Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0075991 Lupinus albus HOM05D004917 ORTHO05D005954 3.1e-153 545.0 266 100.0
Glyma.17G158500 Glycine max HOM05D004917 ORTHO05D005954 1.7e-95 353.2 262 69.1
Psat4g080360 Pisum sativum HOM05D004917 ORTHO05D005954 6.6e-95 351.3 252 72.6
Ca_22095_v3 Cicer arietinum L. HOM05D004917 ORTHO05D005954 7.3e-94 347.8 255 71.0
Medtr4g097500 Medicago truncatula HOM05D004917 ORTHO05D005954 6.2e-93 344.7 261 69.0
Lj4g0024725 Lotus japonicus HOM05D004917 ORTHO05D005954 8.9e-92 340.9 253 68.4
Phvul.003G232900 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 8.9e-92 340.9 258 68.2
Glyma.17G158400 Glycine max HOM05D004917 ORTHO05D005954 2.6e-91 339.3 258 68.2
QL06p038930 Quercus lobata HOM05D004917 ORTHO05D005954 1.7e-90 336.7 236 68.6
VMungo0251G1412 Vigna mungo HOM05D004917 ORTHO05D005954 4.9e-90 335.1 259 66.8
arahy.Tifrunner.gnm1.ann1.1K25L2 Arachis hypogaea HOM05D004917 ORTHO05D005954 7.0e-89 331.3 226 73.5
Sabra14G0006700 Salix brachista HOM05D004917 ORTHO05D005954 1.6e-88 330.1 229 69.4
Atru.chr3.1060 Acer truncatum HOM05D004917 ORTHO05D005954 2.0e-88 329.7 193 80.8
Phvul.003G232800 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 2.0e-88 329.7 257 66.9
Eucgr.H02332 Eucalyptus grandis HOM05D004917 ORTHO05D005954 2.7e-88 329.3 192 79.7
Cfa004388 Carpinus fangiana HOM05D004917 ORTHO05D005954 3.5e-88 328.9 204 77.9
Prupe.6G216800 Prunus persica HOM05D004917 ORTHO05D005954 3.5e-88 328.9 273 64.8
Thecc.01G076300 Theobroma cacao HOM05D004917 ORTHO05D005954 4.6e-88 328.6 243 68.3
Hma1.2p1_0424F.1_g150480 Hydrangea macrophylla HOM05D004917 ORTHO05D005954 6.0e-88 328.2 246 69.5
Potri.014G012100 Populus trichocarpa HOM05D004917 ORTHO05D005954 1.3e-87 327.0 231 69.3
Ciclev10026314m.g Citrus clementina HOM05D004917 ORTHO05D005954 1.7e-87 326.6 213 74.2
TAR628G1580 Trochodendron aralioides HOM05D004917 ORTHO05D005954 1.7e-87 326.6 204 77.5
arahy.Tifrunner.gnm1.ann1.UB5R5Q Arachis hypogaea HOM05D004917 ORTHO05D005954 2.3e-87 326.2 211 76.3
GSVIVG01004399001 Vitis vinifera HOM05D004917 ORTHO05D005954 3.9e-87 325.5 209 76.6
Sc07g0000430 Simmondsia chinensis HOM05D004917 ORTHO05D005954 6.6e-87 324.7 193 78.8
Cc07_g07360 Coffea canephora HOM05D004917 ORTHO05D005954 2.5e-86 322.8 242 65.7
TWI74G1062 Tripterygium wilfordii HOM05D004917 ORTHO05D005954 4.3e-86 322.0 228 68.9
Gorai.011G108500 Gossypium raimondii HOM05D004917 ORTHO05D005954 2.8e-85 319.3 250 65.6
Rhsim08G0090300 Rhododendron simsii HOM05D004917 ORTHO05D005954 2.8e-85 319.3 193 77.2
COL.COLO4_11615 Corchorus olitorius HOM05D004917 ORTHO05D005954 3.6e-85 318.9 221 69.7
Actinidia16409 Actinidia chinensis HOM05D004917 ORTHO05D005954 8.1e-85 317.8 236 66.9
Cpa.g.sc673.2 Carica papaya HOM05D004917 ORTHO05D005954 1.1e-84 317.4 215 72.6
FAN23G1748 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.4e-84 317.0 253 64.4
Gohir.D10G098900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 1.4e-84 317.0 250 65.2
RcHm_v2.0_Chr2g0108751 Rosa chinensis HOM05D004917 ORTHO05D005954 1.4e-84 317.0 253 65.2
Gohir.A10G089200 Gossypium hirsutum HOM05D004917 ORTHO05D005954 1.8e-84 316.6 250 65.2
Gorai.008G085700 Gossypium raimondii HOM05D004917 ORTHO05D005954 1.8e-84 316.6 235 66.8
Sed0017274 Sechium edule HOM05D004917 ORTHO05D005954 3.1e-84 315.8 188 79.8
COL.COLO4_11616 Corchorus olitorius HOM05D004917 ORTHO05D005954 4.0e-84 315.5 221 70.1
Manes.13G109000 Manihot esculenta HOM05D004917 ORTHO05D005954 4.0e-84 315.5 256 63.3
Duzib147G0189 Durio zibethinus HOM05D004917 ORTHO05D005954 5.2e-84 315.1 215 71.2
vmacro18012 Vaccinium macrocarpon HOM05D004917 ORTHO05D005954 5.2e-84 315.1 206 72.8
Nn5g30667 Nelumbo nucifera HOM05D004917 ORTHO05D005954 6.8e-84 314.7 230 69.6
CANSAT01G2436 Cannabis sativa HOM05D004917 ORTHO05D005954 1.2e-83 313.9 193 77.2
RcHm_v2.0_Chr2g0108761 Rosa chinensis HOM05D004917 ORTHO05D005954 1.2e-83 313.9 208 75.0
FvH4_1g18250 Fragaria vesca HOM05D004917 ORTHO05D005954 2.0e-83 313.2 208 74.5
VMungo0251G2665 Vigna mungo HOM05D004917 ORTHO05D005954 2.6e-83 312.8 258 62.4
PSO017G2968 Papaver somniferum HOM05D004917 ORTHO05D005954 3.4e-83 312.4 247 66.8
FvH4_1g18230 Fragaria vesca HOM05D004917 ORTHO05D005954 4.4e-83 312.0 253 63.6
FAN19G0182 Fragaria x ananassa HOM05D004917 ORTHO05D005954 4.4e-83 312.0 253 63.6
MD02G1189600 Malus domestica HOM05D004917 ORTHO05D005954 4.4e-83 312.0 253 63.6
PGSC0003DMG400003322 Solanum tuberosum HOM05D004917 ORTHO05D005954 4.4e-83 312.0 265 61.5
CiPaw.01G001900 Carya illinoinensis HOM05D004917 ORTHO05D005954 5.8e-83 311.6 259 62.5
Eucgr.H02333 Eucalyptus grandis HOM05D004917 ORTHO05D005954 7.5e-83 311.2 207 72.9
CAN.G775.1 Capsicum annuum HOM05D004917 ORTHO05D005954 9.9e-83 310.8 234 65.8
Gohir.D12G076900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 1.3e-82 310.5 211 69.2
Thecc.01G076400 Theobroma cacao HOM05D004917 ORTHO05D005954 2.2e-82 309.7 248 64.5
GSVIVG01007444001 Vitis vinifera HOM05D004917 ORTHO05D005954 2.2e-82 309.7 235 66.8
Aqoxy1G00260 Aquilegia oxysepala HOM05D004917 ORTHO05D005954 3.7e-82 308.9 220 68.6
Sopen02g014680 Solanum pennellii HOM05D004917 ORTHO05D005954 4.9e-82 308.5 192 74.5
Zm00001eb215580 Zea mays HOM05D004917 ORTHO05D005954 1.1e-81 307.4 208 70.7
Os03g0729200 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 3.2e-81 305.8 211 71.1
FAN26G0787 Fragaria x ananassa HOM05D004917 ORTHO05D005954 9.2e-81 304.3 208 73.1
SalBow5G1886 Salvia bowleyana HOM05D004917 ORTHO05D005954 9.2e-81 304.3 236 64.0
EL10Ac6g15593 Beta vulgaris HOM05D004917 ORTHO05D005954 1.2e-80 303.9 263 60.1
DCAR_014953 Daucus carota HOM05D004917 ORTHO05D005954 1.6e-80 303.5 194 72.7
PSO170G3850 Papaver somniferum HOM05D004917 ORTHO05D005954 4.6e-80 302.0 246 65.4
Lsat_1_v5_gn_4_160020 Lactuca sativa HOM05D004917 ORTHO05D005954 7.8e-80 301.2 264 61.4
CsaV3_2G016370 Cucumis sativus L. HOM05D004917 ORTHO05D005954 1.0e-79 300.8 254 62.6
FvH4_1g18251 Fragaria vesca HOM05D004917 ORTHO05D005954 1.3e-79 300.4 194 74.7
HanXRQChr09g0262071 Helianthus annuus HOM05D004917 ORTHO05D005954 1.3e-79 300.4 244 61.9
PGR102G2131 Punica granatum HOM05D004917 ORTHO05D005954 2.3e-79 299.7 204 71.6
GSVIVG01007168001 Vitis vinifera HOM05D004917 ORTHO05D005954 3.9e-79 298.9 160 85.6
Ah.03g140710 Amaranthus hybridus HOM05D004917 ORTHO05D005954 6.6e-79 298.1 194 73.7
FAN19G2004 Fragaria x ananassa HOM05D004917 ORTHO05D005954 6.6e-79 298.1 199 74.9
AUR62007540 Chenopodium quinoa HOM05D004917 ORTHO05D005954 2.5e-78 296.2 193 72.5
ECA232G4556 Erigeron canadensis HOM05D004917 ORTHO05D005954 5.6e-78 295.0 249 61.8
Migut.L00432 Erythranthe guttata HOM05D004917 ORTHO05D005954 5.6e-78 295.0 207 67.6
Oeu013341.1 Olea europaea HOM05D004917 ORTHO05D005954 1.6e-77 293.5 158 84.8
PSO170G3322 Papaver somniferum HOM05D004917 ORTHO05D005954 1.6e-77 293.5 204 69.6
SEGI_14750 Sequoiadendron giganteum HOM05D004917 ORTHO05D005954 1.6e-77 293.5 194 70.1
AL8G43550 Arabidopsis lyrata HOM05D004917 ORTHO05D005954 2.1e-77 293.1 208 67.8
BcaC04g23243 Brassica carinata HOM05D004917 ORTHO05D005954 2.1e-77 293.1 188 70.7
Sp2g28930 Schrenkiella parvula HOM05D004917 ORTHO05D005954 2.1e-77 293.1 192 71.9
AT5G65840 Arabidopsis thaliana HOM05D004917 ORTHO05D005954 2.8e-77 292.7 208 67.3
Carub.0008s2673 Capsella rubella HOM05D004917 ORTHO05D005954 2.8e-77 292.7 192 71.4
Thhalv10004770m.g Eutrema salsugineum HOM05D004917 ORTHO05D005954 3.6e-77 292.4 224 64.7
AUR62004032 Chenopodium quinoa HOM05D004917 ORTHO05D005954 4.7e-77 292.0 193 71.5
C09p10750 Brassica napus HOM05D004917 ORTHO05D005954 6.2e-77 291.6 188 70.7
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 1.8e-76 290.0 206 68.4
BolC9t53970H Brassica oleracea HOM05D004917 ORTHO05D005954 1.8e-76 290.0 188 69.7
A09p09210 Brassica napus HOM05D004917 ORTHO05D005954 3.1e-76 289.3 187 70.1
ATR0739G130 Amborella trichopoda HOM05D004917 ORTHO05D005954 6.8e-76 288.1 190 71.6
Lj4A165T49 Lonicera japonica HOM05D004917 ORTHO05D005954 6.8e-76 288.1 230 65.2
THA.LOC104827747 Tarenaya hassleriana HOM05D004917 ORTHO05D005954 6.8e-76 288.1 206 68.4
PSO017G2694 Papaver somniferum HOM05D004917 ORTHO05D005954 1.2e-75 287.3 203 69.0
BcaB04g20033 Brassica carinata HOM05D004917 ORTHO05D005954 2.0e-75 286.6 243 58.0
BcaB04g20036 Brassica carinata HOM05D004917 ORTHO05D005954 2.0e-75 286.6 243 58.0
BraA09t36573Z Brassica rapa HOM05D004917 ORTHO05D005954 9.9e-75 284.3 257 56.8
DCAR_000455 Daucus carota HOM05D004917 ORTHO05D005954 1.3e-74 283.9 160 78.8
Nitab4.5_0000036g0150 Nicotiana tabacum HOM05D004917 ORTHO05D005954 1.3e-74 283.9 161 79.5
Haze_15025 Corylus avellana HOM05D004917 ORTHO05D005954 1.7e-74 283.5 188 73.4
ClCG02G012210 Citrullus lanatus HOM05D004917 ORTHO05D005954 6.4e-74 281.6 197 70.6
FAN28G2407 Fragaria x ananassa HOM05D004917 ORTHO05D005954 6.4e-74 281.6 206 69.4
CARHR279840 Cardamine hirsuta HOM05D004917 ORTHO05D005954 8.4e-74 281.2 266 54.9
RcHm_v2.0_Chr2g0108771 Rosa chinensis HOM05D004917 ORTHO05D005954 9.2e-73 277.7 198 70.7
PSO017G4293 Papaver somniferum HOM05D004917 ORTHO05D005954 3.5e-72 275.8 210 67.1
PSO170G4503 Papaver somniferum HOM05D004917 ORTHO05D005954 3.9e-71 272.3 193 70.5
CSS0005558 Camellia sinensis var. sinensis HOM05D004917 ORTHO05D005954 1.1e-70 270.8 241 60.2
FAN26G1896 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.5e-70 270.4 253 59.3
SGA_v2.0_scaffold79G25603 Striga asiatica HOM05D004917 ORTHO05D005954 4.3e-70 268.9 185 70.3
MELO3C020846.2 Cucumis melo HOM05D004917 ORTHO05D005954 1.2e-69 267.3 251 58.2
Peaxi162Scf00449g00417 Petunia axillaris HOM05D004917 ORTHO05D005954 1.4e-68 263.8 253 57.7
Migut.L00430 Erythranthe guttata HOM05D004917 ORTHO05D005954 4.4e-67 258.8 187 67.4
CDE02G4371 Ceratophyllum demersum HOM05D004917 ORTHO05D005954 6.4e-66 255.0 239 55.2
Dinv26959 Davidia involucrata HOM05D004917 ORTHO05D005954 2.4e-65 253.1 153 79.7
Os03g0729300 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 6.6e-63 245.0 200 61.0
Hund16417 Selenicereus undatus HOM05D004917 ORTHO05D005954 3.8e-58 229.2 145 75.2
Nitab4.5_0007379g0030 Nicotiana tabacum HOM05D004917 ORTHO05D005954 6.4e-58 228.4 275 50.9
Pp3c27_7100 Physcomitrium patens HOM05D004917 ORTHO05D005954 7.1e-57 224.9 238 45.8
MBI16_g06077_MAGBIO Magnolia biondii HOM05D004917 ORTHO05D005954 4.6e-56 222.2 209 59.8
Zm00001eb056030 Zea mays HOM05D004917 ORTHO05D005954 9.0e-52 208.0 131 71.8
AagrBONN_evm.TU.Sc2ySwM_368.1530 Anthoceros agrestis HOM05D004917 ORTHO05D005954 2.1e-48 196.8 197 47.2
FAN23G2689 Fragaria x ananassa HOM05D004917 ORTHO05D005954 4.6e-48 195.7 152 67.8
unitig_37.g11996 Utricularia gibba HOM05D004917 ORTHO05D005954 3.9e-47 192.6 135 69.6
QL06p038908 Quercus lobata HOM05D004917 ORTHO05D005954 1.1e-46 191.0 102 85.3
GSVIVG01004400001 Vitis vinifera HOM05D004917 ORTHO05D005954 2.8e-45 186.4 103 80.6
ATR0739G160 Amborella trichopoda HOM05D004917 ORTHO05D005954 6.7e-39 165.2 108 66.7
FAN28G0406 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.4e-31 141.0 101 67.3
GSVIVG01007167001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.0e-26 124.8 135 54.1
QL06p038910 Quercus lobata HOM05D004917 ORTHO05D005954 8.5e-26 121.7 86 67.4
QL02p069743 Quercus lobata HOM05D004917 ORTHO05D005954 1.2e-24 117.9 89 64.0
FAN26G2723 Fragaria x ananassa HOM05D004917 ORTHO05D005954 3.6e-24 116.3 187 38.5
MCO14G127 Micromonas commoda HOM05D004917 ORTHO05D005954 8.8e-23 111.7 159 38.4
Potri.007G007201 Populus trichocarpa HOM05D004917 ORTHO05D005954 7.4e-22 108.6 68 80.9
Sabra07G0005500 Salix brachista HOM05D004917 ORTHO05D005954 3.7e-21 106.3 153 46.4
arahy.Tifrunner.gnm1.ann1.F27BB1 Arachis hypogaea HOM05D004917 ORTHO05D005954 1.1e-17 94.7 53 83.0
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 1.4e-15 87.8 222 28.4
SMO353G0397 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 1.8e-15 87.4 177 33.3
Zm00001eb030360 Zea mays HOM05D004917 ORTHO05D005954 2.3e-15 87.0 54 77.8
PRCOL_00004664 Prasinoderma coloniale HOM05D004917 ORTHO05D005954 2.6e-14 83.6 133 36.8
AagrBONN_evm.TU.Sc2ySwM_344.3825 Anthoceros agrestis HOM05D007024 ORTHO05D008865 9.7e-14 81.6 130 34.6
CDE04G0730 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 1.6e-11 74.3 258 28.7
MCO06G061 Micromonas commoda HOM05D004917 ORTHO05D005954 5.9e-11 72.4 131 35.1
Cre17.g697050 Chlamydomonas reinhardtii HOM05D004917 ORTHO05D005954 4.2e-09 66.2 232 26.3
MCO07G374 Micromonas commoda HOM05D004917 ORTHO05D005954 1.6e-08 64.3 82 41.5
Haze_02356 Corylus avellana HOM05D004917 ORTHO05D005954 2.1e-08 63.9 36 83.3
PRCOL_00002665 Prasinoderma coloniale HOM05D006376 ORTHO05D008046 4.0e-07 59.7 112 33.0


User provided reference genes

Program Settings