Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr12g0205771 Lupinus albus HOM05D005839 ORTHO05D005686 1.8e-30 135.2 65 100.0
Ca_18007_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 2.9e-20 101.3 64 75.0
Phvul.003G048600 Phaseolus vulgaris HOM05D005839 ORTHO05D005686 4.9e-20 100.5 64 76.6
VMungo0251G1575 Vigna mungo HOM05D005839 ORTHO05D005686 4.9e-20 100.5 64 76.6
Lj4g0005413 Lotus japonicus HOM05D005839 ORTHO05D005686 8.4e-20 99.8 64 75.0
Glyma.05G150200 Glycine max HOM05D005839 ORTHO05D005686 1.1e-19 99.4 64 75.0
Glyma.08G107100 Glycine max HOM05D005839 ORTHO05D005686 3.2e-19 97.8 56 80.4
Lalb_Chr07g0186981 Lupinus albus HOM05D005839 ORTHO05D005686 4.2e-19 97.4 59 74.6
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 2.1e-18 95.1 64 75.0
arahy.Tifrunner.gnm1.ann1.3YD71H Arachis hypogaea HOM05D005839 ORTHO05D005686 4.6e-18 94.0 63 68.3
arahy.Tifrunner.gnm1.ann1.SAUI5N Arachis hypogaea HOM05D005839 ORTHO05D005686 4.6e-18 94.0 63 68.3
Medtr8g081010 Medicago truncatula HOM05D005839 ORTHO05D005686 1.8e-17 92.0 65 70.8
Psat7g076360 Pisum sativum HOM05D005839 ORTHO05D005686 3.0e-17 91.3 63 68.3
arahy.Tifrunner.gnm1.ann1.98ICAR Arachis hypogaea HOM05D000340 ORTHO05D000821 5.1e-17 90.5 59 69.5
arahy.Tifrunner.gnm1.ann1.SDG4EV Arachis hypogaea HOM05D005839 ORTHO05D005686 6.7e-17 90.1 63 65.1
QL06p027171 Quercus lobata HOM05D005839 ORTHO05D005686 4.3e-16 87.4 57 66.7
Prupe.1G170500 Prunus persica HOM05D005839 ORTHO05D005686 1.6e-15 85.5 56 69.6
Haze_11680 Corylus avellana HOM05D005839 ORTHO05D005686 4.8e-15 84.0 57 63.2
Ciclev10004236m.g Citrus clementina HOM05D005839 ORTHO05D005686 1.1e-14 82.8 58 65.5
FvH4_4g12870 Fragaria vesca HOM05D005839 ORTHO05D005686 1.4e-14 82.4 56 67.9
FAN12G3285 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.4e-14 82.4 56 67.9
Thecc.04G191800 Theobroma cacao HOM05D005839 ORTHO05D005686 1.8e-14 82.0 56 64.3
Duzib151G0277 Durio zibethinus HOM05D005839 ORTHO05D005686 6.9e-14 80.1 56 66.1
MD04G1021500 Malus domestica HOM05D005839 ORTHO05D005686 6.9e-14 80.1 60 56.7
RcHm_v2.0_Chr4g0412531 Rosa chinensis HOM05D005839 ORTHO05D005686 1.2e-13 79.3 57 66.7
Duzib268G0552 Durio zibethinus HOM05D005839 ORTHO05D005686 4.5e-13 77.4 56 60.7
Actinidia28516 Actinidia chinensis HOM05D005839 ORTHO05D005686 1.0e-12 76.3 57 57.9
CiPaw.01G113800 Carya illinoinensis HOM05D005839 ORTHO05D005686 1.7e-12 75.5 57 57.9
Gorai.005G128100 Gossypium raimondii HOM05D005839 ORTHO05D005686 2.9e-12 74.7 56 58.9
Gohir.D02G113200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 5.0e-12 73.9 56 57.1
Peaxi162Scf00286g00911 Petunia axillaris HOM05D005839 ORTHO05D005686 8.4e-12 73.2 59 61.0
PGR083G0592 Punica granatum HOM05D005839 ORTHO05D005686 1.4e-11 72.4 56 60.7
Potri.014G146200 Populus trichocarpa HOM05D005839 ORTHO05D005686 1.9e-11 72.0 57 59.6
Sabra14G0109900 Salix brachista HOM05D005839 ORTHO05D005686 2.5e-11 71.6 57 59.6
THA.LOC104808672 Tarenaya hassleriana HOM05D010750 ORTHO05D005686 2.5e-11 71.6 59 59.3
CANSAT78G1593 Cannabis sativa HOM05D005839 ORTHO05D005686 4.2e-11 70.9 59 62.7
Nitab4.5_0000037g0160 Nicotiana tabacum HOM05D005839 ORTHO05D005686 7.2e-11 70.1 60 61.7
Cpa.g.sc157.17 Carica papaya HOM05D005839 ORTHO05D005686 9.3e-11 69.7 54 59.3
Gohir.A10G130200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 9.3e-11 69.7 56 53.6
Eucgr.H02631 Eucalyptus grandis HOM05D005839 ORTHO05D005686 2.1e-10 68.6 58 60.3
FAN22G0032 Fragaria x ananassa HOM05D005839 ORTHO05D005686 2.1e-10 68.6 52 63.5
Gohir.D10G136100 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.1e-10 68.6 56 53.6
Actinidia35832 Actinidia chinensis HOM05D005839 ORTHO05D005686 2.7e-10 68.2 57 52.6
Gohir.A09G207800 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.7e-10 68.2 56 58.9
Aa31LG9G3190 Aethionema arabicum HOM05D010750 ORTHO05D005686 3.5e-10 67.8 58 58.6
CAN.G1684.4 Capsicum annuum HOM05D005839 ORTHO05D005686 3.5e-10 67.8 59 61.0
MELO3C006781.2 Cucumis melo HOM05D005839 ORTHO05D005686 3.5e-10 67.8 55 56.4
Thhalv10024466m.g Eutrema salsugineum HOM05D010750 ORTHO05D005686 3.5e-10 67.8 58 53.4
Manes.05G199100 Manihot esculenta HOM05D005839 ORTHO05D005686 3.5e-10 67.8 55 54.5
Solyc09g092550.4 Solanum lycopersicum HOM05D005839 ORTHO05D005686 4.6e-10 67.4 59 61.0
Sopen09g035450 Solanum pennellii HOM05D005839 ORTHO05D005686 4.6e-10 67.4 59 61.0
PGSC0003DMG401021870 Solanum tuberosum HOM05D005839 ORTHO05D005686 4.6e-10 67.4 59 61.0
CsaV3_3G015820 Cucumis sativus L. HOM05D005839 ORTHO05D005686 6.1e-10 67.0 55 56.4
Gorai.011G150900 Gossypium raimondii HOM05D005839 ORTHO05D005686 6.1e-10 67.0 55 52.7
PGSC0003DMG400021878 Solanum tuberosum HOM05D005839 ORTHO05D005686 6.1e-10 67.0 59 61.0
Atru.chr3.1775 Acer truncatum HOM05D005839 ORTHO05D005686 7.9e-10 66.6 56 60.7
Sc13g0000540 Simmondsia chinensis HOM05D005839 ORTHO05D005686 7.9e-10 66.6 52 53.8
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.0e-09 66.2 47 68.1
arahy.Tifrunner.gnm1.ann1.62570H Arachis hypogaea HOM05D005839 ORTHO05D005686 1.3e-09 65.9 57 61.4
AUR62018535 Chenopodium quinoa HOM05D005839 ORTHO05D005686 1.3e-09 65.9 57 52.6
AUR62020882 Chenopodium quinoa HOM05D005839 ORTHO05D005686 1.3e-09 65.9 57 52.6
Gorai.006G225000 Gossypium raimondii HOM05D005839 ORTHO05D005686 1.3e-09 65.9 56 57.1
ClCG05G007080 Citrullus lanatus HOM05D005839 ORTHO05D005686 2.3e-09 65.1 55 52.7
Gohir.D09G201300 Gossypium hirsutum HOM05D005839 ORTHO05D005686 3.0e-09 64.7 56 55.4
Potri.002G235900 Populus trichocarpa HOM05D005839 ORTHO05D005686 3.9e-09 64.3 57 54.4
Sed0009973 Sechium edule HOM05D005839 ORTHO05D005686 5.1e-09 63.9 55 52.7
AT4G14200 Arabidopsis thaliana HOM05D010750 ORTHO05D005686 8.7e-09 63.2 58 50.0
Carub.0007s2819 Capsella rubella HOM05D010750 ORTHO05D005686 8.7e-09 63.2 58 50.0
Hma1.2p1_0984F.1_g244280 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 8.7e-09 63.2 58 56.9
Sp7g12060 Schrenkiella parvula HOM05D010750 ORTHO05D005686 8.7e-09 63.2 58 50.0
Sed0018641 Sechium edule HOM05D005839 ORTHO05D005686 8.7e-09 63.2 55 50.9
Cc03_g09160 Coffea canephora HOM05D005839 ORTHO05D005686 1.1e-08 62.8 59 49.2
AL7G42170 Arabidopsis lyrata HOM05D010750 ORTHO05D005686 1.5e-08 62.4 58 50.0
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.5e-08 62.4 47 66.0
COL.COLO4_04260 Corchorus olitorius HOM05D005839 ORTHO05D005686 2.5e-08 61.6 48 60.4
Dinv32166 Davidia involucrata HOM05D005839 ORTHO05D005686 2.5e-08 61.6 57 50.9
Hma1.2p1_1457F.1_g284680 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 3.3e-08 61.2 57 47.4
Lj6g0025267 Lotus japonicus HOM05D005839 ORTHO05D005686 3.3e-08 61.2 55 52.7
CARHR220270 Cardamine hirsuta HOM05D010750 ORTHO05D005686 4.3e-08 60.8 58 48.3
arahy.Tifrunner.gnm1.ann1.H8QNW8 Arachis hypogaea HOM05D005839 ORTHO05D005686 5.7e-08 60.5 57 57.9
BcaC02g09348 Brassica carinata HOM05D010750 ORTHO05D005686 5.7e-08 60.5 60 48.3
C04p41620 Brassica napus HOM05D010750 ORTHO05D005686 5.7e-08 60.5 60 48.3
BolC4t25741H Brassica oleracea HOM05D010750 ORTHO05D005686 5.7e-08 60.5 60 48.3
A04p07940 Brassica napus HOM05D010750 ORTHO05D005686 9.7e-08 59.7 60 48.3
BraA04t16484Z Brassica rapa HOM05D010750 ORTHO05D005686 9.7e-08 59.7 60 48.3
TAR636G0994 Trochodendron aralioides HOM05D005839 ORTHO05D005686 1.6e-07 58.9 57 50.9
TAR636G1565 Trochodendron aralioides HOM05D005839 ORTHO05D005686 1.6e-07 58.9 57 50.9
arahy.Tifrunner.gnm1.ann1.BWA67Y Arachis hypogaea HOM05D001957 ORTHO05D005931 4.8e-07 57.4 41 61.0
MSTRG.4261 Avicennia marina HOM05D005839 ORTHO05D005686 6.3e-07 57.0 57 45.6
Hund24442 Selenicereus undatus HOM05D005839 ORTHO05D005686 6.3e-07 57.0 44 52.3
Ah.04g149590 Amaranthus hybridus HOM05D005839 ORTHO05D005686 8.2e-07 56.6 57 47.4
DCAR_005282 Daucus carota HOM05D005839 ORTHO05D005686 1.1e-06 56.2 58 44.8
Lj3A356G9 Lonicera japonica HOM05D005839 ORTHO05D005686 3.1e-06 54.7 52 51.9
Hund19024 Selenicereus undatus HOM05D005839 ORTHO05D005686 4.1e-06 54.3 46 52.2


User provided reference genes

Program Settings