Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr12g0201361 Lupinus albus HOM05D003533 ORTHO05D004009 5.5e-40 167.2 83 100.0
Lalb_Chr12g0201351 Lupinus albus HOM05D003533 ORTHO05D004009 4.1e-35 151.0 83 86.7
Medtr4g106500 Medicago truncatula HOM05D003533 ORTHO05D004009 2.5e-24 115.2 81 71.6
Lj4g0015145 Lotus japonicus HOM05D003533 ORTHO05D004009 1.6e-23 112.5 85 64.7
TPR.G37447 Trifolium pratense HOM05D003533 ORTHO05D004009 1.4e-22 109.4 78 70.5
Glyma.05G033600 Glycine max HOM05D003533 ORTHO05D004009 1.8e-22 109.0 79 70.9
Phvul.003G196800 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 8.8e-22 106.7 74 71.6
Glyma.17G093500 Glycine max HOM05D003533 ORTHO05D004009 5.7e-21 104.0 82 65.9
TAR629G1875 Trochodendron aralioides HOM05D003533 ORTHO05D004009 1.4e-19 99.4 81 60.5
Manes.06G100300 Manihot esculenta HOM05D003533 ORTHO05D004009 3.1e-19 98.2 85 58.8
Thecc.03G004200 Theobroma cacao HOM05D003533 ORTHO05D004009 5.3e-19 97.4 84 57.1
Manes.14G070400 Manihot esculenta HOM05D003533 ORTHO05D004009 1.6e-18 95.9 84 57.1
Thecc.03G004000 Theobroma cacao HOM05D003533 ORTHO05D004009 3.5e-18 94.7 84 56.0
QL10p012332 Quercus lobata HOM05D003533 ORTHO05D004009 2.2e-17 92.0 81 58.0
Duzib084G0973 Durio zibethinus HOM05D003533 ORTHO05D004009 3.8e-17 91.3 87 55.2
FAN22G0766 Fragaria x ananassa HOM05D003533 ORTHO05D004009 3.8e-17 91.3 70 62.9
FAN17G1844 Fragaria x ananassa HOM05D003533 ORTHO05D004009 5.0e-17 90.9 70 62.9
Eucgr.B00337 Eucalyptus grandis HOM05D003533 ORTHO05D004009 6.5e-17 90.5 81 55.6
Gohir.D05G321600 Gossypium hirsutum HOM05D003533 ORTHO05D004009 8.5e-17 90.1 77 55.8
Gorai.009G345100 Gossypium raimondii HOM05D003533 ORTHO05D004009 8.5e-17 90.1 77 55.8
Gohir.A05G319400 Gossypium hirsutum HOM05D003533 ORTHO05D004009 1.5e-16 89.4 77 55.8
TWI15G0955 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 1.5e-16 89.4 74 59.5
FAN07G1024 Fragaria x ananassa HOM05D003533 ORTHO05D004009 3.2e-16 88.2 70 61.4
Lsat_1_v5_gn_1_12101 Lactuca sativa HOM05D003533 ORTHO05D004009 4.2e-16 87.8 87 51.7
Glyma.06G186200 Glycine max HOM05D003533 ORTHO05D004009 5.5e-16 87.4 77 59.7
RcHm_v2.0_Chr4g0444801 Rosa chinensis HOM05D003533 ORTHO05D004009 7.2e-16 87.0 70 60.0
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 7.2e-16 87.0 75 57.3
Migut.I00058 Erythranthe guttata HOM05D003533 ORTHO05D004009 9.4e-16 86.7 71 59.2
FAN12G1992 Fragaria x ananassa HOM05D003533 ORTHO05D004009 9.4e-16 86.7 70 61.4
COL.COLO4_37881 Corchorus olitorius HOM05D003533 ORTHO05D004009 1.2e-15 86.3 76 56.6
Hma1.2p1_0160F.1_g070540 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 1.6e-15 85.9 79 57.0
CiPaw.12G022900 Carya illinoinensis HOM05D003533 ORTHO05D004009 3.6e-15 84.7 83 55.4
FvH4_4g35190 Fragaria vesca HOM05D003533 ORTHO05D004009 4.7e-15 84.3 70 60.0
Glyma.04G178500 Glycine max HOM05D003533 ORTHO05D004009 1.0e-14 83.2 77 57.1
Hma1.2p1_0002F.1_g002860 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 1.4e-14 82.8 83 53.0
Aqoxy3G03117 Aquilegia oxysepala HOM05D003533 ORTHO05D004009 1.8e-14 82.4 89 52.8
QL03p067197 Quercus lobata HOM05D003533 ORTHO05D004009 1.8e-14 82.4 76 55.3
ECA247G1125 Erigeron canadensis HOM05D003533 ORTHO05D004009 2.3e-14 82.0 79 50.6
Oeu005054.1 Olea europaea HOM05D003533 ORTHO05D004009 2.3e-14 82.0 74 56.8
CANSAT54G2961 Cannabis sativa HOM05D003533 ORTHO05D004009 3.0e-14 81.6 84 53.6
Nitab4.5_0002059g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 3.0e-14 81.6 79 54.4
TAR622G1413 Trochodendron aralioides HOM05D003533 ORTHO05D004009 4.0e-14 81.3 70 60.0
CSS0013527 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 5.2e-14 80.9 81 56.8
CSS0016862 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 5.2e-14 80.9 81 56.8
MELO3C017124.2 Cucumis melo HOM05D003533 ORTHO05D004009 5.2e-14 80.9 83 50.6
MD14G1187200 Malus domestica HOM05D003533 ORTHO05D004009 5.2e-14 80.9 84 48.8
TWI81G0654 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 5.2e-14 80.9 76 53.9
TPR.G31485 Trifolium pratense HOM05D003533 ORTHO05D004009 6.8e-14 80.5 78 56.4
Sed0002579 Sechium edule HOM05D003533 ORTHO05D004009 8.8e-14 80.1 81 54.3
Peaxi162Scf01141g00003 Petunia axillaris HOM05D003533 ORTHO05D004009 1.5e-13 79.3 81 50.6
Nitab4.5_0002312g0110 Nicotiana tabacum HOM05D003533 ORTHO05D004009 2.0e-13 79.0 71 56.3
vmacro16587 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 2.0e-13 79.0 69 56.5
Oeu005690.1 Olea europaea HOM05D003533 ORTHO05D004009 2.6e-13 78.6 75 54.7
CiPaw.06G076300 Carya illinoinensis HOM05D003533 ORTHO05D004009 3.4e-13 78.2 80 52.5
Rhsim12G0161500 Rhododendron simsii HOM05D003533 ORTHO05D004009 3.4e-13 78.2 69 56.5
CiPaw.06G076000 Carya illinoinensis HOM05D003533 ORTHO05D004009 4.4e-13 77.8 80 52.5
CiPaw.06G076200 Carya illinoinensis HOM05D003533 ORTHO05D004009 4.4e-13 77.8 80 52.5
Lj1g0014022 Lotus japonicus HOM05D003533 ORTHO05D004009 4.4e-13 77.8 77 57.1
MD06G1181300 Malus domestica HOM05D003533 ORTHO05D004009 4.4e-13 77.8 83 49.4
Psat0s489g0040 Pisum sativum HOM05D003533 ORTHO05D004009 4.4e-13 77.8 77 54.5
Ca_16210_v3 Cicer arietinum L. HOM05D003533 ORTHO05D004009 7.5e-13 77.0 77 53.2
PGR083G0433 Punica granatum HOM05D003533 ORTHO05D004009 7.5e-13 77.0 84 47.6
CiPaw.06G076100 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.7e-12 75.9 80 51.2
HanXRQChr09g0237871 Helianthus annuus HOM05D003533 ORTHO05D004009 1.7e-12 75.9 81 48.1
Rhsim12G0161400 Rhododendron simsii HOM05D003533 ORTHO05D004009 1.7e-12 75.9 67 53.7
Nitab4.5_0002059g0090 Nicotiana tabacum HOM05D003533 ORTHO05D004009 2.2e-12 75.5 81 48.1
FAN18G0586 Fragaria x ananassa HOM05D003533 ORTHO05D004009 2.8e-12 75.1 78 55.1
Prupe.5G179600 Prunus persica HOM05D003533 ORTHO05D004009 2.8e-12 75.1 73 54.8
Thecc.02G240400 Theobroma cacao HOM05D003533 ORTHO05D004009 2.8e-12 75.1 76 50.0
Ciclev10023101m.g Citrus clementina HOM05D003533 ORTHO05D004009 3.7e-12 74.7 87 47.1
AT1G19020 Arabidopsis thaliana HOM05D003533 ORTHO05D004009 4.8e-12 74.3 85 44.7
Phvul.009G182200 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 4.8e-12 74.3 77 54.5
Rhsim12G0161300 Rhododendron simsii HOM05D003533 ORTHO05D004009 4.8e-12 74.3 65 49.2
BcaB03g14468 Brassica carinata HOM05D003533 ORTHO05D004009 6.3e-12 73.9 81 48.1
Sp5g13860 Schrenkiella parvula HOM05D003533 ORTHO05D004009 6.3e-12 73.9 74 54.1
PGSC0003DMG400022647 Solanum tuberosum HOM05D003533 ORTHO05D004009 6.3e-12 73.9 70 52.9
CAN.G159.12 Capsicum annuum HOM05D003533 ORTHO05D004009 1.1e-11 73.2 69 49.3
AL1G31580 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 1.4e-11 72.8 83 44.6
CARHR019640 Cardamine hirsuta HOM05D003533 ORTHO05D004009 1.4e-11 72.8 78 47.4
Lsat_1_v5_gn_1_11280 Lactuca sativa HOM05D003533 ORTHO05D004009 1.8e-11 72.4 80 48.8
Aa31LG4G16780 Aethionema arabicum HOM05D003533 ORTHO05D004009 2.4e-11 72.0 79 49.4
CiPaw.11G032200 Carya illinoinensis HOM05D003533 ORTHO05D004009 2.4e-11 72.0 89 46.1
FAN13G2147 Fragaria x ananassa HOM05D003533 ORTHO05D004009 2.4e-11 72.0 93 50.5
Medtr3g078420 Medicago truncatula HOM05D003533 ORTHO05D004009 2.4e-11 72.0 78 50.0
Sopen05g002310 Solanum pennellii HOM05D003533 ORTHO05D004009 2.4e-11 72.0 90 46.7
Solyc05g006390.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 4.1e-11 71.2 83 47.0
AL5G27512 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 5.4e-11 70.9 74 50.0
Carub.0005s1428 Capsella rubella HOM05D003533 ORTHO05D004009 5.4e-11 70.9 73 49.3
Cc11_g14110 Coffea canephora HOM05D003533 ORTHO05D004009 5.4e-11 70.9 82 47.6
CsaV3_1G001820 Cucumis sativus L. HOM05D003533 ORTHO05D004009 5.4e-11 70.9 80 47.5
Eucgr.K02881 Eucalyptus grandis HOM05D003533 ORTHO05D004009 5.4e-11 70.9 82 46.3
Nitab4.5_0002312g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 5.4e-11 70.9 82 48.8
BcaB03g12939 Brassica carinata HOM05D003533 ORTHO05D004009 9.1e-11 70.1 76 48.7
A06p15230 Brassica napus HOM05D003533 ORTHO05D004009 1.2e-10 69.7 84 44.0
BraA06t24637Z Brassica rapa HOM05D003533 ORTHO05D004009 1.2e-10 69.7 84 44.0
Zm00001eb254120 Zea mays HOM05D003533 ORTHO05D004009 1.2e-10 69.7 70 48.6
BcaC07g41276 Brassica carinata HOM05D003533 ORTHO05D004009 1.6e-10 69.3 85 41.2
A09p59550 Brassica napus HOM05D003533 ORTHO05D004009 1.6e-10 69.3 83 43.4
COL.COLO4_21432 Corchorus olitorius HOM05D003533 ORTHO05D004009 1.6e-10 69.3 78 47.4
MBI14_g31148_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D011084 1.6e-10 69.3 69 46.4
Ciclev10033215m.g Citrus clementina HOM05D003533 ORTHO05D004009 2.0e-10 68.9 79 48.1
MBI14_g31145_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 2.7e-10 68.6 77 48.1
MBI14_g31147_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 2.7e-10 68.6 76 44.7
BcaB07g31922 Brassica carinata HOM05D003533 ORTHO05D004009 3.5e-10 68.2 84 42.9
Lsat_1_v5_gn_1_11220 Lactuca sativa HOM05D003533 ORTHO05D004009 3.5e-10 68.2 83 45.8
Aa31LG7G3800 Aethionema arabicum HOM05D006783 ORTHO05D008330 5.9e-10 67.4 72 47.2
Cfa019066 Carpinus fangiana HOM05D003533 ORTHO05D004009 5.9e-10 67.4 51 62.7
Hma1.2p1_0572F.1_g180980 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 5.9e-10 67.4 79 45.6
Thhalv10010873m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 7.7e-10 67.0 77 50.6
Ah.02g112790 Amaranthus hybridus HOM05D003533 ORTHO05D004009 1.0e-09 66.6 86 50.0
Cfa009093 Carpinus fangiana HOM05D003533 ORTHO05D004009 1.0e-09 66.6 89 42.7
Oeu060842.1 Olea europaea HOM05D003533 ORTHO05D004009 1.0e-09 66.6 73 49.3
Sp1g16980 Schrenkiella parvula HOM05D003533 ORTHO05D004009 1.0e-09 66.6 85 41.2
Sc04g0002090 Simmondsia chinensis HOM05D003533 ORTHO05D004009 1.0e-09 66.6 85 45.9
Actinidia19080 Actinidia chinensis HOM05D003533 ORTHO05D004009 1.7e-09 65.9 67 49.3
A08p30040 Brassica napus HOM05D003533 ORTHO05D004009 1.7e-09 65.9 72 47.2
BraA08t34939Z Brassica rapa HOM05D003533 ORTHO05D004009 1.7e-09 65.9 72 47.2
Cc11_g14120 Coffea canephora HOM05D003533 ORTHO05D004009 1.7e-09 65.9 79 51.9
Thhalv10009213m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 1.7e-09 65.9 87 42.5
ATR0712G093 Amborella trichopoda HOM05D003533 ORTHO05D004009 2.9e-09 65.1 77 44.2
Oeu017591.1 Olea europaea HOM05D003533 ORTHO05D004009 2.9e-09 65.1 77 41.6
PSO013G0048 Papaver somniferum HOM05D003533 ORTHO05D004009 3.8e-09 64.7 82 45.1
Sabra15G0095000 Salix brachista HOM05D003533 ORTHO05D004009 3.8e-09 64.7 83 44.6
Sabra15G0095900 Salix brachista HOM05D003533 ORTHO05D004009 3.8e-09 64.7 83 44.6
PGSC0003DMG400024583 Solanum tuberosum HOM05D003533 ORTHO05D004009 3.8e-09 64.7 83 47.0
MD16G1084900 Malus domestica HOM05D003533 ORTHO05D004009 6.5e-09 63.9 71 45.1
Atru.chr11.1939 Acer truncatum HOM05D003533 ORTHO05D004009 8.5e-09 63.5 77 42.9
ATR0712G042 Amborella trichopoda HOM05D003533 ORTHO05D004009 1.1e-08 63.2 77 42.9
Os02g0740600 Oryza sativa ssp. japonica HOM05D003533 ORTHO05D004009 1.1e-08 63.2 76 46.1
Nitab4.5_0003386g0040 Nicotiana tabacum HOM05D003533 ORTHO05D004009 1.5e-08 62.8 84 47.6
Prupe.1G261100 Prunus persica HOM05D003533 ORTHO05D004009 1.5e-08 62.8 75 44.0
Sopen03g032860 Solanum pennellii HOM05D003533 ORTHO05D004009 1.9e-08 62.4 81 44.4
BcaC05g25801 Brassica carinata HOM05D003533 ORTHO05D004009 4.2e-08 61.2 84 41.7
BcaC05g25802 Brassica carinata HOM05D003533 ORTHO05D004009 4.2e-08 61.2 84 41.7
C05p17410 Brassica napus HOM05D003533 ORTHO05D004009 4.2e-08 61.2 84 41.7
BolC5t30441H Brassica oleracea HOM05D003533 ORTHO05D004009 4.2e-08 61.2 84 41.7
PSO013G0065 Papaver somniferum HOM05D003533 ORTHO05D004009 4.2e-08 61.2 86 40.7
ECA247G3580 Erigeron canadensis HOM05D003533 ORTHO05D004009 7.2e-08 60.5 79 49.4
Eucgr.C02738 Eucalyptus grandis HOM05D003533 ORTHO05D004009 7.2e-08 60.5 55 54.5
SalBow2G1603 Salvia bowleyana HOM05D003533 ORTHO05D004009 7.2e-08 60.5 78 44.9
SalBow2G3186 Salvia bowleyana HOM05D003533 ORTHO05D004009 7.2e-08 60.5 78 44.9
CSS0048422 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 9.4e-08 60.1 76 47.4
Actinidia34961 Actinidia chinensis HOM05D003533 ORTHO05D004009 1.2e-07 59.7 83 45.8
HanXRQChr02g0043831 Helianthus annuus HOM05D003533 ORTHO05D222724 1.2e-07 59.7 61 50.8
Solyc03g113810.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 1.2e-07 59.7 82 45.1
Os06g0239200 Oryza sativa ssp. japonica HOM05D003533 ORTHO05D004009 2.7e-07 58.5 69 49.3
CSS0026389 Camellia sinensis var. sinensis HOM05D007037 ORTHO05D006691 3.6e-07 58.2 80 40.0
CARHR156900 Cardamine hirsuta HOM05D003533 ORTHO05D004009 3.6e-07 58.2 77 46.8
DCAR_026103 Daucus carota HOM05D003533 ORTHO05D004009 3.6e-07 58.2 88 45.5
C08p19120 Brassica napus HOM05D003533 ORTHO05D004009 4.7e-07 57.8 49 55.1
BolC8t49535H Brassica oleracea HOM05D003533 ORTHO05D004009 6.1e-07 57.4 49 55.1
Actinidia34960 Actinidia chinensis HOM05D003533 ORTHO05D004009 8.0e-07 57.0 52 57.7
ATR0824G240 Amborella trichopoda HOM05D003533 ORTHO05D004009 8.0e-07 57.0 79 40.5
C08p42830 Brassica napus HOM05D003533 ORTHO05D004009 8.0e-07 57.0 75 41.3
BolC8t51839H Brassica oleracea HOM05D003533 ORTHO05D004009 8.0e-07 57.0 75 41.3
Cc09_g01610 Coffea canephora HOM05D007037 ORTHO05D006691 8.0e-07 57.0 67 41.8
Carub.0001s1865 Capsella rubella HOM05D003533 ORTHO05D004009 1.0e-06 56.6 85 37.6
Migut.L01388 Erythranthe guttata HOM05D003533 ORTHO05D004009 1.0e-06 56.6 83 42.2
BraA09t41332Z Brassica rapa HOM05D003533 ORTHO05D004009 1.4e-06 56.2 75 41.3
EL10Ac5g10833 Beta vulgaris HOM05D003533 ORTHO05D004009 2.3e-06 55.5 73 49.3
Nitab4.5_0009030g0010 Nicotiana tabacum HOM05D007037 ORTHO05D006691 5.2e-06 54.3 68 44.1
Potri.015G070700 Populus trichocarpa HOM05D003533 ORTHO05D004009 5.2e-06 54.3 82 37.8
Rhsim08G0167800 Rhododendron simsii HOM05D003533 ORTHO05D004009 5.2e-06 54.3 35 65.7
Potri.012G075800 Populus trichocarpa HOM05D003533 ORTHO05D004009 8.8e-06 53.5 48 58.3
Rhsim08G0167600 Rhododendron simsii HOM05D003533 ORTHO05D004009 8.8e-06 53.5 51 51.0
THA.LOC104821473 Tarenaya hassleriana HOM05D003533 ORTHO05D004009 8.8e-06 53.5 80 37.5
vmacro16586 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 8.8e-06 53.5 37 59.5


User provided reference genes

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