Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0074261 Lupinus albus HOM05D003803 ORTHO05D004456 1.3e-89 333.2 180 100.0
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 7.5e-34 147.9 196 47.4
Glyma.15G178100 Glycine max HOM05D003803 ORTHO05D004456 3.7e-33 145.6 211 48.8
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 1.3e-30 137.1 131 54.2
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 6.5e-30 134.8 134 53.0
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 8.6e-30 134.4 134 53.0
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 1.5e-29 133.7 109 60.6
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 4.2e-29 132.1 88 65.9
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 5.5e-29 131.7 110 59.1
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 5.5e-29 131.7 110 59.1
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 5.5e-29 131.7 123 56.9
TPR.G12599 Trifolium pratense HOM05D003803 ORTHO05D004456 5.5e-29 131.7 114 59.6
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.6e-28 130.2 128 54.7
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 1.6e-28 130.2 133 52.6
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 2.1e-28 129.8 123 55.3
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 2.1e-28 129.8 126 54.8
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 2.1e-28 129.8 102 62.7
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 2.8e-28 129.4 139 50.4
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 3.6e-28 129.0 124 58.1
Psat4g018440 Pisum sativum HOM05D003803 ORTHO05D004456 3.6e-28 129.0 85 68.2
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 6.1e-28 128.3 121 52.9
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 6.1e-28 128.3 118 56.8
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 8.0e-28 127.9 112 56.2
Glyma.13G110900 Glycine max HOM05D003803 ORTHO05D004456 1.0e-27 127.5 90 66.7
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 1.0e-27 127.5 136 54.4
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 1.4e-27 127.1 183 47.5
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 1.4e-27 127.1 109 56.9
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 1.8e-27 126.7 104 59.6
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 1.8e-27 126.7 129 51.9
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 1.8e-27 126.7 118 55.1
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 2.3e-27 126.3 137 48.9
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 4.0e-27 125.6 115 52.2
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 4.0e-27 125.6 124 54.0
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 4.0e-27 125.6 135 50.4
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 5.2e-27 125.2 117 53.0
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 1.5e-26 123.6 116 54.3
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 4.4e-26 122.1 105 57.1
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 9.8e-26 120.9 110 55.5
Lj6g0024210 Lotus japonicus HOM05D003803 ORTHO05D004456 1.7e-25 120.2 108 61.1
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 3.7e-25 119.0 108 53.7
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 4.9e-25 118.6 96 56.2
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 8.3e-25 117.9 185 41.1
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 1.1e-24 117.5 115 54.8
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 1.4e-24 117.1 129 52.7
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 1.8e-24 116.7 131 50.4
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 2.4e-24 116.3 115 56.5
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 7.0e-24 114.8 143 46.2
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 7.0e-24 114.8 143 46.2
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 9.2e-24 114.4 124 51.6
Oeu000278.1 Olea europaea HOM05D003803 ORTHO05D004456 2.0e-23 113.2 125 50.4
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 2.0e-23 113.2 89 58.4
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 2.7e-23 112.8 120 54.2
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 5.9e-23 111.7 126 50.8
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 5.9e-23 111.7 126 49.2
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 5.9e-23 111.7 101 57.4
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 7.8e-23 111.3 129 48.1
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 1.0e-22 110.9 126 45.2
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 1.7e-22 110.2 107 54.2
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 1.7e-22 110.2 89 65.2
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 1.7e-22 110.2 98 57.1
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 2.9e-22 109.4 124 50.8
Actinidia29937 Actinidia chinensis HOM05D003803 ORTHO05D004456 5.0e-22 108.6 109 51.4
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 5.0e-22 108.6 121 51.2
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 6.6e-22 108.2 129 49.6
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 8.6e-22 107.8 130 46.9
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 1.1e-21 107.5 110 50.9
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 1.5e-21 107.1 128 46.9
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 1.5e-21 107.1 128 46.9
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 1.9e-21 106.7 76 68.4
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 3.3e-21 105.9 111 51.4
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 4.3e-21 105.5 106 50.9
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 1.2e-20 104.0 111 51.4
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 1.2e-20 104.0 139 42.4
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 1.2e-20 104.0 152 44.1
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 2.8e-20 102.8 128 46.1
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 2.8e-20 102.8 120 47.5
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 2.8e-20 102.8 128 46.1
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 3.6e-20 102.4 90 56.7
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 4.7e-20 102.1 79 62.0
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 4.7e-20 102.1 89 58.4
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 4.7e-20 102.1 118 48.3
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 6.1e-20 101.7 115 46.1
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 6.1e-20 101.7 115 46.1
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 8.0e-20 101.3 94 53.2
C09p55600 Brassica napus HOM05D003803 ORTHO05D004456 1.0e-19 100.9 99 48.5
Gohir.D07G014900 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.4e-19 100.5 118 47.5
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.8e-19 100.1 101 52.5
PSO421G0234 Papaver somniferum HOM05D003803 ORTHO05D004456 2.3e-19 99.8 127 39.4
PSO104G0196 Papaver somniferum HOM05D003803 ORTHO05D004456 8.9e-19 97.8 107 45.8
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 8.9e-19 97.8 77 58.4
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 1.2e-18 97.4 92 50.0
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 1.5e-18 97.1 98 54.1
BolC9t58422H Brassica oleracea HOM05D003803 ORTHO05D004456 4.4e-18 95.5 120 43.3
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 4.4e-18 95.5 135 43.0
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 7.5e-18 94.7 84 56.0
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 3.7e-17 92.4 102 49.0
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 8.3e-17 91.3 84 56.0
Manes.11G018700 Manihot esculenta HOM05D003803 ORTHO05D004456 1.4e-16 90.5 160 37.5
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 1.8e-16 90.1 84 54.8
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 5.4e-16 88.6 61 67.2
DCAR_024755 Daucus carota HOM05D003803 ORTHO05D004456 1.2e-15 87.4 124 43.5
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 1.6e-15 87.0 63 61.9
RcHm_v2.0_Chr6g0246401 Rosa chinensis HOM05D003803 ORTHO05D004456 2.7e-15 86.3 83 55.4
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 7.8e-15 84.7 125 41.6
HanXRQChr10g0319741 Helianthus annuus HOM05D003803 ORTHO05D004456 2.3e-14 83.2 97 51.5
Sc15g0000470 Simmondsia chinensis HOM05D003803 ORTHO05D004456 3.9e-14 82.4 136 39.7
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 1.5e-13 80.5 61 62.3
BcaB08g36515 Brassica carinata HOM05D003803 ORTHO05D004456 4.3e-13 79.0 61 59.0
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 4.3e-13 79.0 69 55.1
HPP92_004363 Vanilla planifolia HOM05D003803 ORTHO05D004456 5.6e-13 78.6 76 47.4
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 2.1e-12 76.6 74 52.7
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 2.1e-12 76.6 61 57.4
ATR0598G175 Amborella trichopoda HOM05D003803 ORTHO05D004456 2.8e-12 76.3 73 50.7
Lsat_1_v5_gn_4_94241 Lactuca sativa HOM05D003803 ORTHO05D004456 2.8e-12 76.3 171 36.3
Medtr8g021170 Medicago truncatula HOM05D003803 ORTHO05D004456 4.7e-12 75.5 126 40.5
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 1.4e-11 73.9 83 49.4
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 1.4e-11 73.9 83 49.4
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 2.3e-11 73.2 74 52.7
ECA232G3825 Erigeron canadensis HOM05D003803 ORTHO05D004456 2.3e-11 73.2 146 35.6
Zm00001eb314160 Zea mays HOM05D003803 ORTHO05D004456 4.0e-11 72.4 117 36.8
Ca_02184_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 6.8e-11 71.6 68 63.2
Lalb_Chr04g0263591 Lupinus albus HOM05D003803 ORTHO05D004456 6.8e-11 71.6 127 40.9
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.5e-10 70.5 51 68.6
QL05p003994 Quercus lobata HOM05D003803 ORTHO05D004456 2.6e-10 69.7 71 45.1
CDE05G2490 Ceratophyllum demersum HOM05D003803 ORTHO05D004456 3.4e-10 69.3 160 38.8
HanXRQChr09g0276811 Helianthus annuus HOM05D003803 ORTHO05D004456 5.8e-10 68.6 74 51.4
Zm00001eb100230 Zea mays HOM05D003803 ORTHO05D004456 5.8e-10 68.6 99 38.4
MBI13_g43925_MAGBIO Magnolia biondii HOM05D003803 ORTHO05D004456 7.5e-10 68.2 50 58.0
ClCG11G001400 Citrullus lanatus HOM05D003803 ORTHO05D004456 9.8e-10 67.8 107 39.3
Os08g0456600 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 9.8e-10 67.8 76 36.8
HPP92_016238 Vanilla planifolia HOM05D003803 ORTHO05D004456 1.7e-09 67.0 87 41.4
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 2.2e-09 66.6 100 41.0
Glyma.07G040200 Glycine max HOM05D003803 ORTHO05D004456 6.4e-09 65.1 112 40.2
Atru.chr1.4007 Acer truncatum HOM05D003803 ORTHO05D004456 8.3e-09 64.7 54 57.4
HanXRQChr12g0354391 Helianthus annuus HOM05D003803 ORTHO05D004456 1.4e-08 63.9 104 42.3
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 1.9e-08 63.5 121 41.3
Psat4g168440 Pisum sativum HOM05D003803 ORTHO05D004456 1.9e-08 63.5 72 48.6
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 4.1e-08 62.4 47 66.0
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 1.2e-07 60.8 57 59.6
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 1.6e-07 60.5 80 45.0
RcHm_v2.0_Chr6g0246681 Rosa chinensis HOM05D003803 ORTHO05D004456 1.6e-07 60.5 58 53.4
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 2.0e-07 60.1 51 60.8
SEGI_33452 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 2.0e-07 60.1 97 37.1
SGA_v2.0_scaffold609G53181 Striga asiatica HOM05D003803 ORTHO05D004456 2.0e-07 60.1 70 47.1
TPR.G16739 Trifolium pratense HOM05D003803 ORTHO05D004456 6.0e-07 58.5 66 48.5
SEGI_34897 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 1.3e-06 57.4 83 38.6
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 1.7e-06 57.0 61 50.8
COL.COLO4_30738 Corchorus olitorius HOM05D003803 ORTHO05D004456 3.9e-06 55.8 56 50.0
Thecc.06G122400 Theobroma cacao HOM05D003803 ORTHO05D004456 3.9e-06 55.8 161 31.7


User provided reference genes

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