Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr12g0198051 Lupinus albus HOM05D004002 ORTHO05D004668 0.0e+00 2596.2 1330 100.0
Lalb_Chr13g0301701 Lupinus albus HOM05D004002 ORTHO05D004668 0.0e+00 2279.2 1361 85.4
Glyma.13G158400 Glycine max HOM05D004002 ORTHO05D004668 0.0e+00 2156.7 1346 81.6
Lj4g0004437 Lotus japonicus HOM05D004002 ORTHO05D004668 0.0e+00 2148.6 1325 81.6
Medtr4g114930 Medicago truncatula HOM05D004002 ORTHO05D004668 0.0e+00 2137.5 1331 81.4
Ca_30460_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 0.0e+00 2123.6 1343 80.7
arahy.Tifrunner.gnm1.ann1.S50ZLM Arachis hypogaea HOM05D004002 ORTHO05D004668 0.0e+00 2033.5 1373 76.4
arahy.Tifrunner.gnm1.ann1.R22NLQ Arachis hypogaea HOM05D004002 ORTHO05D004668 0.0e+00 2007.3 1355 76.0
TPR.G26484 Trifolium pratense HOM05D004002 ORTHO05D004668 0.0e+00 1996.1 1329 76.8
CiPaw.03G246900 Carya illinoinensis HOM05D004002 ORTHO05D004668 0.0e+00 1898.6 1344 72.0
RcHm_v2.0_Chr2g0087941 Rosa chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1898.6 1345 72.5
Cfa003405 Carpinus fangiana HOM05D004002 ORTHO05D004668 0.0e+00 1895.6 1354 72.5
CANSAT11G1469 Cannabis sativa HOM05D004002 ORTHO05D004668 0.0e+00 1888.2 1340 71.3
FvH4_1g02820 Fragaria vesca HOM05D004002 ORTHO05D004668 0.0e+00 1882.8 1347 70.6
FAN28G1420 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1879.4 1347 70.6
Prupe.7G246700 Prunus persica HOM05D004002 ORTHO05D004668 0.0e+00 1879.0 1351 71.1
MD02G1028100 Malus domestica HOM05D004002 ORTHO05D004668 0.0e+00 1877.8 1355 70.6
Atru.chr7.1118 Acer truncatum HOM05D004002 ORTHO05D004668 0.0e+00 1866.3 1345 70.9
Thecc.09G129800 Theobroma cacao HOM05D004002 ORTHO05D004668 0.0e+00 1861.7 1346 71.4
FAN19G2815 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1859.0 1383 68.5
Manes.14G114600 Manihot esculenta HOM05D004002 ORTHO05D004668 0.0e+00 1857.4 1337 72.1
TWI32G0682 Tripterygium wilfordii HOM05D004002 ORTHO05D004668 0.0e+00 1854.7 1348 70.0
MD15G1169800 Malus domestica HOM05D004002 ORTHO05D004668 0.0e+00 1853.6 1353 70.7
Duzib168G0398 Durio zibethinus HOM05D004002 ORTHO05D004668 0.0e+00 1837.8 1348 70.3
Actinidia21966 Actinidia chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1823.1 1346 71.2
QL02p089511 Quercus lobata HOM05D004002 ORTHO05D004668 0.0e+00 1822.0 1550 62.8
Potri.018G128400 Populus trichocarpa HOM05D004002 ORTHO05D004668 0.0e+00 1819.7 1358 69.4
FAN23G1361 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1816.6 1346 68.5
COL.COLO4_35123 Corchorus olitorius HOM05D004002 ORTHO05D004668 0.0e+00 1803.9 1351 68.9
ClCG06G011370 Citrullus lanatus HOM05D004002 ORTHO05D004668 0.0e+00 1802.7 1328 70.0
Duzib187G1937 Durio zibethinus HOM05D004002 ORTHO05D004668 0.0e+00 1795.0 1346 69.2
Gohir.A07G036800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1794.6 1345 68.1
Gorai.001G043400 Gossypium raimondii HOM05D004002 ORTHO05D004668 0.0e+00 1792.3 1345 68.1
MELO3C010320.2 Cucumis melo HOM05D004002 ORTHO05D004668 0.0e+00 1785.4 1332 69.4
Gohir.D07G040800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1783.5 1345 67.7
Ciclev10007259m.g Citrus clementina HOM05D004002 ORTHO05D004668 0.0e+00 1773.4 1346 67.7
vmacro20578 Vaccinium macrocarpon HOM05D004002 ORTHO05D004668 0.0e+00 1769.6 1415 65.3
TAR636G2372 Trochodendron aralioides HOM05D004002 ORTHO05D004668 0.0e+00 1767.7 1356 67.9
Rhsim01G0066800 Rhododendron simsii HOM05D004002 ORTHO05D004668 0.0e+00 1762.3 1350 68.1
FAN26G1964 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1756.9 1384 65.5
Gorai.004G276600 Gossypium raimondii HOM05D004002 ORTHO05D004668 0.0e+00 1755.3 1359 67.4
Gohir.A08G238400 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1751.9 1359 67.1
Sc18g0000460 Simmondsia chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1746.5 1360 67.7
Gohir.D08G259100 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1746.1 1368 67.0
Nitab4.5_0001776g0030 Nicotiana tabacum HOM05D004002 ORTHO05D004668 0.0e+00 1740.7 1353 67.2
Cc06_g08210 Coffea canephora HOM05D004002 ORTHO05D004668 0.0e+00 1731.5 1335 67.3
Sopen07g003960 Solanum pennellii HOM05D004002 ORTHO05D004668 0.0e+00 1731.5 1340 66.6
Sed0021658 Sechium edule HOM05D004002 ORTHO05D004668 0.0e+00 1716.8 1323 68.2
Eucgr.C04259 Eucalyptus grandis HOM05D004002 ORTHO05D004668 0.0e+00 1712.2 1314 67.0
THA.LOC104811026 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 0.0e+00 1708.7 1343 65.8
CAN.G138.14 Capsicum annuum HOM05D004002 ORTHO05D004668 0.0e+00 1708.3 1336 65.9
AUR62013328 Chenopodium quinoa HOM05D004002 ORTHO05D004668 0.0e+00 1707.2 1350 66.9
DCAR_014896 Daucus carota HOM05D004002 ORTHO05D004668 0.0e+00 1701.4 1332 66.8
AL5G20770 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 0.0e+00 1701.0 1336 66.1
BcaC08g43677 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1699.9 1326 65.2
Sp1g41730 Schrenkiella parvula HOM05D004002 ORTHO05D004668 0.0e+00 1691.4 1339 65.2
C06p10960 Brassica napus HOM05D004002 ORTHO05D004668 0.0e+00 1691.0 1327 65.0
AT3G33530 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 0.0e+00 1689.9 1333 65.7
Lsat_1_v5_gn_7_43900 Lactuca sativa HOM05D004002 ORTHO05D004668 0.0e+00 1687.5 1343 65.2
BcaB07g33169 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1687.2 1324 65.3
GSVIVG01015557001 Vitis vinifera HOM05D004002 ORTHO05D004668 0.0e+00 1686.8 1276 69.0
HanXRQChr09g0241521 Helianthus annuus HOM05D004002 ORTHO05D004668 0.0e+00 1684.5 1339 66.0
Aqoxy7G02288 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 0.0e+00 1682.5 1367 64.8
Carub.0016s0010 Capsella rubella HOM05D004002 ORTHO05D004668 0.0e+00 1680.6 1335 65.6
BolC6t36178H Brassica oleracea HOM05D004002 ORTHO05D004668 0.0e+00 1680.2 1348 64.1
BraSC56t46385Z Brassica rapa HOM05D004002 ORTHO05D004668 0.0e+00 1677.9 1346 64.2
SalBow1G7082 Salvia bowleyana HOM05D004002 ORTHO05D004668 0.0e+00 1676.4 1342 64.7
CsaV3_1G030400 Cucumis sativus L. HOM05D004002 ORTHO05D004668 0.0e+00 1655.2 1366 65.0
Ah.09g225140 Amaranthus hybridus HOM05D004002 ORTHO05D004668 0.0e+00 1653.6 1353 64.7
Hund26527 Selenicereus undatus HOM05D004002 ORTHO05D004668 0.0e+00 1650.6 1346 63.9
Lsat_1_v5_gn_8_62220 Lactuca sativa HOM05D004002 ORTHO05D004668 0.0e+00 1640.6 1348 64.4
MBI04_g29332_MAGBIO Magnolia biondii HOM05D004002 ORTHO05D004668 0.0e+00 1640.6 1356 64.1
Dinv36495 Davidia involucrata HOM05D004002 ORTHO05D004668 0.0e+00 1640.2 1336 64.9
PSO170G6007 Papaver somniferum HOM05D004002 ORTHO05D004668 0.0e+00 1634.4 1348 63.4
PSO017G4586 Papaver somniferum HOM05D004002 ORTHO05D004668 0.0e+00 1631.3 1351 63.3
Ca_06931_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 0.0e+00 1629.4 999 83.5
HanXRQChr05g0143441 Helianthus annuus HOM05D004002 ORTHO05D004668 0.0e+00 1624.0 1351 62.4
ECA236G2336 Erigeron canadensis HOM05D004002 ORTHO05D004668 0.0e+00 1620.1 1340 63.2
Nn2g12080 Nelumbo nucifera HOM05D004002 ORTHO05D004668 0.0e+00 1617.4 1356 63.3
Aa31LG4G12760 Aethionema arabicum HOM05D004002 ORTHO05D004668 0.0e+00 1609.7 1397 60.7
MSTRG.26413 Avicennia marina HOM05D004002 ORTHO05D004668 0.0e+00 1607.0 1282 65.0
FAN23G2019 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1590.9 1164 69.7
THA.LOC104808973 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 0.0e+00 1577.0 1347 61.0
Thhalv10011188m.g Eutrema salsugineum HOM05D004002 ORTHO05D004668 0.0e+00 1572.4 1247 64.8
EL10Ac8g18695 Beta vulgaris HOM05D004002 ORTHO05D004668 0.0e+00 1556.2 1358 62.1
CDE03G0124 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 0.0e+00 1549.3 1347 60.6
AUR62011160 Chenopodium quinoa HOM05D004002 ORTHO05D004668 0.0e+00 1548.9 1239 65.4
SGA_v2.0_scaffold109G31044 Striga asiatica HOM05D004002 ORTHO05D004668 0.0e+00 1537.7 1400 59.3
DCAR_010315 Daucus carota HOM05D004002 ORTHO05D004668 0.0e+00 1536.2 1342 59.8
Carub.0004s0687 Capsella rubella HOM05D004002 ORTHO05D004668 0.0e+00 1512.7 1342 59.0
AL4G19600 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 0.0e+00 1508.0 1336 59.1
AT2G26610 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 0.0e+00 1501.1 1338 58.9
HPP92_024596 Vanilla planifolia HOM05D004002 ORTHO05D004668 0.0e+00 1464.1 1351 58.1
ATR1120G180 Amborella trichopoda HOM05D004002 ORTHO05D004668 0.0e+00 1460.3 1349 58.5
Aa31LG5G9160 Aethionema arabicum HOM05D004002 ORTHO05D004668 0.0e+00 1454.9 1359 57.2
Sp4g09400 Schrenkiella parvula HOM05D004002 ORTHO05D004668 0.0e+00 1424.1 1338 56.2
BcaC01g04911 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1421.8 1333 56.3
A03p26850 Brassica napus HOM05D004002 ORTHO05D004668 0.0e+00 1421.8 1329 56.4
BraA03t11897Z Brassica rapa HOM05D004002 ORTHO05D004668 0.0e+00 1421.8 1329 56.4
Zm00001eb231770 Zea mays HOM05D004002 ORTHO05D004668 0.0e+00 1420.6 1345 57.0
Psat4g037880 Pisum sativum HOM05D004002 ORTHO05D004668 0.0e+00 1419.4 915 78.9
C03p32190 Brassica napus HOM05D004002 ORTHO05D004668 0.0e+00 1415.6 1332 56.1
BolC3t15561H Brassica oleracea HOM05D004002 ORTHO05D004668 0.0e+00 1411.4 1333 56.0
Sabra18G0109200 Salix brachista HOM05D004002 ORTHO05D004668 0.0e+00 1406.7 1052 70.5
BcaB01g03030 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1401.3 1332 56.2
Nitab4.5_0000028g0120 Nicotiana tabacum HOM05D004002 ORTHO05D004668 0.0e+00 1399.8 1102 65.4
VMungo1215G3423 Vigna mungo HOM05D004002 ORTHO05D004668 0.0e+00 1384.8 845 83.6
Phvul.003G167101 Phaseolus vulgaris HOM05D004002 ORTHO05D004668 0.0e+00 1380.9 847 83.9
Sed0028143 Sechium edule HOM05D004002 ORTHO05D004668 0.0e+00 1354.0 1011 70.2
Dinv41488 Davidia involucrata HOM05D004002 ORTHO05D004668 0.0e+00 1326.2 940 72.9
Cpa.g.sc46.23 Carica papaya HOM05D004002 ORTHO05D004668 0.0e+00 1307.0 1434 52.9
SEGI_17541 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 0.0e+00 1234.2 1271 52.5
Lj7C426G10 Lonicera japonica HOM05D004002 ORTHO05D004668 0.0e+00 1218.8 1009 66.5
Peaxi162Scf00891g00220 Petunia axillaris HOM05D004002 ORTHO05D004668 0.0e+00 1207.6 996 65.4
unitig_748.g7159 Utricularia gibba HOM05D004002 ORTHO05D004668 0.0e+00 1184.5 1373 50.5
ECA240G2868 Erigeron canadensis HOM05D004002 ORTHO05D004668 0.0e+00 1179.1 829 72.6
Pp3c7_2590 Physcomitrium patens HOM05D004002 ORTHO05D004668 0.0e+00 1097.8 1382 45.7
Pp3c11_23650 Physcomitrium patens HOM05D004002 ORTHO05D004668 0.0e+00 1088.6 1378 45.1
Mapoly0041s0113 Marchantia polymorpha HOM05D004002 ORTHO05D004668 9.1e-312 1074.3 1402 45.6
Migut.K00437 Erythranthe guttata HOM05D004002 ORTHO05D004668 2.4e-302 1042.7 869 62.5
Os02g0137000 Oryza sativa ssp. japonica HOM05D004002 ORTHO05D004668 8.5e-284 981.1 754 68.3
Nn8g39500 Nelumbo nucifera HOM05D004002 ORTHO05D004668 8.2e-263 911.4 641 73.5
SMO347G0439 Selaginella moellendorffii HOM05D004002 ORTHO05D004668 1.8e-262 910.2 1087 48.3
AagrBONN_evm.TU.Sc2ySwM_368.2316 Anthoceros agrestis HOM05D004002 ORTHO05D004668 1.5e-259 900.6 1068 49.2
CARHR153610 Cardamine hirsuta HOM05D004002 ORTHO05D004668 8.8e-249 864.8 614 70.8
CBR_g41081 Chara braunii HOM05D004002 ORTHO05D004668 1.6e-242 844.0 1537 36.5
Haze_25542 Corylus avellana HOM05D004002 ORTHO05D004668 2.0e-229 800.4 671 64.5
Haze_25541 Corylus avellana HOM05D004002 ORTHO05D004668 4.6e-213 746.1 925 49.6
CsaV3_UNG026150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 5.8e-208 729.2 752 55.6
Psat4g037920 Pisum sativum HOM05D004002 ORTHO05D004668 1.9e-203 714.1 423 85.8
VMungo1215G0854 Vigna mungo HOM05D004002 ORTHO05D004668 5.8e-200 702.6 501 70.5
SHI03370 Sapria himalayana HOM05D004002 ORTHO05D000023 4.3e-179 633.3 570 58.4
Haze_25536 Corylus avellana HOM05D004002 ORTHO05D004668 1.9e-171 607.8 418 74.6
CsaV3_UNG023150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 3.3e-171 607.1 564 60.8
Migut.K00436 Erythranthe guttata HOM05D004002 ORTHO05D004668 1.9e-158 564.7 421 70.8
Oeu040328.1 Olea europaea HOM05D004002 ORTHO05D004668 2.4e-145 521.2 361 70.1
Ca_06930_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 1.1e-134 485.7 338 72.2
Oeu012614.1 Olea europaea HOM05D004002 ORTHO05D004668 9.8e-115 419.5 513 45.6
ECA240G1422 Erigeron canadensis HOM05D004002 ORTHO05D004668 5.4e-113 413.7 410 54.4
Lj7A426T59 Lonicera japonica HOM05D004002 ORTHO05D004668 1.9e-105 388.7 328 57.9
Sabra18G0109300 Salix brachista HOM05D004002 ORTHO05D004668 3.5e-104 384.4 334 57.8
Solyc07g008090.4 Solanum lycopersicum HOM05D004002 ORTHO05D004668 5.6e-102 377.1 323 56.7
SHI03372 Sapria himalayana HOM05D004002 ORTHO05D004668 2.1e-93 348.6 319 54.9
Hund09270 Selenicereus undatus HOM05D004002 ORTHO05D004668 2.1e-93 348.6 259 69.5
Aqoxy7G02287 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 1.5e-91 342.4 351 49.0
Solyc07g008075.1 Solanum lycopersicum HOM05D004002 ORTHO05D004668 3.5e-88 331.3 222 79.3
Haze_13487 Corylus avellana HOM05D004002 ORTHO05D004668 1.6e-80 305.8 235 63.0
SEGI_36835 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 5.3e-68 264.2 317 43.2
Os02g0136933 Oryza sativa ssp. japonica HOM05D004002 ORTHO05D004668 3.4e-67 261.5 343 42.6
CDE04G2506 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 2.4e-60 238.8 279 51.6
SHI03368 Sapria himalayana HOM05D004002 ORTHO05D004668 5.3e-60 237.7 220 62.3
Dinv41489 Davidia involucrata HOM05D004002 ORTHO05D004668 2.5e-57 228.8 252 52.8
Haze_18451 Corylus avellana HOM05D004002 ORTHO05D004668 1.7e-45 189.5 129 68.2
TPR.G35745 Trifolium pratense HOM05D004002 ORTHO05D004668 1.6e-40 172.9 138 67.4
Lsat_1_v5_gn_0_43201 Lactuca sativa HOM05D004002 ORTHO05D004668 2.2e-37 162.5 115 73.0
Oeu040327.1 Olea europaea HOM05D004002 ORTHO05D004668 4.8e-37 161.4 118 67.8
BcaB07g33170 Brassica carinata HOM05D004002 ORTHO05D002109 5.0e-34 151.4 232 42.7
Lsat_1_v5_gn_8_63461 Lactuca sativa HOM05D004002 ORTHO05D004668 2.3e-31 142.5 202 44.6
SHI03369 Sapria himalayana HOM05D004002 ORTHO05D004668 4.8e-29 134.8 96 66.7
Medtr8g073750 Medicago truncatula HOM05D004002 ORTHO05D004668 4.2e-25 121.7 130 51.5
Hund09269 Selenicereus undatus HOM05D004002 ORTHO05D004668 2.1e-24 119.4 86 65.1
QL02p089531 Quercus lobata HOM05D004002 ORTHO05D004668 2.4e-20 105.9 76 73.7
C09p47760 Brassica napus HOM05D004002 ORTHO05D004668 1.0e-18 100.5 61 73.8
Cre10.g449950 Chlamydomonas reinhardtii HOM05D004002 ORTHO05D004668 1.0e-18 100.5 393 24.4
BolC8t50699H Brassica oleracea HOM05D004002 ORTHO05D004668 1.7e-18 99.8 68 66.2
C04p60270 Brassica napus HOM05D004002 ORTHO05D004668 3.8e-18 98.6 61 72.1
BolC6t36594H Brassica oleracea HOM05D004002 ORTHO05D004668 8.6e-18 97.4 68 64.7
C06p14160 Brassica napus HOM05D004002 ORTHO05D004668 1.6e-16 93.2 58 70.7
Sp1g38940 Schrenkiella parvula HOM05D004002 ORTHO05D004668 3.6e-16 92.0 92 56.5
ECA240G3712 Erigeron canadensis HOM05D004002 ORTHO05D004668 1.2e-14 87.0 87 54.0
PSO541G4337 Papaver somniferum HOM05D004002 ORTHO05D004668 3.4e-14 85.5 81 56.8
TPR.G35747 Trifolium pratense HOM05D004002 ORTHO05D004668 1.7e-10 73.2 84 48.8
Aqoxy7G02056 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 2.9e-10 72.4 101 44.6
HanXRQChr14g0456471 Helianthus annuus HOM05D000103 ORTHO05D000001 1.8e-07 63.2 32 93.8


User provided reference genes

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