Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0074141 Lupinus albus HOM05D006514 ORTHO05D008138 2.8e-28 127.9 62 100.0
Lalb_Chr08g0232711 Lupinus albus HOM05D006514 ORTHO05D008138 4.7e-20 100.5 62 82.3
arahy.Tifrunner.gnm1.ann1.0361F1 Arachis hypogaea HOM05D006514 ORTHO05D008138 1.5e-18 95.5 59 72.9
arahy.Tifrunner.gnm1.ann1.TUTF01 Arachis hypogaea HOM05D006514 ORTHO05D008138 2.6e-18 94.7 58 74.1
arahy.Tifrunner.gnm1.ann1.40255N Arachis hypogaea HOM05D006514 ORTHO05D008138 4.4e-18 94.0 57 73.7
Lalb_Chr13g0293771 Lupinus albus HOM05D006514 ORTHO05D008138 9.8e-18 92.8 54 75.9
Lj4g0001345 Lotus japonicus HOM05D006514 ORTHO05D008138 1.7e-17 92.0 52 80.8
arahy.Tifrunner.gnm1.ann1.4217G9 Arachis hypogaea HOM05D006514 ORTHO05D008138 6.4e-17 90.1 52 76.9
Glyma.05G140300 Glycine max HOM05D006514 ORTHO05D008138 2.4e-16 88.2 53 79.2
RcHm_v2.0_Chr5g0070251 Rosa chinensis HOM05D006514 ORTHO05D008138 2.4e-16 88.2 59 72.9
Glyma.08G095700 Glycine max HOM05D006514 ORTHO05D008138 3.2e-16 87.8 53 77.4
Dinv36061 Davidia involucrata HOM05D006514 ORTHO05D008138 5.4e-16 87.0 58 74.1
FAN16G2060 Fragaria x ananassa HOM05D006514 ORTHO05D008138 5.4e-16 87.0 55 76.4
Gohir.A03G078101 Gossypium hirsutum HOM05D006514 ORTHO05D008138 7.0e-16 86.7 64 67.2
QL12p026537 Quercus lobata HOM05D006514 ORTHO05D008138 9.2e-16 86.3 56 76.8
QL12p026562 Quercus lobata HOM05D006514 ORTHO05D008138 9.2e-16 86.3 56 76.8
RcHm_v2.0_Chr7g0176991 Rosa chinensis HOM05D006514 ORTHO05D008138 9.2e-16 86.3 57 73.7
Gohir.D02G094200 Gossypium hirsutum HOM05D006514 ORTHO05D008138 1.6e-15 85.5 64 65.6
Gorai.005G107100 Gossypium raimondii HOM05D006514 ORTHO05D008138 1.6e-15 85.5 64 65.6
CARHR006120 Cardamine hirsuta HOM05D006514 ORTHO05D008138 2.0e-15 85.1 53 79.2
AT1G06515 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 2.7e-15 84.7 55 74.5
AL1G16530 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 4.6e-15 84.0 55 72.7
A10p05150 Brassica napus HOM05D006514 ORTHO05D008138 4.6e-15 84.0 54 75.9
BraA10t42782Z Brassica rapa HOM05D006514 ORTHO05D008138 4.6e-15 84.0 54 75.9
Carub.0001s0587 Capsella rubella HOM05D006514 ORTHO05D008138 4.6e-15 84.0 55 72.7
Thhalv10009956m.g Eutrema salsugineum HOM05D006514 ORTHO05D008138 4.6e-15 84.0 55 74.5
FAN21G1628 Fragaria x ananassa HOM05D006514 ORTHO05D008138 4.6e-15 84.0 55 74.5
Phvul.002G183600 Phaseolus vulgaris HOM05D006514 ORTHO05D008138 4.6e-15 84.0 51 80.4
C04p60100 Brassica napus HOM05D006514 ORTHO05D008138 7.8e-15 83.2 54 72.2
MSTRG.24295 Avicennia marina HOM05D006514 ORTHO05D008138 1.0e-14 82.8 61 65.6
BcaB02g06800 Brassica carinata HOM05D006514 ORTHO05D008138 1.0e-14 82.8 53 77.4
BcaC07g42061 Brassica carinata HOM05D006514 ORTHO05D008138 1.0e-14 82.8 53 77.4
A09p66940 Brassica napus HOM05D006514 ORTHO05D008138 1.0e-14 82.8 53 77.4
C05p04760 Brassica napus HOM05D006514 ORTHO05D008138 1.0e-14 82.8 53 77.4
C08p51170 Brassica napus HOM05D006514 ORTHO05D008138 1.0e-14 82.8 53 77.4
BolC5t29247H Brassica oleracea HOM05D006514 ORTHO05D008138 1.0e-14 82.8 53 77.4
BolC8t52644H Brassica oleracea HOM05D006514 ORTHO05D008138 1.0e-14 82.8 53 77.4
BraA09t42029Z Brassica rapa HOM05D006514 ORTHO05D008138 1.0e-14 82.8 53 77.4
Duzib093G1568 Durio zibethinus HOM05D000207 ORTHO05D001482 1.0e-14 82.8 56 71.4
Migut.N00499 Erythranthe guttata HOM05D006514 ORTHO05D008138 1.0e-14 82.8 55 74.5
AL4G25910 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 1.3e-14 82.4 53 75.5
A04p23650 Brassica napus HOM05D006514 ORTHO05D008138 1.3e-14 82.4 54 72.2
Duzib116G0168 Durio zibethinus HOM05D006514 ORTHO05D008138 1.3e-14 82.4 55 74.5
FvH4_3g38980 Fragaria vesca HOM05D006514 ORTHO05D008138 1.3e-14 82.4 54 74.1
PGR004G0716 Punica granatum HOM05D006514 ORTHO05D008138 1.3e-14 82.4 57 70.2
AT2G30942 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 1.7e-14 82.0 55 70.9
BcaB06g28396 Brassica carinata HOM05D006514 ORTHO05D008138 1.7e-14 82.0 53 73.6
BcaB06g28465 Brassica carinata HOM05D006514 ORTHO05D008138 1.7e-14 82.0 53 73.6
BolC4t27513H Brassica oleracea HOM05D006514 ORTHO05D008138 1.7e-14 82.0 53 73.6
Carub.0004s1216 Capsella rubella HOM05D006514 ORTHO05D008138 1.7e-14 82.0 55 70.9
CiPaw.13G075100 Carya illinoinensis HOM05D006514 ORTHO05D008138 1.7e-14 82.0 57 71.9
MD11G1070700 Malus domestica HOM05D006514 ORTHO05D008138 1.7e-14 82.0 61 70.5
Prupe.6G054600 Prunus persica HOM05D006514 ORTHO05D008138 2.3e-14 81.6 53 75.5
THA.LOC104800827 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 2.3e-14 81.6 55 72.7
TWI12G0206 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 2.3e-14 81.6 58 67.2
BraA04t17890Z Brassica rapa HOM05D006514 ORTHO05D008138 3.0e-14 81.3 53 73.6
Manes.05G162000 Manihot esculenta HOM05D006514 ORTHO05D008138 3.0e-14 81.3 57 70.2
GSVIVG01037960001 Vitis vinifera HOM05D006514 ORTHO05D008138 3.9e-14 80.9 56 69.6
Duzib041G0253 Durio zibethinus HOM05D006514 ORTHO05D008138 5.0e-14 80.5 53 73.6
Hma1.2p1_0203F.1_g086530 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 5.0e-14 80.5 54 74.1
CiPaw.07G206900 Carya illinoinensis HOM05D006514 ORTHO05D008138 6.6e-14 80.1 54 70.4
Hma1.2p1_0023F.1_g014910 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 6.6e-14 80.1 54 74.1
CAN.G358.121 Capsicum annuum HOM05D006514 ORTHO05D008138 1.5e-13 79.0 56 66.1
THA.LOC104815841 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 1.5e-13 79.0 53 71.7
Thecc.08G024100 Theobroma cacao HOM05D006514 ORTHO05D008138 1.5e-13 79.0 55 70.9
CsaV3_5G038690 Cucumis sativus L. HOM05D006514 ORTHO05D008138 1.9e-13 78.6 56 66.1
Ca_07248_v3 Cicer arietinum L. HOM05D006514 ORTHO05D008138 2.5e-13 78.2 49 75.5
Cc10_g03090 Coffea canephora HOM05D006514 ORTHO05D008138 2.5e-13 78.2 53 67.9
MD03G1065900 Malus domestica HOM05D006514 ORTHO05D008138 2.5e-13 78.2 61 68.9
Potri.002G263300 Populus trichocarpa HOM05D006514 ORTHO05D008138 2.5e-13 78.2 57 68.4
Oeu009866.1 Olea europaea HOM05D006514 ORTHO05D008138 3.3e-13 77.8 53 67.9
unitig_85.g27236 Utricularia gibba HOM05D006514 ORTHO05D008138 3.3e-13 77.8 53 71.7
Cc07_g09230 Coffea canephora HOM05D006514 ORTHO05D008138 4.3e-13 77.4 53 73.6
Oeu025460.1 Olea europaea HOM05D006514 ORTHO05D008138 5.6e-13 77.0 53 67.9
Ciclev10023245m.g Citrus clementina HOM05D006514 ORTHO05D008138 7.3e-13 76.6 55 63.6
SalBow8G0801 Salvia bowleyana HOM05D006514 ORTHO05D008138 7.3e-13 76.6 53 71.7
Nn1g05070 Nelumbo nucifera HOM05D006514 ORTHO05D008138 9.5e-13 76.3 54 68.5
Potri.002G263100 Populus trichocarpa HOM05D006514 ORTHO05D008138 9.5e-13 76.3 55 67.3
Sed0005431 Sechium edule HOM05D006514 ORTHO05D008138 9.5e-13 76.3 56 66.1
PSO017G0544 Papaver somniferum HOM05D006514 ORTHO05D008138 1.2e-12 75.9 54 70.4
SHI24607 Sapria himalayana HOM05D006514 ORTHO05D008138 1.2e-12 75.9 54 66.7
PGSC0003DMG400015499 Solanum tuberosum HOM05D006514 ORTHO05D008138 1.2e-12 75.9 56 67.9
TWI36G0631 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 2.1e-12 75.1 53 69.8
CSS0043768 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 2.8e-12 74.7 57 70.2
Eucgr.F04183 Eucalyptus grandis HOM05D006514 ORTHO05D008138 2.8e-12 74.7 52 71.2
CARHR124460 Cardamine hirsuta HOM05D006514 ORTHO05D008138 4.7e-12 73.9 56 64.3
Potri.001G000400 Populus trichocarpa HOM05D006514 ORTHO05D008138 4.7e-12 73.9 55 67.3
Migut.H00182 Erythranthe guttata HOM05D006514 ORTHO05D008138 6.2e-12 73.6 55 65.5
PSO339G3417 Papaver somniferum HOM05D006514 ORTHO05D008138 6.2e-12 73.6 58 60.3
DCAR_025932 Daucus carota HOM05D006514 ORTHO05D008138 1.4e-11 72.4 49 69.4
FAN11G3963 Fragaria x ananassa HOM05D006514 ORTHO05D008138 2.3e-11 71.6 56 66.1
CANSAT01G0756 Cannabis sativa HOM05D006514 ORTHO05D008138 3.1e-11 71.2 40 77.5
Rhsim08G0113100 Rhododendron simsii HOM05D006514 ORTHO05D008138 4.0e-11 70.9 39 82.1
Gohir.A01G116600 Gossypium hirsutum HOM05D006514 ORTHO05D008138 5.2e-11 70.5 52 69.2
Gohir.D01G105000 Gossypium hirsutum HOM05D006514 ORTHO05D008138 5.2e-11 70.5 52 69.2
Gorai.002G129000 Gossypium raimondii HOM05D006514 ORTHO05D008138 5.2e-11 70.5 52 69.2
PSO801G0156 Papaver somniferum HOM05D006514 ORTHO05D008138 5.2e-11 70.5 39 76.9
Os04g0518650 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 6.8e-11 70.1 57 54.4
vmacro17857 Vaccinium macrocarpon HOM05D006514 ORTHO05D008138 1.5e-10 68.9 55 65.5
TAR628G0909 Trochodendron aralioides HOM05D006514 ORTHO05D008138 7.5e-10 66.6 52 67.3
Zm00001eb368290 Zea mays HOM05D006514 ORTHO05D008138 2.2e-09 65.1 41 68.3
Zm00001eb096700 Zea mays HOM05D007724 ORTHO05D009363 3.7e-09 64.3 41 61.0
FAN25G0650 Fragaria x ananassa HOM05D006514 ORTHO05D008138 4.9e-09 63.9 33 84.8
Os07g0446900 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 4.9e-09 63.9 43 69.8
CDE04G3777 Ceratophyllum demersum HOM05D006514 ORTHO05D008138 8.3e-09 63.2 39 74.4
FAN16G1919 Fragaria x ananassa HOM05D006514 ORTHO05D008138 1.4e-08 62.4 53 62.3
SEGI_00006 Sequoiadendron giganteum HOM05D006514 ORTHO05D008138 1.9e-08 62.0 53 58.5
FAN11G3335 Fragaria x ananassa HOM05D006514 ORTHO05D008138 5.4e-08 60.5 31 87.1
Lsat_1_v5_gn_1_26540 Lactuca sativa HOM05D006514 ORTHO05D008138 5.4e-08 60.5 35 74.3
Aa31LG1G7590 Aethionema arabicum HOM05D006514 ORTHO05D008138 1.2e-07 59.3 87 43.7
ATR0733G176 Amborella trichopoda HOM05D006514 ORTHO05D008138 1.2e-07 59.3 39 69.2
CSS0047171 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 1.6e-07 58.9 34 76.5
Os07g0446600 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 4.6e-07 57.4 34 76.5
C04p41290 Brassica napus HOM05D006514 ORTHO05D008138 6.0e-07 57.0 31 77.4
Ah.06g182360 Amaranthus hybridus HOM05D006514 ORTHO05D008138 2.3e-06 55.1 31 77.4
Medtr7g024350 Medicago truncatula HOM05D006514 ORTHO05D008138 5.1e-06 53.9 49 55.1
AagrBONN_evm.TU.Sc2ySwM_228.3660 Anthoceros agrestis HOM05D006514 ORTHO05D008138 6.6e-06 53.5 50 52.0


User provided reference genes

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