Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr12g0201701 Lupinus albus HOM05D004430 ORTHO05D005088 0.0e+00 3023.0 1592 100.0
Lalb_Chr07g0182821 Lupinus albus HOM05D004430 ORTHO05D005088 0.0e+00 2288.8 1602 77.5
Lalb_Chr13g0297721 Lupinus albus HOM05D004430 ORTHO05D005088 0.0e+00 2187.1 1610 75.3
Glyma.17G087600 Glycine max HOM05D004430 ORTHO05D005088 0.0e+00 1985.3 1606 68.9
Lj4g0003819 Lotus japonicus HOM05D004430 ORTHO05D005088 0.0e+00 1936.0 1609 67.5
Glyma.05G039400 Glycine max HOM05D004430 ORTHO05D005088 0.0e+00 1908.6 1593 67.3
arahy.Tifrunner.gnm1.ann1.FBBL0Z Arachis hypogaea HOM05D004430 ORTHO05D005088 0.0e+00 1872.8 1612 65.4
VMungo1215G2998 Vigna mungo HOM05D004430 ORTHO05D005088 0.0e+00 1827.0 1651 63.3
Phvul.003G202300 Phaseolus vulgaris HOM05D004430 ORTHO05D005088 0.0e+00 1783.8 1649 62.2
Ca_16154_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 0.0e+00 1583.2 1609 59.5
TPR.G28716 Trifolium pratense HOM05D004430 ORTHO05D005088 0.0e+00 1552.3 1606 58.9
Medtr3g077440 Medicago truncatula HOM05D004430 ORTHO05D005088 0.0e+00 1421.0 1612 55.5
Ca_16155_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 0.0e+00 1409.4 1602 55.0
Medtr3g077450 Medicago truncatula HOM05D004430 ORTHO05D005088 0.0e+00 1280.8 1622 51.9
TPR.G28721 Trifolium pratense HOM05D004430 ORTHO05D005088 0.0e+00 1252.3 1593 50.9
Dinv20629 Davidia involucrata HOM05D004430 ORTHO05D005088 0.0e+00 1213.7 1625 49.2
Atru.chr9.2519 Acer truncatum HOM05D004430 ORTHO05D005088 0.0e+00 1204.5 1674 47.4
Psat5g115080 Pisum sativum HOM05D004430 ORTHO05D005088 0.0e+00 1202.2 1603 49.5
QL10p008934 Quercus lobata HOM05D004430 ORTHO05D005088 0.0e+00 1197.6 1640 49.1
Thecc.03G018800 Theobroma cacao HOM05D004430 ORTHO05D005088 0.0e+00 1175.2 1605 48.9
Psat5g115040 Pisum sativum HOM05D004430 ORTHO05D005088 0.0e+00 1172.9 1594 48.9
Prupe.5G170400 Prunus persica HOM05D004430 ORTHO05D005088 0.0e+00 1162.9 1713 46.1
MD06G1170800 Malus domestica HOM05D004430 ORTHO05D005088 0.0e+00 1146.7 1638 47.2
COL.COLO4_30100 Corchorus olitorius HOM05D004430 ORTHO05D005088 0.0e+00 1132.5 1634 47.5
Dinv38562 Davidia involucrata HOM05D004430 ORTHO05D005088 0.0e+00 1109.7 1707 44.8
Gohir.A03G089900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 0.0e+00 1093.6 1628 47.2
CSS0010843 Camellia sinensis var. sinensis HOM05D004430 ORTHO05D005088 0.0e+00 1091.3 1633 46.5
MD14G1176500 Malus domestica HOM05D004430 ORTHO05D005088 0.0e+00 1089.7 1638 45.7
Gohir.D02G117900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 0.0e+00 1087.8 1631 46.7
Gorai.005G135600 Gossypium raimondii HOM05D004430 ORTHO05D005088 0.0e+00 1087.0 1631 46.7
Duzib084G1065 Durio zibethinus HOM05D004430 ORTHO05D005088 1.1e-311 1073.9 1635 46.2
Potri.015G079800 Populus trichocarpa HOM05D004430 ORTHO05D005088 4.0e-304 1048.9 1626 45.1
Duzib205G1695 Durio zibethinus HOM05D004430 ORTHO05D005088 4.4e-303 1045.4 1634 46.3
Duzib068G0887 Durio zibethinus HOM05D004430 ORTHO05D005088 3.7e-302 1042.3 1623 45.8
RcHm_v2.0_Chr7g0193171 Rosa chinensis HOM05D004430 ORTHO05D005088 1.8e-301 1040.0 1635 45.3
GSVIVG01007703001 Vitis vinifera HOM05D004430 ORTHO05D005088 2.4e-301 1039.6 1606 44.8
FAN13G0016 Fragaria x ananassa HOM05D004430 ORTHO05D005088 8.3e-294 1014.6 1635 45.1
TWI39G0976 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 2.3e-291 1006.5 1634 43.8
FvH4_5g05640 Fragaria vesca HOM05D004430 ORTHO05D005088 1.1e-290 1004.2 1636 44.7
Potri.012G088500 Populus trichocarpa HOM05D004430 ORTHO05D005088 1.2e-289 1000.7 1622 43.8
Manes.06G107200 Manihot esculenta HOM05D004430 ORTHO05D005088 8.3e-286 988.0 1667 42.3
TWI14G0761 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 7.8e-284 981.5 1631 43.3
FAN08G1542 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.4e-280 970.7 1640 44.0
Sabra15G0104100 Salix brachista HOM05D004430 ORTHO05D005088 1.8e-280 970.3 1620 43.1
CANSAT80G0620 Cannabis sativa HOM05D004430 ORTHO05D005088 6.8e-280 968.4 1640 44.3
FAN18G2048 Fragaria x ananassa HOM05D004430 ORTHO05D005088 7.0e-277 958.4 1628 43.6
Manes.06G107300 Manihot esculenta HOM05D004430 ORTHO05D005088 1.6e-273 947.2 1679 41.1
FAN04G2171 Fragaria x ananassa HOM05D004430 ORTHO05D005088 2.1e-273 946.8 1634 42.9
FAN18G1146 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.2e-271 941.0 1634 43.3
arahy.Tifrunner.gnm1.ann1.I95HTR Arachis hypogaea HOM05D004430 ORTHO05D005088 1.7e-270 937.2 769 65.3
Sabra12G0063700 Salix brachista HOM05D004430 ORTHO05D005088 7.8e-268 928.3 1671 41.3
TAR374G1038 Trochodendron aralioides HOM05D004430 ORTHO05D005088 2.1e-265 920.2 1660 42.4
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 4.6e-260 902.5 1605 42.5
ClCG06G017130 Citrullus lanatus HOM05D004430 ORTHO05D005088 1.2e-255 887.9 1622 41.5
CiPaw.11G023400 Carya illinoinensis HOM05D004430 ORTHO05D005088 7.6e-255 885.2 1543 41.5
Sed0016557 Sechium edule HOM05D004430 ORTHO05D005088 9.3e-253 878.2 1628 41.1
Ciclev10018497m.g Citrus clementina HOM05D004430 ORTHO05D005088 1.2e-252 877.9 1424 43.8
CsaV3_1G001360 Cucumis sativus L. HOM05D004430 ORTHO05D005088 6.0e-252 875.5 1623 40.8
vmacro19413 Vaccinium macrocarpon HOM05D004430 ORTHO05D005088 5.1e-251 872.5 1562 42.0
MELO3C026283.2 Cucumis melo HOM05D004430 ORTHO05D005088 3.3e-250 869.8 1624 41.2
Eucgr.B00248 Eucalyptus grandis HOM05D004430 ORTHO05D005088 1.6e-249 867.5 1620 41.0
AUR62028764 Chenopodium quinoa HOM05D004430 ORTHO05D005088 3.1e-248 863.2 1634 40.5
Sed0007760 Sechium edule HOM05D004430 ORTHO05D005088 4.8e-241 839.3 1608 41.2
AUR62008183 Chenopodium quinoa HOM05D004430 ORTHO05D005088 6.2e-233 812.4 1614 39.8
Nitab4.5_0003229g0080 Nicotiana tabacum HOM05D004430 ORTHO05D005088 1.3e-230 804.7 1623 39.2
Oeu036008.4 Olea europaea HOM05D004430 ORTHO05D005088 1.7e-230 804.3 1609 39.8
Rhsim08G0174600 Rhododendron simsii HOM05D004430 ORTHO05D005088 1.7e-230 804.3 1621 39.7
Solyc03g112660.3 Solanum lycopersicum HOM05D004430 ORTHO05D005088 6.0e-228 795.8 1641 39.4
THA.LOC104809247 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 9.6e-226 788.5 1605 38.7
Sopen03g031740 Solanum pennellii HOM05D004430 ORTHO05D005088 1.6e-225 787.7 1645 39.0
Nn3g16781 Nelumbo nucifera HOM05D004430 ORTHO05D005088 3.7e-225 786.6 1687 38.0
Peaxi162Scf00089g00174 Petunia axillaris HOM05D004430 ORTHO05D005088 3.8e-222 776.5 1634 37.9
CiPaw.12G028500 Carya illinoinensis HOM05D004430 ORTHO05D005088 5.0e-222 776.2 1407 41.4
Nitab4.5_0001207g0060 Nicotiana tabacum HOM05D004430 ORTHO05D005088 6.5e-222 775.8 1659 38.2
Oeu024704.1 Olea europaea HOM05D004430 ORTHO05D005088 1.6e-220 771.2 1676 38.0
PGR083G1025 Punica granatum HOM05D004430 ORTHO05D005088 1.0e-214 751.9 1636 38.8
Sc04g0001690 Simmondsia chinensis HOM05D004430 ORTHO05D005088 1.4e-213 748.0 1600 38.4
Migut.D01964 Erythranthe guttata HOM05D004430 ORTHO05D005088 1.5e-210 738.0 1657 38.8
Hund02762 Selenicereus undatus HOM05D004430 ORTHO05D005088 1.8e-208 731.1 1607 37.4
EL10Ac5g10708 Beta vulgaris HOM05D004430 ORTHO05D005088 7.4e-202 709.1 1626 37.3
Cc04_g12380 Coffea canephora HOM05D004430 ORTHO05D005088 3.7e-201 706.8 1301 39.5
THA.LOC104809778 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 4.1e-200 703.4 1633 37.0
SalBow6G6763 Salvia bowleyana HOM05D004430 ORTHO05D005088 2.0e-199 701.0 1652 37.4
SalBow6G6905 Salvia bowleyana HOM05D004430 ORTHO05D005088 4.5e-199 699.9 1653 37.5
MSTRG.4361 Avicennia marina HOM05D004430 ORTHO05D005088 1.1e-194 685.3 1657 36.9
CAN.G1166.22 Capsicum annuum HOM05D004430 ORTHO05D005088 4.8e-193 679.9 1633 36.3
MBI19_g24062_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 1.4e-192 678.3 1756 36.2
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 5.0e-190 669.8 1624 36.8
Sp7g22670 Schrenkiella parvula HOM05D004430 ORTHO05D005088 4.0e-179 633.6 1632 34.3
AT4G24680 Arabidopsis thaliana HOM05D004430 ORTHO05D005088 1.2e-178 632.1 1609 35.5
ECA232G4503 Erigeron canadensis HOM05D004430 ORTHO05D005088 1.7e-177 628.2 1638 36.3
Aqoxy3G01105 Aquilegia oxysepala HOM05D004430 ORTHO05D005088 2.8e-177 627.5 1663 34.4
Actinidia19338 Actinidia chinensis HOM05D004430 ORTHO05D005088 2.0e-175 621.3 1227 38.8
PSO478G3312 Papaver somniferum HOM05D004430 ORTHO05D005088 1.7e-169 601.7 1752 32.9
CARHR232060 Cardamine hirsuta HOM05D004430 ORTHO05D005088 3.7e-169 600.5 1619 34.1
PSO017G2086 Papaver somniferum HOM05D004430 ORTHO05D005088 6.4e-169 599.7 1738 33.4
Thhalv10024213m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 4.1e-168 597.0 1660 33.0
AL7G28520 Arabidopsis lyrata HOM05D004430 ORTHO05D005088 7.8e-167 592.8 1608 34.3
Thhalv10024214m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 1.2e-164 585.5 1632 32.7
Carub.0007s1638 Capsella rubella HOM05D004430 ORTHO05D005088 4.7e-164 583.6 1586 33.7
Aa31LG4G9770 Aethionema arabicum HOM05D004430 ORTHO05D005088 1.0e-163 582.4 1609 35.1
BolC7t45865H Brassica oleracea HOM05D004430 ORTHO05D005088 4.1e-160 570.5 1621 33.6
C07p53740 Brassica napus HOM05D004430 ORTHO05D005088 5.4e-160 570.1 1620 33.5
BraA03t14619Z Brassica rapa HOM05D004430 ORTHO05D005088 2.3e-158 564.7 1620 33.6
Lsat_1_v5_gn_4_75700 Lactuca sativa HOM05D004430 ORTHO05D005088 3.0e-158 564.3 1187 38.7
A03p55450 Brassica napus HOM05D004430 ORTHO05D005088 6.6e-158 563.1 1619 33.6
BcaC06g32869 Brassica carinata HOM05D004430 ORTHO05D005088 2.1e-148 531.6 1615 32.4
C01p20010 Brassica napus HOM05D004430 ORTHO05D005088 8.1e-148 529.6 1622 33.2
A01p16020 Brassica napus HOM05D004430 ORTHO05D005088 1.1e-147 529.3 1625 32.8
PGSC0003DMG402018164 Solanum tuberosum HOM05D004430 ORTHO05D005088 8.9e-147 526.2 1374 35.5
BolC1t01928H Brassica oleracea HOM05D004430 ORTHO05D005088 5.8e-146 523.5 1620 32.5
SGA_v2.0_scaffold7G04148 Striga asiatica HOM05D004430 ORTHO05D005088 7.6e-146 523.1 1660 33.7
BraA01t01536Z Brassica rapa HOM05D004430 ORTHO05D005088 1.1e-144 519.2 1618 32.6
Haze_07543 Corylus avellana HOM05D004430 ORTHO05D005088 3.9e-142 510.8 1605 31.3
Hma1.2p1_0046F.1_g026730 Hydrangea macrophylla HOM05D004430 ORTHO05D005088 3.4e-138 497.7 1219 37.9
HanXRQChr17g0548691 Helianthus annuus HOM05D004430 ORTHO05D005088 2.2e-137 495.0 1484 34.0
TAR622G0490 Trochodendron aralioides HOM05D004430 ORTHO05D005088 2.7e-135 488.0 971 39.3
HanXRQChr11g0348291 Helianthus annuus HOM05D004430 ORTHO05D005088 3.0e-134 484.6 735 44.9
ATR0757G157 Amborella trichopoda HOM05D004430 ORTHO05D005088 6.2e-132 476.9 1681 31.8
BcaC09g50842 Brassica carinata HOM05D004430 ORTHO05D005088 1.0e-126 459.5 1595 31.4
BcaB03g12441 Brassica carinata HOM05D004430 ORTHO05D005088 1.3e-118 432.6 1581 29.9
unitig_37.g12744 Utricularia gibba HOM05D004430 ORTHO05D005088 2.3e-118 431.8 1587 31.1
MBI10_g44386_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 7.6e-114 416.8 1492 31.4
Actinidia19112 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.0e-97 363.2 339 61.7
Actinidia33085 Actinidia chinensis HOM05D004430 ORTHO05D005088 7.4e-85 320.5 698 38.5
Zm00001eb136860 Zea mays HOM05D004430 ORTHO05D005088 5.9e-82 310.8 1662 27.6
Zm00001eb028710 Zea mays HOM05D004430 ORTHO05D005088 1.1e-80 306.6 1535 30.4
SHI17143 Sapria himalayana HOM05D004430 ORTHO05D005088 6.8e-70 270.8 680 34.6
CDE06G0437 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 1.6e-66 259.6 1472 26.1
HPP92_006251 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.7e-65 256.1 1342 28.8
Cpa.g.sc153.6 Carica papaya HOM05D004430 ORTHO05D005088 7.2e-64 250.8 193 71.5
HPP92_024337 Vanilla planifolia HOM05D004430 ORTHO05D005088 2.1e-63 249.2 1291 28.7
MBI10_g44384_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 3.4e-61 241.9 208 64.4
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 4.4e-61 241.5 484 37.4
SEGI_40513 Sequoiadendron giganteum HOM05D004430 ORTHO05D005088 4.1e-59 235.0 1583 26.7
Actinidia19111 Actinidia chinensis HOM05D004430 ORTHO05D005088 6.1e-55 221.1 476 37.2
CDE02G0036 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 1.4e-54 219.9 203 58.6
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 1.4e-51 209.9 1544 27.3
HPP92_006241 Vanilla planifolia HOM05D004430 ORTHO05D005088 2.2e-44 186.0 211 55.5
Psat2g086200 Pisum sativum HOM05D004430 ORTHO05D005088 1.2e-42 180.3 209 56.5
HPP92_024330 Vanilla planifolia HOM05D004430 ORTHO05D005088 3.6e-39 168.7 1279 25.7
Psat2g086240 Pisum sativum HOM05D004430 ORTHO05D005088 6.2e-39 167.9 222 52.7
Psat2g098600 Pisum sativum HOM05D003093 ORTHO05D005088 4.9e-36 158.3 197 54.8
Actinidia33086 Actinidia chinensis HOM05D004430 ORTHO05D005088 3.3e-32 145.6 375 34.9
Pp3c4_23740 Physcomitrium patens HOM05D004430 ORTHO05D005088 4.0e-30 138.7 1448 24.5
TAR622G0342 Trochodendron aralioides HOM05D004430 ORTHO05D005088 8.1e-23 114.4 84 71.4
Mapoly0057s0099 Marchantia polymorpha HOM05D004430 ORTHO05D005088 1.1e-22 114.0 1591 23.8
Psat1g046400 Pisum sativum HOM05D004430 ORTHO05D005088 1.2e-21 110.5 185 47.0
CBR_g19277 Chara braunii HOM05D004430 ORTHO05D005088 6.4e-20 104.8 503 29.4
Pp3c26_2670 Physcomitrium patens HOM05D004430 ORTHO05D005088 6.4e-20 104.8 239 41.8
Pp3c4_22960 Physcomitrium patens HOM05D004430 ORTHO05D005088 1.1e-19 104.0 1374 24.0
Actinidia19337 Actinidia chinensis HOM05D004430 ORTHO05D005088 4.3e-16 92.0 190 38.9
SMO174G0145 Selaginella moellendorffii HOM05D004430 ORTHO05D005088 2.1e-15 89.7 935 24.6
TAR629G1829 Trochodendron aralioides HOM05D003072 ORTHO05D008464 2.1e-15 89.7 151 43.7
THA.LOC104822199 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 1.8e-14 86.7 150 39.3
Pp3c26_2830 Physcomitrium patens HOM05D004430 ORTHO05D005088 2.4e-14 86.3 1462 24.1
TAR622G0951 Trochodendron aralioides HOM05D004430 ORTHO05D005088 4.0e-14 85.5 146 43.8
Psat0s4895g0040 Pisum sativum HOM05D002020 ORTHO05D005088 2.2e-12 79.7 61 70.5
THA.LOC104816711 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 7.4e-08 64.7 312 28.2
AagrBONN_evm.TU.Sc2ySwM_344.4397 Anthoceros agrestis HOM05D004430 ORTHO05D005088 2.1e-07 63.2 1879 23.2
SHI23780 Sapria himalayana HOM05D004430 ORTHO05D005088 6.2e-07 61.6 108 44.4


User provided reference genes

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