Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0074291 Lupinus albus HOM05D003881 ORTHO05D004343 0.0e+00 1994.5 1083 100.0
Glyma.09G068600 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1809.7 1088 91.4
Lj6g0005202 Lotus japonicus HOM05D003881 ORTHO05D004343 0.0e+00 1798.5 1085 91.0
Ca_26333_v3 Cicer arietinum L. HOM05D003881 ORTHO05D004343 0.0e+00 1790.4 1086 88.5
arahy.Tifrunner.gnm1.ann1.13CNWC Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1771.9 1084 88.6
arahy.Tifrunner.gnm1.ann1.3W29E4 Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1771.1 1100 87.5
Psat1g133400 Pisum sativum HOM05D003881 ORTHO05D004343 0.0e+00 1758.0 1085 86.6
Phvul.009G228100 Phaseolus vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1750.3 1082 86.2
Medtr2g041420 Medicago truncatula HOM05D003881 ORTHO05D004343 0.0e+00 1746.9 1086 85.9
Glyma.15G176400 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1732.6 1073 86.2
TPR.G28668 Trifolium pratense HOM05D003881 ORTHO05D004343 0.0e+00 1670.2 1049 84.7
Nn8g38678 Nelumbo nucifera HOM05D003881 ORTHO05D004343 0.0e+00 1598.6 1097 77.5
MELO3C015512.2 Cucumis melo HOM05D003881 ORTHO05D004343 0.0e+00 1597.0 1079 80.5
CsaV3_1G040850 Cucumis sativus L. HOM05D003881 ORTHO05D004343 0.0e+00 1596.6 1079 79.3
CiPaw.03G207700 Carya illinoinensis HOM05D003881 ORTHO05D004343 0.0e+00 1589.3 1112 77.2
TAR383G1047 Trochodendron aralioides HOM05D003881 ORTHO05D004343 0.0e+00 1585.9 1085 78.5
Prupe.7G201100 Prunus persica HOM05D003881 ORTHO05D004343 0.0e+00 1585.1 1094 77.4
CANSAT56G1084 Cannabis sativa HOM05D003881 ORTHO05D004343 0.0e+00 1584.7 1057 79.8
Ciclev10007295m.g Citrus clementina HOM05D003881 ORTHO05D004343 0.0e+00 1565.1 1096 79.7
CSS0040077 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 0.0e+00 1558.5 1096 74.9
Atru.chr7.1693 Acer truncatum HOM05D003881 ORTHO05D004343 0.0e+00 1555.0 1098 77.7
GSVIVG01015096001 Vitis vinifera HOM05D003881 ORTHO05D004343 0.0e+00 1553.5 1091 77.2
Sed0009854 Sechium edule HOM05D003881 ORTHO05D004343 0.0e+00 1550.8 1073 78.0
COL.COLO4_18111 Corchorus olitorius HOM05D003881 ORTHO05D004343 0.0e+00 1550.4 1096 77.8
ClCG03G015190 Citrullus lanatus HOM05D003881 ORTHO05D004343 0.0e+00 1548.9 1057 79.9
TWI34G0082 Tripterygium wilfordii HOM05D003881 ORTHO05D004343 0.0e+00 1545.0 1075 75.3
Eucgr.C00824 Eucalyptus grandis HOM05D003881 ORTHO05D004343 0.0e+00 1543.1 1094 76.4
FAN26G0375 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1535.4 1113 74.9
FAN19G1850 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1533.5 1097 75.4
Dinv42377 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1529.2 1095 75.0
Cfa003017 Carpinus fangiana HOM05D003881 ORTHO05D004343 0.0e+00 1527.7 1093 75.7
Rhsim03G0228800 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1526.5 1094 73.4
MBI19_g11836_MAGBIO Magnolia biondii HOM05D003881 ORTHO05D004343 0.0e+00 1526.1 1096 74.0
MD02G1088500 Malus domestica HOM05D003881 ORTHO05D004343 0.0e+00 1524.6 1095 75.2
CAN.G457.4 Capsicum annuum HOM05D003881 ORTHO05D004343 0.0e+00 1515.4 1078 74.2
FvH4_1g08430 Fragaria vesca HOM05D003881 ORTHO05D004343 0.0e+00 1515.4 1097 74.6
Potri.006G143300 Populus trichocarpa HOM05D003881 ORTHO05D004343 0.0e+00 1515.4 1092 74.5
FAN26G1433 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1514.2 1153 72.2
Thecc.09G079000 Theobroma cacao HOM05D003881 ORTHO05D004343 0.0e+00 1514.2 867 86.9
Dinv25567 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1511.5 1072 74.9
FAN28G2111 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1511.1 1108 73.7
Gohir.A07G014800 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1509.6 869 85.7
Gorai.001G015300 Gossypium raimondii HOM05D003881 ORTHO05D004343 0.0e+00 1509.6 869 85.8
Rhsim01G0044500 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1509.6 1116 71.8
Gohir.D07G014500 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1508.4 869 85.7
Haze_25994 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1505.0 1121 73.5
Sabra06G0112200 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1504.6 1084 74.9
Sabra06G0113500 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1504.6 1084 74.9
PGR142G3183 Punica granatum HOM05D003881 ORTHO05D004343 0.0e+00 1483.0 1067 75.5
HanXRQChr12g0354081 Helianthus annuus HOM05D003881 ORTHO05D004343 0.0e+00 1474.5 1085 72.7
Aqoxy5G02361 Aquilegia oxysepala HOM05D003881 ORTHO05D004343 0.0e+00 1473.4 1087 72.0
RcHm_v2.0_Chr2g0094531 Rosa chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1469.1 1101 72.8
QL11p000475 Quercus lobata HOM05D003881 ORTHO05D004343 0.0e+00 1468.8 1208 68.3
ECA232G2980 Erigeron canadensis HOM05D003881 ORTHO05D004343 0.0e+00 1466.4 1082 71.5
Manes.16G096500 Manihot esculenta HOM05D003881 ORTHO05D004343 0.0e+00 1462.6 1096 72.7
Haze_25986 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1461.4 1121 72.1
CDE06G1176 Ceratophyllum demersum HOM05D003881 ORTHO05D004343 0.0e+00 1455.3 1083 75.2
Lj7A685T51 Lonicera japonica HOM05D003881 ORTHO05D004343 0.0e+00 1454.9 937 77.9
Rhsim01G0044300 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1442.6 1096 70.6
THA.LOC104815327 Tarenaya hassleriana HOM05D003881 ORTHO05D004343 0.0e+00 1441.4 904 79.5
Lsat_1_v5_gn_5_141221 Lactuca sativa HOM05D003881 ORTHO05D004343 0.0e+00 1428.7 937 76.3
Duzib168G2095 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1427.5 869 82.4
PSO724G0120 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1424.5 1073 73.6
Sp3g24670 Schrenkiella parvula HOM05D003881 ORTHO05D004343 0.0e+00 1423.7 903 77.5
Carub.0003s2725 Capsella rubella HOM05D003881 ORTHO05D004343 0.0e+00 1422.9 892 78.8
AL3G43760 Arabidopsis lyrata HOM05D003881 ORTHO05D004343 0.0e+00 1421.8 1095 69.8
Actinidia29923 Actinidia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1420.2 1093 70.1
MSTRG.26461 Avicennia marina HOM05D003881 ORTHO05D004343 0.0e+00 1419.8 1102 70.2
PSO135G0960 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1419.4 1039 74.7
DCAR_031930 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1415.6 1088 69.8
BcaB08g34515 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1413.7 903 77.2
Nitab4.5_0000343g0070 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1409.8 1124 71.3
Hund26018 Selenicereus undatus HOM05D003881 ORTHO05D004343 0.0e+00 1408.7 1024 72.8
Aa31sc133G100 Aethionema arabicum HOM05D003881 ORTHO05D004343 0.0e+00 1406.3 926 76.3
Thhalv10002377m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 0.0e+00 1406.0 1071 69.4
Sc14g0000600 Simmondsia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1396.3 1087 70.5
C03p55630 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1389.8 904 76.4
BolC3t17840H Brassica oleracea HOM05D003881 ORTHO05D004343 0.0e+00 1389.8 904 76.4
A03p44780 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1388.6 904 76.3
BraA03t13613Z Brassica rapa HOM05D003881 ORTHO05D004343 0.0e+00 1388.6 904 76.3
Duzib150G0508 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1388.6 1096 73.6
BcaC01g03143 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1378.6 906 75.7
AUR62028984 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1378.2 1091 68.3
ATR0598G033 Amborella trichopoda HOM05D003881 ORTHO05D004343 0.0e+00 1370.9 1085 68.3
Migut.L01552 Erythranthe guttata HOM05D003881 ORTHO05D004343 0.0e+00 1360.5 1111 67.9
Cc06_g12030 Coffea canephora HOM05D003881 ORTHO05D004343 0.0e+00 1359.4 1103 67.8
Oeu018066.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1355.1 970 72.1
SEGI_24391 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 0.0e+00 1341.3 1049 68.8
SGA_v2.0_scaffold21G09481 Striga asiatica HOM05D003881 ORTHO05D004343 0.0e+00 1336.2 1101 67.4
Ah.14g084990 Amaranthus hybridus HOM05D003881 ORTHO05D004343 0.0e+00 1325.5 1081 66.5
Nitab4.5_0001488g0030 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1317.0 1034 69.4
EL10Ac8g19107 Beta vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1314.3 1192 61.0
vmacro06329 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 0.0e+00 1296.6 899 73.3
AUR62025189 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1290.4 894 72.9
DCAR_024741 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1286.2 1249 58.8
Oeu041279.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1261.1 1036 64.5
SalBow4G1287 Salvia bowleyana HOM05D003881 ORTHO05D004343 0.0e+00 1243.4 1088 64.4
Zm00001eb073540 Zea mays HOM05D003881 ORTHO05D004343 0.0e+00 1210.7 1066 60.8
Mapoly0010s0036 Marchantia polymorpha HOM05D003881 ORTHO05D004343 0.0e+00 1194.1 886 66.6
SMO143G0189 Selaginella moellendorffii HOM05D003881 ORTHO05D004343 0.0e+00 1176.4 890 65.6
AagrBONN_evm.TU.Sc2ySwM_344.1648 Anthoceros agrestis HOM05D003881 ORTHO05D004343 0.0e+00 1148.7 870 65.1
Solyc07g041510.3 Solanum lycopersicum HOM05D003881 ORTHO05D004343 0.0e+00 1103.2 692 79.2
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 0.0e+00 1103.2 690 79.3
unitig_8.g3529 Utricularia gibba HOM05D003881 ORTHO05D004343 1.2e-304 1050.0 1052 59.1
Pp3c3_17140 Physcomitrium patens HOM05D003881 ORTHO05D004343 4.9e-282 974.9 743 64.2
Cpa.g.sc28.63 Carica papaya HOM05D003881 ORTHO05D004343 2.1e-280 969.5 634 77.9
Peaxi162Scf00127g00019 Petunia axillaris HOM05D003881 ORTHO05D004343 1.7e-274 949.9 690 70.9
TAR383G0903 Trochodendron aralioides HOM05D003881 ORTHO05D004343 3.3e-270 935.6 546 83.5
CARHR103800 Cardamine hirsuta HOM05D003881 ORTHO05D004343 8.5e-250 867.8 574 74.7
HPP92_007226 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.6e-195 687.6 570 62.1
TAR383G0300 Trochodendron aralioides HOM05D003881 ORTHO05D004343 1.8e-175 620.9 518 74.1
Os07g0476200 Oryza sativa ssp. japonica HOM05D003881 ORTHO05D004343 5.7e-161 572.8 445 64.7
CARHR103810 Cardamine hirsuta HOM05D003881 ORTHO05D004343 2.5e-153 547.4 318 84.6
CBR_g74629 Chara braunii HOM05D003881 ORTHO05D004343 3.6e-123 447.2 368 59.2
SEGI_36108 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 8.8e-122 442.6 450 54.7
Sopen07g021070 Solanum pennellii HOM05D003881 ORTHO05D004343 2.4e-119 434.5 391 68.3
Peaxi162Scf00127g00018 Petunia axillaris HOM05D003881 ORTHO05D004343 2.4e-111 407.9 394 64.2
QL01p053501 Quercus lobata HOM05D003881 ORTHO05D004343 1.8e-98 365.2 233 78.1
Psat4g185720 Pisum sativum HOM05D003881 ORTHO05D004343 8.9e-98 362.8 248 77.4
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 3.2e-95 354.4 276 66.7
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 7.0e-95 353.2 230 76.1
SHI23794 Sapria himalayana HOM05D003881 ORTHO05D004343 1.5e-92 345.5 328 57.6
MCO14G023 Micromonas commoda HOM05D003881 ORTHO05D004343 1.4e-90 339.0 1041 27.6
Cre03.g189605 Chlamydomonas reinhardtii HOM05D003881 ORTHO05D004343 4.7e-83 313.9 1052 26.8
QL10p021459 Quercus lobata HOM05D000176 ORTHO05D000106 6.9e-66 256.9 176 71.6
Zm00001eb329800 Zea mays HOM05D003881 ORTHO05D004343 3.8e-64 251.1 190 65.8
ATR0684G009 Amborella trichopoda HOM05D003881 ORTHO05D004343 6.2e-59 233.8 388 38.9
SEGI_33062 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.1e-55 223.0 147 70.7
Thhalv10002929m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 6.0e-46 190.7 217 50.2
MD15G1215900 Malus domestica HOM05D003881 ORTHO05D004343 7.9e-46 190.3 243 51.0
CSS0024068 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 1.1e-44 186.4 99 88.9
ATR0193G014 Amborella trichopoda HOM05D003881 ORTHO05D004343 1.1e-42 179.9 107 83.2
HPP92_012481 Vanilla planifolia HOM05D003881 ORTHO05D004343 7.7e-41 173.7 149 61.1
CBR_g74627 Chara braunii HOM05D003881 ORTHO05D004343 1.1e-39 169.9 224 42.4
Lsat_1_v5_gn_3_15640 Lactuca sativa HOM05D003881 ORTHO05D004343 4.2e-39 167.9 103 73.8
ATR0193G031 Amborella trichopoda HOM05D003881 ORTHO05D004343 9.4e-39 166.8 108 74.1
Psat1g224080 Pisum sativum HOM05D003881 ORTHO05D004343 1.6e-38 166.0 89 91.0
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 2.0e-36 159.1 483 28.0
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 2.2e-35 155.6 218 47.2
Actinidia38472 Actinidia chinensis HOM05D003881 ORTHO05D004343 8.2e-35 153.7 236 40.3
Psat1g059560 Pisum sativum HOM05D003881 ORTHO05D004343 1.4e-34 152.9 218 46.8
SEGI_35060 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 6.9e-34 150.6 188 44.7
SEGI_29160 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 4.5e-33 147.9 119 58.0
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 8.5e-32 143.7 154 56.5
ATR0684G059 Amborella trichopoda HOM05D003881 ORTHO05D004343 8.8e-29 133.7 93 73.1
Hma1.2p1_0528F.1_g173040 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 2.6e-25 122.1 108 61.1
Hma1.2p1_0980F.1_g243635 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 2.6e-25 122.1 108 61.1
Hma1.2p1_1385F.1_g279633 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 2.6e-25 122.1 108 61.1
HPP92_006853 Vanilla planifolia HOM05D003881 ORTHO05D004343 2.7e-22 112.1 89 67.4
vmacro22673 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 1.8e-21 109.4 279 37.6
Psat6g098400 Pisum sativum HOM05D003881 ORTHO05D004343 1.1e-20 106.7 62 80.6
Hma1.2p1_0508F.1_g168780 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 2.0e-20 105.9 79 64.6
Rhsim03G0229000 Rhododendron simsii HOM05D003881 ORTHO05D004343 2.6e-20 105.5 97 64.9
Hma1.2p1_0430F.1_g151320 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 1.3e-19 103.2 61 80.3
HPP92_006870 Vanilla planifolia HOM05D003881 ORTHO05D004343 3.1e-18 98.6 87 63.2
SEGI_23032 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 9.1e-18 97.1 67 68.7
SEGI_11752 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 3.5e-17 95.1 134 43.3
SEGI_26438 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 3.5e-17 95.1 59 74.6
HPP92_028483 Vanilla planifolia HOM05D003881 ORTHO05D004343 2.2e-16 92.4 60 66.7
TPR.G10985 Trifolium pratense HOM05D003881 ORTHO05D004343 2.9e-16 92.0 47 97.9
SEGI_15507 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 6.5e-16 90.9 79 57.0
RcHm_v2.0_Chr5g0007121 Rosa chinensis HOM05D003881 ORTHO05D004343 8.5e-16 90.5 51 82.4
SEGI_39855 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 4.7e-14 84.7 80 55.0
PGSC0003DMG400019565 Solanum tuberosum HOM05D003881 ORTHO05D004343 9.7e-12 77.0 80 60.0
ATR0193G048 Amborella trichopoda HOM05D003881 ORTHO05D004343 1.3e-11 76.6 57 66.7
BolC7t41346H Brassica oleracea HOM05D003881 ORTHO05D004343 8.3e-11 73.9 77 53.2
C07p09280 Brassica napus HOM05D003881 ORTHO05D004343 7.0e-10 70.9 77 51.9
Glyma.18G270500 Glycine max HOM05D000415 ORTHO05D011841 5.0e-08 64.7 51 62.7
CBR_g74625 Chara braunii HOM05D003881 ORTHO05D004343 8.5e-08 63.9 66 48.5
A07p06220 Brassica napus HOM05D003881 ORTHO05D004343 1.9e-07 62.8 72 47.2
AUR62025190 Chenopodium quinoa HOM05D003881 ORTHO05D004343 1.6e-06 59.7 106 46.2


User provided reference genes

Program Settings