Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0074031 Lupinus albus HOM05D007531 ORTHO05D009484 2.4e-48 195.3 104 100.0
Psat0s2373g0160 Pisum sativum HOM05D007531 ORTHO05D009484 1.5e-18 96.3 91 59.3
Medtr4g124770 Medicago truncatula HOM05D007531 ORTHO05D009484 4.1e-16 88.2 62 67.7
COL.COLO4_21218 Corchorus olitorius HOM05D007531 ORTHO05D009484 9.0e-16 87.0 108 50.9
Manes.03G043400 Manihot esculenta HOM05D007531 ORTHO05D009484 4.5e-15 84.7 104 46.2
TPR.G12718 Trifolium pratense HOM05D007531 ORTHO05D009484 5.9e-15 84.3 69 60.9
PGR042G0735 Punica granatum HOM05D007531 ORTHO05D009484 1.3e-14 83.2 106 46.2
Lj4g0024105 Lotus japonicus HOM05D007531 ORTHO05D009484 1.7e-14 82.8 85 51.8
Prupe.7G193100 Prunus persica HOM05D007531 ORTHO05D009484 1.1e-13 80.1 107 45.8
Phvul.004G046500 Phaseolus vulgaris HOM05D007531 ORTHO05D009484 1.4e-13 79.7 56 62.5
CANSAT56G3767 Cannabis sativa HOM05D007531 ORTHO05D009484 3.2e-13 78.6 104 47.1
MD15G1222700 Malus domestica HOM05D007531 ORTHO05D009484 5.5e-13 77.8 104 43.3
Phvul.003G128000 Phaseolus vulgaris HOM05D007531 ORTHO05D009484 9.4e-13 77.0 52 65.4
Duzib168G1872 Durio zibethinus HOM05D007531 ORTHO05D009484 2.7e-12 75.5 95 48.4
Thecc.09G071300 Theobroma cacao HOM05D007531 ORTHO05D009484 2.7e-12 75.5 104 45.2
arahy.Tifrunner.gnm1.ann1.ETL5CI Arachis hypogaea HOM05D007531 ORTHO05D009484 3.6e-12 75.1 57 57.9
arahy.Tifrunner.gnm1.ann1.J82KAY Arachis hypogaea HOM05D007531 ORTHO05D009484 4.6e-12 74.7 63 54.0
Potri.006G137401 Populus trichocarpa HOM05D007531 ORTHO05D009484 7.9e-12 73.9 90 44.4
QL11p002692 Quercus lobata HOM05D007531 ORTHO05D009484 7.9e-12 73.9 103 43.7
SGA_v2.0_scaffold296G47570 Striga asiatica HOM05D007531 ORTHO05D009484 7.9e-12 73.9 94 43.6
Cpa.g.sc82.75 Carica papaya HOM05D007531 ORTHO05D009484 1.4e-11 73.2 105 44.8
Cfa002948 Carpinus fangiana HOM05D007531 ORTHO05D009484 1.4e-11 73.2 107 44.9
GSVIVG01015026001 Vitis vinifera HOM05D007531 ORTHO05D009484 3.9e-11 71.6 104 44.2
Sp1g17150 Schrenkiella parvula HOM05D007531 ORTHO05D009484 5.1e-11 71.2 104 46.2
CSS0023587 Camellia sinensis var. sinensis HOM05D007531 ORTHO05D009484 6.7e-11 70.9 81 48.1
Dinv42427 Davidia involucrata HOM05D007531 ORTHO05D009484 6.7e-11 70.9 104 43.3
Thhalv10009175m.g Eutrema salsugineum HOM05D007531 ORTHO05D009484 6.7e-11 70.9 53 60.4
Carub.0001s1884 Capsella rubella HOM05D007531 ORTHO05D009484 8.8e-11 70.5 105 44.8
Sc14g0000480 Simmondsia chinensis HOM05D007531 ORTHO05D009484 8.8e-11 70.5 73 50.7
AL1G31820 Arabidopsis lyrata HOM05D007531 ORTHO05D009484 1.5e-10 69.7 105 44.8
ClCG11G000070 Citrullus lanatus HOM05D007531 ORTHO05D009484 1.5e-10 69.7 89 47.2
Glyma.17G046400 Glycine max HOM05D007531 ORTHO05D009484 1.5e-10 69.7 48 64.6
TWI63G1700 Tripterygium wilfordii HOM05D007531 ORTHO05D009484 1.5e-10 69.7 89 46.1
Aa31LG7G3950 Aethionema arabicum HOM05D007531 ORTHO05D009484 2.0e-10 69.3 104 43.3
Glyma.13G113300 Glycine max HOM05D007531 ORTHO05D009484 2.0e-10 69.3 49 61.2
Duzib150G1567 Durio zibethinus HOM05D007531 ORTHO05D009484 2.5e-10 68.9 104 41.3
Sabra06G0107500 Salix brachista HOM05D007531 ORTHO05D009484 2.5e-10 68.9 57 50.9
VMungo1215G2546 Vigna mungo HOM05D007531 ORTHO05D009484 2.5e-10 68.9 41 68.3
AT1G19240 Arabidopsis thaliana HOM05D007531 ORTHO05D009484 4.3e-10 68.2 66 51.5
BcaB07g31940 Brassica carinata HOM05D007531 ORTHO05D009484 4.3e-10 68.2 104 44.2
BcaC07g38992 Brassica carinata HOM05D007531 ORTHO05D009484 4.3e-10 68.2 104 44.2
Eucgr.H05011 Eucalyptus grandis HOM05D007531 ORTHO05D009484 4.3e-10 68.2 101 42.6
CsaV3_5G027570 Cucumis sativus L. HOM05D007531 ORTHO05D009484 5.7e-10 67.8 85 47.1
THA.LOC104809045 Tarenaya hassleriana HOM05D007531 ORTHO05D009484 5.7e-10 67.8 104 44.2
FvH4_1g09260 Fragaria vesca HOM05D007531 ORTHO05D009484 7.4e-10 67.4 72 45.8
FAN19G1112 Fragaria x ananassa HOM05D007531 ORTHO05D009484 7.4e-10 67.4 72 45.8
Manes.16G092000 Manihot esculenta HOM05D007531 ORTHO05D009484 7.4e-10 67.4 86 43.0
FAN23G0531 Fragaria x ananassa HOM05D007531 ORTHO05D009484 9.7e-10 67.0 72 45.8
FAN26G1659 Fragaria x ananassa HOM05D007531 ORTHO05D009484 9.7e-10 67.0 104 35.6
FAN26G1806 Fragaria x ananassa HOM05D007531 ORTHO05D009484 9.7e-10 67.0 104 35.6
Oeu028116.1 Olea europaea HOM05D007531 ORTHO05D009484 9.7e-10 67.0 90 46.7
Gohir.D08G267900 Gossypium hirsutum HOM05D007531 ORTHO05D009484 1.3e-09 66.6 97 43.3
Gorai.004G285500 Gossypium raimondii HOM05D007531 ORTHO05D009484 1.3e-09 66.6 97 43.3
Atru.chr7.1757 Acer truncatum HOM05D007531 ORTHO05D009484 1.7e-09 66.2 93 43.0
Rhsim05G0002900 Rhododendron simsii HOM05D007531 ORTHO05D009484 1.7e-09 66.2 58 53.4
EL10Ac8g18992 Beta vulgaris HOM05D007531 ORTHO05D009484 2.2e-09 65.9 107 38.3
C05p17640 Brassica napus HOM05D007531 ORTHO05D009484 2.2e-09 65.9 61 54.1
BolC5t30467H Brassica oleracea HOM05D007531 ORTHO05D009484 2.2e-09 65.9 61 54.1
RcHm_v2.0_Chr2g0095821 Rosa chinensis HOM05D007531 ORTHO05D009484 2.8e-09 65.5 104 36.5
SalBow6G4078 Salvia bowleyana HOM05D007531 ORTHO05D009484 2.8e-09 65.5 91 48.4
Aqoxy7G04136 Aquilegia oxysepala HOM05D007531 ORTHO05D009484 3.7e-09 65.1 71 50.7
DCAR_010491 Daucus carota HOM05D007531 ORTHO05D009484 3.7e-09 65.1 55 52.7
Gohir.A08G246700 Gossypium hirsutum HOM05D007531 ORTHO05D009484 3.7e-09 65.1 97 43.3
Hma1.2p1_0519F.1_g171380 Hydrangea macrophylla HOM05D007531 ORTHO05D009484 3.7e-09 65.1 55 56.4
Nitab4.5_0001092g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 3.7e-09 65.1 99 42.4
A06p15390 Brassica napus HOM05D007531 ORTHO05D009484 4.8e-09 64.7 61 52.5
BraA06t24652Z Brassica rapa HOM05D007531 ORTHO05D009484 4.8e-09 64.7 61 52.5
Migut.L01591 Erythranthe guttata HOM05D007531 ORTHO05D009484 6.3e-09 64.3 86 44.2
Nitab4.5_0007540g0040 Nicotiana tabacum HOM05D007531 ORTHO05D009484 6.3e-09 64.3 84 47.6
TAR626G0337 Trochodendron aralioides HOM05D007531 ORTHO05D009484 6.3e-09 64.3 59 52.5
MSTRG.19432 Avicennia marina HOM05D007531 ORTHO05D009484 1.1e-08 63.5 87 46.0
Solyc07g042450.3 Solanum lycopersicum HOM05D007531 ORTHO05D009484 1.4e-08 63.2 91 41.8
Sopen07g022090 Solanum pennellii HOM05D007531 ORTHO05D009484 1.4e-08 63.2 91 41.8
Lsat_1_v5_gn_7_35440 Lactuca sativa HOM05D007531 ORTHO05D009484 1.8e-08 62.8 104 38.5
Ciclev10010006m.g Citrus clementina HOM05D007531 ORTHO05D009484 2.4e-08 62.4 104 36.5
ECA246G1013 Erigeron canadensis HOM05D007531 ORTHO05D009484 2.4e-08 62.4 82 39.0
Nitab4.5_0001699g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 2.4e-08 62.4 101 39.6
CAN.G660.22 Capsicum annuum HOM05D007531 ORTHO05D009484 3.1e-08 62.0 102 37.3
vmacro17085 Vaccinium macrocarpon HOM05D007531 ORTHO05D009484 3.1e-08 62.0 70 48.6
HPP92_021129 Vanilla planifolia HOM05D007531 ORTHO05D009484 5.3e-08 61.2 47 55.3
HPP92_021130 Vanilla planifolia HOM05D007531 ORTHO05D009484 5.3e-08 61.2 47 55.3
Actinidia39623 Actinidia chinensis HOM05D007531 ORTHO05D009484 9.1e-08 60.5 62 46.8
CDE06G0851 Ceratophyllum demersum HOM05D007531 ORTHO05D009484 9.1e-08 60.5 52 55.8
Cc06_g12620 Coffea canephora HOM05D007531 ORTHO05D009484 9.1e-08 60.5 107 35.5
PGSC0003DMG400013576 Solanum tuberosum HOM05D007531 ORTHO05D009484 9.1e-08 60.5 102 40.2
CARHR019840 Cardamine hirsuta HOM05D007531 ORTHO05D009484 3.4e-07 58.5 111 36.9
Dinv25515 Davidia involucrata HOM05D007531 ORTHO05D009484 1.3e-06 56.6 86 41.9
MBI19_g38003_MAGBIO Magnolia biondii HOM05D007531 ORTHO05D009484 1.3e-06 56.6 80 38.8
Peaxi162Scf00191g01018 Petunia axillaris HOM05D007531 ORTHO05D009484 2.2e-06 55.8 94 42.6
unitig_578.g16405 Utricularia gibba HOM05D007531 ORTHO05D009484 2.2e-06 55.8 107 36.4


User provided reference genes

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