Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0074801 Lupinus albus HOM05D005029 ORTHO05D006052 5.7e-161 570.9 288 100.0
Glyma.09G059300 Glycine max HOM05D005029 ORTHO05D006052 3.9e-109 398.7 292 76.7
Phvul.009G236500 Phaseolus vulgaris HOM05D005029 ORTHO05D006052 7.3e-108 394.4 293 76.5
Glyma.15G165600 Glycine max HOM05D005029 ORTHO05D006052 4.8e-107 391.7 279 78.5
VMungo1309G1415 Vigna mungo HOM05D005029 ORTHO05D006052 2.4e-106 389.4 294 76.5
Medtr2g037940 Medicago truncatula HOM05D005029 ORTHO05D006052 5.3e-106 388.3 295 74.2
Ca_02102_v3 Cicer arietinum L. HOM05D005029 ORTHO05D006052 1.5e-105 386.7 295 74.2
Lj6g0016757 Lotus japonicus HOM05D005029 ORTHO05D006052 1.5e-105 386.7 297 74.4
TPR.G7936 Trifolium pratense HOM05D005029 ORTHO05D006052 5.6e-100 368.2 297 71.7
Psat1g145480 Pisum sativum HOM05D005029 ORTHO05D006052 1.2e-97 360.5 300 69.3
arahy.Tifrunner.gnm1.ann1.K38ATV Arachis hypogaea HOM05D005029 ORTHO05D006052 9.3e-95 350.9 313 67.7
Haze_22015 Corylus avellana HOM05D005029 ORTHO05D006052 6.0e-94 348.2 286 71.0
Cfa013448 Carpinus fangiana HOM05D005029 ORTHO05D006052 2.1e-91 339.7 286 69.9
Dinv41171 Davidia involucrata HOM05D005029 ORTHO05D006052 1.4e-90 337.0 278 69.4
Duzib170G0048 Durio zibethinus HOM05D005029 ORTHO05D006052 5.3e-90 335.1 289 66.4
Lalb_Chr13g0300031 Lupinus albus HOM05D005029 ORTHO05D006052 1.4e-87 327.0 291 67.4
CANSAT11G1104 Cannabis sativa HOM05D005029 ORTHO05D006052 2.5e-87 326.2 291 69.4
CiPaw.08G032800 Carya illinoinensis HOM05D005029 ORTHO05D006052 5.5e-87 325.1 278 66.9
Cpa.g.c27842.2 Carica papaya HOM05D005029 ORTHO05D006052 3.5e-86 322.4 298 64.4
COL.COLO4_08419 Corchorus olitorius HOM05D005029 ORTHO05D006052 4.6e-86 322.0 266 66.2
Gohir.A13G208700 Gossypium hirsutum HOM05D005029 ORTHO05D006052 5.1e-85 318.5 291 64.3
CiPaw.07G196600 Carya illinoinensis HOM05D005029 ORTHO05D006052 6.7e-85 318.2 296 63.9
Duzib150G1033 Durio zibethinus HOM05D005029 ORTHO05D006052 8.7e-85 317.8 285 64.9
Gohir.D13G213100 Gossypium hirsutum HOM05D005029 ORTHO05D006052 8.7e-85 317.8 292 64.7
Gorai.013G243400 Gossypium raimondii HOM05D005029 ORTHO05D006052 8.7e-85 317.8 292 64.7
Thecc.09G185600 Theobroma cacao HOM05D005029 ORTHO05D006052 1.6e-83 313.5 287 64.8
EL10Ac8g18332 Beta vulgaris HOM05D005029 ORTHO05D006052 1.1e-79 300.8 292 60.6
Potri.006G075900 Populus trichocarpa HOM05D005029 ORTHO05D006052 1.4e-79 300.4 292 60.3
Potri.018G143000 Populus trichocarpa HOM05D005029 ORTHO05D006052 2.7e-78 296.2 292 62.7
AUR62021347 Chenopodium quinoa HOM05D005029 ORTHO05D006052 3.6e-78 295.8 283 62.9
Sabra06G0056600 Salix brachista HOM05D005029 ORTHO05D006052 7.9e-78 294.7 310 57.4
AUR62033261 Chenopodium quinoa HOM05D005029 ORTHO05D006052 1.0e-77 294.3 284 63.4
MD16G1249500 Malus domestica HOM05D005029 ORTHO05D006052 1.3e-77 293.9 292 59.2
Prupe.1G076300 Prunus persica HOM05D005029 ORTHO05D006052 3.0e-77 292.7 295 59.0
TWI34G0612 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 9.7e-76 287.7 286 61.5
Manes.06G020200 Manihot esculenta HOM05D005029 ORTHO05D006052 1.3e-75 287.3 293 59.4
Sabra18G0116800 Salix brachista HOM05D005029 ORTHO05D006052 4.8e-75 285.4 293 60.1
Nitab4.5_0000617g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 2.4e-74 283.1 282 60.6
QL02p046501 Quercus lobata HOM05D005029 ORTHO05D006052 2.4e-74 283.1 394 49.2
TAR626G1810 Trochodendron aralioides HOM05D005029 ORTHO05D006052 2.4e-74 283.1 290 59.7
Solyc07g008780.3 Solanum lycopersicum HOM05D005029 ORTHO05D006052 5.3e-74 282.0 294 58.2
PGSC0003DMG400028729 Solanum tuberosum HOM05D005029 ORTHO05D006052 3.4e-73 279.3 294 58.2
RcHm_v2.0_Chr4g0399711 Rosa chinensis HOM05D005029 ORTHO05D006052 5.9e-73 278.5 294 57.1
TAR383G0036 Trochodendron aralioides HOM05D005029 ORTHO05D006052 5.9e-73 278.5 291 60.5
Peaxi162Scf01600g00016 Petunia axillaris HOM05D005029 ORTHO05D006052 7.7e-73 278.1 289 57.8
Sed0026503 Sechium edule HOM05D005029 ORTHO05D006052 7.7e-73 278.1 300 58.3
Sopen07g004720 Solanum pennellii HOM05D005029 ORTHO05D006052 2.9e-72 276.2 278 60.1
TWI32G0396 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 5.0e-72 275.4 284 61.3
GSVIVG01010867001 Vitis vinifera HOM05D005029 ORTHO05D006052 5.0e-72 275.4 284 57.0
Actinidia01279 Actinidia chinensis HOM05D005029 ORTHO05D006052 6.5e-72 275.0 296 59.1
Nn7g36649 Nelumbo nucifera HOM05D005029 ORTHO05D006052 1.1e-71 274.2 286 60.1
CARHR237880 Cardamine hirsuta HOM05D005029 ORTHO05D006052 2.5e-71 273.1 282 59.6
FvH4_4g07340 Fragaria vesca HOM05D005029 ORTHO05D006052 2.5e-71 273.1 286 57.3
Ah.14g083530 Amaranthus hybridus HOM05D005029 ORTHO05D006052 3.2e-71 272.7 294 56.8
MSTRG.26542 Avicennia marina HOM05D005029 ORTHO05D006052 3.2e-71 272.7 286 58.0
arahy.Tifrunner.gnm1.ann1.J7B49U Arachis hypogaea HOM05D005029 ORTHO05D006052 4.2e-71 272.3 197 76.6
MELO3C017433.2 Cucumis melo HOM05D005029 ORTHO05D006052 5.5e-71 271.9 303 57.1
FAN12G1304 Fragaria x ananassa HOM05D005029 ORTHO05D006052 7.2e-71 271.6 286 57.0
CsaV3_1G031840 Cucumis sativus L. HOM05D005029 ORTHO05D006052 3.6e-70 269.2 261 62.8
FAN07G2409 Fragaria x ananassa HOM05D005029 ORTHO05D006052 5.1e-69 265.4 259 58.7
Nitab4.5_0008862g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 6.7e-69 265.0 293 57.3
AL7G22280 Arabidopsis lyrata HOM05D005029 ORTHO05D006052 3.3e-68 262.7 286 58.7
Carub.0007s1068 Capsella rubella HOM05D005029 ORTHO05D006052 4.4e-68 262.3 288 59.7
FAN17G0071 Fragaria x ananassa HOM05D005029 ORTHO05D006052 7.4e-68 261.5 299 54.2
Sc16g0010440 Simmondsia chinensis HOM05D005029 ORTHO05D006052 9.7e-68 261.2 274 56.9
THA.LOC104803957 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 2.2e-67 260.0 288 58.3
THA.LOC104803983 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 2.2e-67 260.0 288 58.3
Hund26310 Selenicereus undatus HOM05D005029 ORTHO05D006052 2.8e-67 259.6 296 56.1
Cc00_g10760 Coffea canephora HOM05D005029 ORTHO05D006052 3.7e-67 259.2 275 55.6
Eucgr.C00120 Eucalyptus grandis HOM05D005029 ORTHO05D006052 6.3e-67 258.5 288 58.0
Dinv25437 Davidia involucrata HOM05D005029 ORTHO05D006052 1.1e-66 257.7 278 60.1
Ah.09g230060 Amaranthus hybridus HOM05D005029 ORTHO05D006052 5.3e-66 255.4 304 53.9
FAN22G0020 Fragaria x ananassa HOM05D005029 ORTHO05D006052 5.3e-66 255.4 280 53.6
DCAR_030818 Daucus carota HOM05D005029 ORTHO05D006052 9.1e-66 254.6 264 58.3
AT4G29960 Arabidopsis thaliana HOM05D005029 ORTHO05D006052 1.2e-65 254.2 287 57.5
Thhalv10025919m.g Eutrema salsugineum HOM05D005029 ORTHO05D006052 5.9e-65 251.9 294 55.8
Sp7g27770 Schrenkiella parvula HOM05D005029 ORTHO05D006052 5.9e-65 251.9 289 57.4
Nn2g14879 Nelumbo nucifera HOM05D005029 ORTHO05D006052 1.0e-64 251.1 282 57.1
Atru.chr7.763 Acer truncatum HOM05D005029 ORTHO05D006052 1.3e-64 250.8 293 56.7
Atru.chr7.783 Acer truncatum HOM05D005029 ORTHO05D006052 1.3e-64 250.8 293 56.7
MBI19_g21652_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 1.7e-64 250.4 272 55.5
MBI13_g01742_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 3.8e-64 249.2 288 53.5
BolC3t21207H Brassica oleracea HOM05D005029 ORTHO05D006052 6.5e-64 248.4 273 56.8
Ciclev10009010m.g Citrus clementina HOM05D005029 ORTHO05D006052 1.4e-63 247.3 274 58.0
PSO063G5693 Papaver somniferum HOM05D005029 ORTHO05D006052 1.4e-63 247.3 282 59.9
THA.LOC104814654 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 1.4e-63 247.3 299 55.5
Aa31LG2G20590 Aethionema arabicum HOM05D005029 ORTHO05D006052 7.2e-63 245.0 285 54.4
PSO170G2568 Papaver somniferum HOM05D005029 ORTHO05D006052 1.2e-62 244.2 290 59.3
HanXRQChr13g0426591 Helianthus annuus HOM05D005029 ORTHO05D006052 2.1e-62 243.4 271 56.8
Oeu034799.1 Olea europaea HOM05D005029 ORTHO05D006052 2.7e-62 243.0 246 57.3
BcaC01g01206 Brassica carinata HOM05D005029 ORTHO05D006052 1.0e-61 241.1 276 55.8
Lsat_1_v5_gn_3_137280 Lactuca sativa HOM05D005029 ORTHO05D006052 1.0e-61 241.1 253 58.1
Aqoxy7G02787 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 1.8e-61 240.4 267 59.6
ClCG06G013560 Citrullus lanatus HOM05D005029 ORTHO05D006052 2.6e-60 236.5 275 54.5
SHI09006 Sapria himalayana HOM05D005029 ORTHO05D006052 7.4e-60 235.0 267 53.6
Migut.L01885 Erythranthe guttata HOM05D005029 ORTHO05D006052 4.5e-57 225.7 292 54.5
BraA08t33909Z Brassica rapa HOM05D005029 ORTHO05D006052 1.3e-56 224.2 293 53.2
SGA_v2.0_scaffold31G12759 Striga asiatica HOM05D005029 ORTHO05D006052 1.7e-56 223.8 293 52.6
PGR142G1735 Punica granatum HOM05D005029 ORTHO05D006052 1.5e-55 220.7 264 56.1
BcaNung00506 Brassica carinata HOM05D005029 ORTHO05D006052 2.5e-55 219.9 281 56.2
CSS0012939 Camellia sinensis var. sinensis HOM05D005029 ORTHO05D006052 5.5e-55 218.8 308 51.9
BraA01t00761Z Brassica rapa HOM05D005029 ORTHO05D006052 1.2e-54 217.6 285 52.6
BcaC07g37961 Brassica carinata HOM05D005029 ORTHO05D006052 2.1e-54 216.9 288 53.1
A08p19470 Brassica napus HOM05D005029 ORTHO05D006052 3.6e-54 216.1 291 51.9
BolC1t00902H Brassica oleracea HOM05D005029 ORTHO05D006052 4.4e-52 209.1 287 52.3
BcaC09g51764 Brassica carinata HOM05D005029 ORTHO05D006052 9.7e-52 208.0 258 54.3
BcaC09g51777 Brassica carinata HOM05D000106 ORTHO05D000160 1.3e-51 207.6 296 50.7
C01p09110 Brassica napus HOM05D005029 ORTHO05D006052 8.2e-51 204.9 245 55.5
A01p08140 Brassica napus HOM05D005029 ORTHO05D006052 4.1e-50 202.6 285 51.2
Oeu044675.2 Olea europaea HOM05D005029 ORTHO05D006052 9.1e-50 201.4 285 47.0
ECA240G3783 Erigeron canadensis HOM05D005029 ORTHO05D006052 1.0e-48 198.0 228 56.1
C03p88970 Brassica napus HOM05D005029 ORTHO05D006052 2.2e-48 196.8 256 51.6
CDE04G3679 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 3.8e-48 196.1 286 45.5
ATR0626G110 Amborella trichopoda HOM05D005029 ORTHO05D006052 3.2e-47 193.0 300 45.7
unitig_699.g19404 Utricularia gibba HOM05D005029 ORTHO05D006052 1.6e-46 190.7 290 44.8
unitig_27.g24759 Utricularia gibba HOM05D005029 ORTHO05D006052 6.1e-46 188.7 251 49.4
CDE02G0552 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 1.8e-45 187.2 289 43.9
HPP92_004703 Vanilla planifolia HOM05D005029 ORTHO05D006052 7.2e-39 165.2 235 48.9
Duzib168G1982 Durio zibethinus HOM05D005029 ORTHO05D006052 2.8e-38 163.3 151 66.2
SEGI_23735 Sequoiadendron giganteum HOM05D005029 ORTHO05D006052 8.0e-38 161.8 292 41.8
Rhsim01G0118000 Rhododendron simsii HOM05D005029 ORTHO05D006052 5.2e-37 159.1 226 44.7
Lj5A672T26 Lonicera japonica HOM05D005029 ORTHO05D006052 5.7e-36 155.6 162 57.4
C07p57380 Brassica napus HOM05D005029 ORTHO05D006052 2.8e-35 153.3 184 57.1
Zm00001eb071460 Zea mays HOM05D005029 ORTHO05D006052 2.4e-34 150.2 255 43.9
Os04g0606800 Oryza sativa ssp. japonica HOM05D005029 ORTHO05D006052 1.2e-33 147.9 237 45.1
Migut.J00802 Erythranthe guttata HOM05D005029 ORTHO05D006052 4.5e-33 146.0 286 40.6
Zm00001eb430500 Zea mays HOM05D005029 ORTHO05D006052 5.0e-32 142.5 255 42.7
Mapoly0076s0086 Marchantia polymorpha HOM05D005029 ORTHO05D006052 8.6e-32 141.7 285 37.5
AagrBONN_evm.TU.Sc2ySwM_368.2110 Anthoceros agrestis HOM05D005029 ORTHO05D006052 1.5e-31 141.0 314 36.6
Pp3c9_8340 Physcomitrium patens HOM05D005029 ORTHO05D006052 2.0e-28 130.6 295 35.6
SMO358G0278 Selaginella moellendorffii HOM05D005029 ORTHO05D006052 2.2e-27 127.1 245 39.6
BcaB06g28011 Brassica carinata HOM05D005029 ORTHO05D006052 2.8e-22 110.2 116 57.8
BcaC05g25672 Brassica carinata HOM05D005029 ORTHO05D006052 1.2e-20 104.8 215 40.5
A03p59350 Brassica napus HOM05D005029 ORTHO05D006052 9.8e-20 101.7 265 35.8
BolC6t39910H Brassica oleracea HOM05D005029 ORTHO05D006052 5.4e-18 95.9 175 38.3
BcaB04g18770 Brassica carinata HOM05D005029 ORTHO05D006052 1.9e-15 87.4 75 72.0
vmacro20818 Vaccinium macrocarpon HOM05D005029 ORTHO05D006052 4.0e-13 79.7 85 55.3
BcaB06g26390 Brassica carinata HOM05D005029 ORTHO05D006052 1.4e-10 71.2 109 45.0
CBR_g52634 Chara braunii HOM05D005029 ORTHO05D006052 1.3e-08 64.7 251 29.9
Aa31LG8G16260 Aethionema arabicum HOM05D005029 ORTHO05D006052 3.3e-07 60.1 89 42.7
Lj5C672T2 Lonicera japonica HOM05D005029 ORTHO05D006052 3.3e-07 60.1 57 56.1
BolC5t30251H Brassica oleracea HOM05D005029 ORTHO05D006052 8.1e-06 55.5 89 41.6


User provided reference genes

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