D004561 ORTHO05D005315 3.0e-92 342.4 263 64.3
TAR628G1415 Trochodendron aralioides HOM05D004561 ORTHO05D005315 5.1e-92 341.7 260 62.3
FAN08G3218 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.5e-91 340.1 263 63.1
Sed0015683 Sechium edule HOM05D004561 ORTHO05D005315 1.9e-91 339.7 258 61.6
TWI81G0190 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 1.9e-91 339.7 257 63.0
PGSC0003DMG400009224 Solanum tuberosum HOM05D004561 ORTHO05D005315 2.5e-91 339.3 259 62.2
Sc18g0002470 Simmondsia chinensis HOM05D004561 ORTHO05D005315 5.6e-91 338.2 257 61.5
MSTRG.22847 Avicennia marina HOM05D004561 ORTHO05D005315 1.6e-90 336.7 260 63.1
Lsat_1_v5_gn_7_30581 Lactuca sativa HOM05D004561 ORTHO05D005315 1.6e-90 336.7 261 62.5
FvH4_7g18930 Fragaria vesca HOM05D004561 ORTHO05D005315 2.1e-90 336.3 263 62.4
FAN06G3856 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.1e-90 336.3 263 62.4
CsaV3_1G002780 Cucumis sativus L. HOM05D004561 ORTHO05D005315 2.8e-90 335.9 259 61.4
FAN18G3337 Fragaria x ananassa HOM05D004561 ORTHO05D005315 3.6e-90 335.5 209 72.2
FAN13G2292 Fragaria x ananassa HOM05D004561 ORTHO05D005315 4.7e-90 335.1 208 72.1
MELO3C017214.2 Cucumis melo HOM05D004561 ORTHO05D005315 8.1e-90 334.3 259 62.2
Solyc11g017400.2 Solanum lycopersicum HOM05D004561 ORTHO05D005315 2.4e-89 332.8 259 62.2
CAN.G370.25 Capsicum annuum HOM05D004561 ORTHO05D005315 3.1e-89 332.4 257 61.9
FvH4_5g18940 Fragaria vesca HOM05D004561 ORTHO05D005315 5.3e-89 331.6 263 62.0
Gorai.012G033300 Gossypium raimondii HOM05D004561 ORTHO05D005315 1.2e-88 330.5 260 61.5
Solyc08g074360.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 1.2e-88 330.5 259 59.5
arahy.Tifrunner.gnm1.ann1.AX2CN5 Arachis hypogaea HOM05D004561 ORTHO05D005315 1.5e-88 330.1 265 66.4
Gohir.A05G386400 Gossypium hirsutum HOM05D004561 ORTHO05D005315 1.5e-88 330.1 260 61.5
Ciclev10002226m.g Citrus clementina HOM05D004561 ORTHO05D005315 3.4e-88 328.9 257 59.5
Gohir.D04G023500 Gossypium hirsutum HOM05D004561 ORTHO05D005315 5.8e-88 328.2 260 61.2
Lj1A1185G61 Lonicera japonica HOM05D004561 ORTHO05D005315 5.8e-88 328.2 296 55.7
Sopen08g023020 Solanum pennellii HOM05D004561 ORTHO05D005315 1.7e-87 326.6 259 60.2
Manes.08G062966 Manihot esculenta HOM05D004561 ORTHO05D005315 2.2e-87 326.2 257 59.5
FAN06G2746 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.9e-87 325.9 255 62.0
FAN04G2378 Fragaria x ananassa HOM05D004561 ORTHO05D005315 3.8e-87 325.5 252 62.3
Nn5g27375 Nelumbo nucifera HOM05D004561 ORTHO05D005315 3.8e-87 325.5 258 59.3
Peaxi162Scf00152g00158 Petunia axillaris HOM05D004561 ORTHO05D005315 6.4e-87 324.7 262 63.0
MSTRG.11225 Avicennia marina HOM05D004561 ORTHO05D005315 1.9e-86 323.2 258 57.8
Hund26218 Selenicereus undatus HOM05D004561 ORTHO05D005315 1.9e-86 323.2 223 65.0
Sp5g04590 Schrenkiella parvula HOM05D004561 ORTHO05D005315 2.1e-85 319.7 259 60.2
PSO210G6857 Papaver somniferum HOM05D004561 ORTHO05D005315 3.5e-85 318.9 257 59.1
THA.LOC104822320 Tarenaya hassleriana HOM05D004561 ORTHO05D005315 4.6e-85 318.5 259 59.8
Migut.I00621 Erythranthe guttata HOM05D004561 ORTHO05D005315 6.0e-85 318.2 259 57.1
ECA233G0879 Erigeron canadensis HOM05D004561 ORTHO05D005315 7.8e-85 317.8 257 59.1
SalBow3G1851 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.3e-84 317.0 271 57.9
BcaB02g07548 Brassica carinata HOM05D004561 ORTHO05D005315 2.5e-83 312.8 280 55.7
BraA07t30043Z Brassica rapa HOM05D004561 ORTHO05D005315 3.3e-83 312.4 262 58.0
CARHR168490 Cardamine hirsuta HOM05D004561 ORTHO05D005315 4.3e-83 312.0 259 59.1
A07p23920 Brassica napus HOM05D004561 ORTHO05D005315 9.6e-83 310.8 257 58.0
AT3G58130 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 1.6e-82 310.1 257 57.6
Aqoxy6G01699 Aquilegia oxysepala HOM05D004561 ORTHO05D005315 2.8e-82 309.3 257 55.6
Cc03_g07430 Coffea canephora HOM05D004561 ORTHO05D005315 3.6e-82 308.9 260 60.8
PGSC0003DMG403029595 Solanum tuberosum HOM05D004561 ORTHO05D005315 4.8e-82 308.5 238 60.5
Thhalv10002077m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 6.2e-82 308.1 260 57.7
BolC6t37673H Brassica oleracea HOM05D004561 ORTHO05D005315 8.1e-82 307.8 257 57.6
Nitab4.5_0000422g0080 Nicotiana tabacum HOM05D004561 ORTHO05D005315 8.1e-82 307.8 241 61.8
Carub.0005s2498 Capsella rubella HOM05D004561 ORTHO05D005315 1.1e-81 307.4 259 56.8
Oeu031248.3 Olea europaea HOM05D004561 ORTHO05D005315 2.4e-81 306.2 289 54.3
AL5G39820 Arabidopsis lyrata HOM05D004561 ORTHO05D005315 3.1e-81 305.8 259 57.5
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 2.0e-80 303.1 238 59.7
Rhsim06G0237000 Rhododendron simsii HOM05D004561 ORTHO05D005315 4.9e-79 298.5 278 53.2
CDE04G2633 Ceratophyllum demersum HOM05D004561 ORTHO05D005315 8.4e-79 297.7 217 58.1
vmacro18667 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 1.4e-78 297.0 326 48.8
AT2G27340 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 9.3e-78 294.3 254 56.7
BcaC08g44900 Brassica carinata HOM05D004561 ORTHO05D005315 9.3e-78 294.3 257 54.9
AUR62010959 Chenopodium quinoa HOM05D004561 ORTHO05D005315 9.3e-78 294.3 237 58.6
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 1.6e-77 293.5 258 56.6
Peaxi162Scf00310g00711 Petunia axillaris HOM05D004561 ORTHO05D005315 2.7e-77 292.7 233 61.4
AUR62007426 Chenopodium quinoa HOM05D004561 ORTHO05D005315 7.9e-77 291.2 237 57.8
C06p25150 Brassica napus HOM05D004561 ORTHO05D005315 3.9e-76 288.9 299 50.2
ATR0661G441 Amborella trichopoda HOM05D004561 ORTHO05D005315 6.7e-76 288.1 260 55.8
unitig_744.g24647 Utricularia gibba HOM05D004561 ORTHO05D005315 4.3e-75 285.4 274 54.4
SGA_v2.0_scaffold37G14646 Striga asiatica HOM05D004561 ORTHO05D005315 5.6e-75 285.0 237 57.8
Zm00001eb433850 Zea mays HOM05D004561 ORTHO05D005315 7.4e-75 284.6 259 51.7
C08p33660 Brassica napus HOM05D004561 ORTHO05D005315 3.7e-74 282.3 257 53.7
AUR62021469 Chenopodium quinoa HOM05D004561 ORTHO05D005315 6.2e-74 281.6 212 61.8
arahy.Tifrunner.gnm1.ann1.3X42ZC Arachis hypogaea HOM05D004561 ORTHO05D005315 3.4e-72 275.8 171 79.5
EL10Ac8g18446 Beta vulgaris HOM05D004561 ORTHO05D005315 2.9e-71 272.7 254 53.1
SalBow1G5912 Salvia bowleyana HOM05D004561 ORTHO05D005315 4.9e-71 271.9 246 57.3
Os04g0678800 Oryza sativa ssp. japonica HOM05D004561 ORTHO05D005315 4.2e-70 268.9 259 52.1
BcaC07g40276 Brassica carinata HOM05D004561 ORTHO05D005315 3.0e-68 262.7 221 57.0
Sopen11g009350 Solanum pennellii HOM05D004561 ORTHO05D005315 3.0e-68 262.7 182 66.5
SHI05351 Sapria himalayana HOM05D004561 ORTHO05D005315 5.6e-67 258.5 222 56.8
Aa31LG10G12840 Aethionema arabicum HOM05D004561 ORTHO05D005315 1.3e-66 257.3 303 47.5
RcHm_v2.0_Chr7g0203411 Rosa chinensis HOM05D004561 ORTHO05D005315 1.2e-64 250.8 226 56.2
DCAR_002722 Daucus carota HOM05D004561 ORTHO05D005315 4.5e-64 248.8 197 57.9
FAN18G2677 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.2e-61 240.7 187 61.5
A09p50910 Brassica napus HOM05D004561 ORTHO05D005315 3.4e-56 222.6 218 51.8
CAN.G1530.1 Capsicum annuum HOM05D004561 ORTHO05D005315 1.3e-55 220.7 185 57.3
AagrBONN_evm.TU.Sc2ySwM_368.3407 Anthoceros agrestis HOM05D004561 ORTHO05D005315 1.4e-54 217.2 226 46.5
HPP92_027560 Vanilla planifolia HOM05D004561 ORTHO05D005315 3.9e-52 209.1 191 50.8
ECA236G3170 Erigeron canadensis HOM05D004561 ORTHO05D005315 5.7e-51 205.3 142 65.5
vmacro21453 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 2.2e-50 203.4 195 52.3
BcaC07g40185 Brassica carinata HOM05D004561 ORTHO05D005315 1.1e-49 201.1 216 49.5
BolC8t50963H Brassica oleracea HOM05D004561 ORTHO05D005315 1.1e-49 201.1 180 52.8
Pp3c13_19470 Physcomitrium patens HOM05D004561 ORTHO05D005315 5.3e-49 198.7 212 43.9
Zm00001eb066050 Zea mays HOM05D004561 ORTHO05D005315 1.2e-48 197.6 185 49.7
PSO761G0502 Papaver somniferum HOM05D004561 ORTHO05D005315 2.6e-48 196.4 176 55.1
AUR62002652 Chenopodium quinoa HOM05D004561 ORTHO05D005315 7.7e-48 194.9 222 46.4
Carub.0339s0001 Capsella rubella HOM05D004561 ORTHO05D005315 5.0e-47 192.2 141 63.8
CiPaw.16G098200 Carya illinoinensis HOM05D004561 ORTHO05D005315 7.2e-46 188.3 149 61.1
Haze_18936 Corylus avellana HOM05D004561 ORTHO05D005315 7.9e-45 184.9 170 54.1
Cpa.g.sc437.1 Carica papaya HOM05D004561 ORTHO05D005315 5.7e-43 178.7 145 58.6
Mapoly0029s0047 Marchantia polymorpha HOM05D004561 ORTHO05D005315 1.3e-42 177.6 252 41.3
Nitab4.5_0000560g0110 Nicotiana tabacum HOM05D004561 ORTHO05D005315 1.2e-40 171.0 151 57.6
MD06G1059000 Malus domestica HOM05D004561 ORTHO05D005315 3.8e-39 166.0 115 64.3
arahy.Tifrunner.gnm1.ann1.Y05SLV Arachis hypogaea HOM05D004561 ORTHO05D005315 4.7e-37 159.1 97 76.3
Hund02231 Selenicereus undatus HOM05D004561 ORTHO05D005315 3.0e-36 156.4 196 42.9
Sopen08g022960 Solanum pennellii HOM05D004561 ORTHO05D005315 2.8e-34 149.8 130 54.6
Hund26251 Selenicereus undatus HOM05D004561 ORTHO05D005315 1.1e-33 147.9 113 60.2
Carub.0008s0419 Capsella rubella HOM05D004561 ORTHO05D005315 4.1e-33 146.0 127 55.1
MCO09G807 Micromonas commoda HOM05D004561 ORTHO05D005315 2.2e-31 140.2 217 38.7
CSS0036958 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.1e-30 137.9 85 71.8
CSS0005948 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 7.2e-30 135.2 85 70.6
CSS0005045 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 9.4e-30 134.8 85 70.6
CSS0006634 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 2.1e-29 133.7 85 69.4
Sopen05g006540 Solanum pennellii HOM05D004561 ORTHO05D005315 1.0e-28 131.3 150 48.7
PRCOL_00001899 Prasinoderma coloniale HOM05D004561 ORTHO05D005315 2.2e-26 123.6 231 33.3
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 2.8e-26 123.2 354 26.8
SalBow1G4548 Salvia bowleyana HOM05D004561 ORTHO05D005315 4.8e-26 122.5 114 50.0
Cre06.g300100 Chlamydomonas reinhardtii HOM05D004561 ORTHO05D005315 1.8e-25 120.6 295 29.2
SalBow1G7315 Salvia bowleyana HOM05D004561 ORTHO05D005315 5.3e-25 119.0 239 36.0
SalBow1G4039 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.1e-21 107.1 66 65.2
SalBow1G5331 Salvia bowleyana HOM05D004561 ORTHO05D005315 4.7e-21 105.9 66 66.7
MBI08_g32523_MAGBIO Magnolia biondii HOM05D004561 ORTHO05D005315 8.0e-21 105.1 75 58.7
SalBow1G2796 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.4e-20 104.4 66 65.2
Solyc05g010730.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 3.0e-20 103.2 68 67.6
Nitab4.5_0013603g0010 Nicotiana tabacum HOM05D004561 ORTHO05D005315 5.2e-20 102.4 71 63.4
SEGI_12631 Sequoiadendron giganteum HOM05D004561 ORTHO05D005315 1.2e-19 101.3 75 57.3
Cpa.g.c32558.1 Carica papaya HOM05D004561 ORTHO05D005315 5.7e-19 99.0 73 60.3
RcHm_v2.0_Chr7g0204241 Rosa chinensis HOM05D004561 ORTHO05D005315 1.7e-15 87.4 91 53.8
SalBow1G6765 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.6e-13 80.9 81 51.9
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 3.6e-13 79.7 59 59.3
SHI05852 Sapria himalayana HOM05D000002 ORTHO05D000001 8.0e-13 78.6 82 53.7
Ca_17309_v3 Cicer arietinum L. HOM05D002967 ORTHO05D003281 2.3e-12 77.0 61 60.7
RcHm_v2.0_Chr7g0204201 Rosa chinensis HOM05D004561 ORTHO05D005315 4.0e-12 76.3 84 51.2
SHI05337 Sapria himalayana HOM05D004561 ORTHO05D005315 2.8e-10 70.1 102 37.3
Cc05_g02560 Coffea canephora HOM05D004561 ORTHO05D005315 4.1e-09 66.2 75 48.0
SalBow1G4445 Salvia bowleyana HOM05D025598 ORTHO05D005315 4.1e-09 66.2 90 43.3
FvH4_5g18980 Fragaria vesca HOM05D004561 ORTHO05D005315 1.0e-07 61.6 64 46.9


User provided reference genes

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