Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0073091 Lupinus albus HOM05D004469 ORTHO05D005429 2.1e-308 1061.6 566 100.0
arahy.Tifrunner.gnm1.ann1.2E9WSC Arachis hypogaea HOM05D004469 ORTHO05D005429 4.6e-223 778.1 574 73.7
arahy.Tifrunner.gnm1.ann1.K75BJP Arachis hypogaea HOM05D004469 ORTHO05D005429 1.8e-222 776.2 575 73.9
Lj6g0024161 Lotus japonicus HOM05D004469 ORTHO05D005429 2.3e-222 775.8 572 74.0
Glyma.15G198300 Glycine max HOM05D004469 ORTHO05D005429 9.7e-221 770.4 572 73.1
Phvul.009G212100 Phaseolus vulgaris HOM05D004469 ORTHO05D005429 3.7e-220 768.5 570 73.0
Glyma.09G091700 Glycine max HOM05D004469 ORTHO05D005429 2.0e-218 762.7 573 72.8
Medtr2g450730 Medicago truncatula HOM05D004469 ORTHO05D005429 1.8e-214 749.6 567 72.1
Ca_03095_v3 Cicer arietinum L. HOM05D004469 ORTHO05D005429 4.8e-212 741.5 573 71.7
VMungo1309G2337 Vigna mungo HOM05D004469 ORTHO05D005429 1.2e-210 736.9 571 70.9
Psat1g021280 Pisum sativum HOM05D004469 ORTHO05D005429 2.7e-207 725.7 567 69.1
QL02p090812 Quercus lobata HOM05D004469 ORTHO05D005429 2.1e-191 672.9 561 66.0
Prupe.7G257500 Prunus persica HOM05D004469 ORTHO05D005429 4.0e-190 668.7 557 65.9
TPR.G23109 Trifolium pratense HOM05D004469 ORTHO05D005429 6.8e-190 667.9 568 66.0
CiPaw.04G177500 Carya illinoinensis HOM05D004469 ORTHO05D005429 1.2e-189 667.2 557 65.5
Cfa002260 Carpinus fangiana HOM05D004469 ORTHO05D005429 1.6e-186 656.8 560 65.4
CSS0041761 Camellia sinensis var. sinensis HOM05D004469 ORTHO05D005429 7.7e-186 654.4 566 64.5
arahy.Tifrunner.gnm1.ann1.T08WW4 Arachis hypogaea HOM05D004469 ORTHO05D005429 2.2e-185 652.9 562 65.1
TWI32G1222 Tripterygium wilfordii HOM05D004469 ORTHO05D005429 2.9e-185 652.5 571 64.3
MD15G1162100 Malus domestica HOM05D004469 ORTHO05D005429 6.5e-185 651.4 567 64.2
Haze_25443 Corylus avellana HOM05D004469 ORTHO05D005429 2.5e-184 649.4 575 64.3
RcHm_v2.0_Chr2g0087051 Rosa chinensis HOM05D004469 ORTHO05D005429 7.5e-181 637.9 566 62.5
Cpa.g.sc46.70 Carica papaya HOM05D004469 ORTHO05D005429 9.8e-181 637.5 570 62.3
GSVIVG01012860001 Vitis vinifera HOM05D004469 ORTHO05D005429 9.8e-181 637.5 576 62.2
Nn2g12194 Nelumbo nucifera HOM05D004469 ORTHO05D005429 1.7e-180 636.7 560 63.6
PGR102G2677 Punica granatum HOM05D004469 ORTHO05D005429 6.3e-180 634.8 558 62.4
Sed0012323 Sechium edule HOM05D004469 ORTHO05D005429 2.4e-179 632.9 567 62.3
TAR625G0398 Trochodendron aralioides HOM05D004469 ORTHO05D005429 4.1e-179 632.1 566 62.7
Rhsim03G0253400 Rhododendron simsii HOM05D004469 ORTHO05D005429 1.2e-178 630.6 588 60.5
Atru.chr7.2015 Acer truncatum HOM05D004469 ORTHO05D005429 1.0e-177 627.5 555 63.2
Actinidia26357 Actinidia chinensis HOM05D004469 ORTHO05D005429 1.7e-177 626.7 572 60.5
Gohir.D08G101600 Gossypium hirsutum HOM05D004469 ORTHO05D005429 1.7e-177 626.7 558 64.0
Gohir.A08G091100 Gossypium hirsutum HOM05D004469 ORTHO05D005429 2.3e-177 626.3 559 63.3
Manes.14G119700 Manihot esculenta HOM05D004469 ORTHO05D005429 2.9e-177 625.9 569 61.9
Gorai.004G109600 Gossypium raimondii HOM05D004469 ORTHO05D005429 6.6e-177 624.8 558 64.2
RcHm_v2.0_Chr5g0061231 Rosa chinensis HOM05D004469 ORTHO05D005429 6.6e-177 624.8 581 60.1
Ciclev10007887m.g Citrus clementina HOM05D004469 ORTHO05D005429 1.9e-176 623.2 564 62.1
Migut.J01235 Erythranthe guttata HOM05D004469 ORTHO05D005429 1.9e-176 623.2 563 62.2
Thecc.09G137700 Theobroma cacao HOM05D004469 ORTHO05D005429 2.5e-176 622.9 566 62.4
Potri.018G118143 Populus trichocarpa HOM05D004469 ORTHO05D005429 7.3e-176 621.3 578 60.4
Duzib187G0975 Durio zibethinus HOM05D004469 ORTHO05D005429 2.1e-175 619.8 566 62.2
SalBow1G3789 Salvia bowleyana HOM05D004469 ORTHO05D005429 8.0e-175 617.8 558 60.6
ClCG11G003510 Citrullus lanatus HOM05D004469 ORTHO05D005429 5.2e-174 615.1 569 59.8
Sabra06G0044100 Salix brachista HOM05D004469 ORTHO05D005429 1.5e-173 613.6 578 59.9
FvH4_1g01990 Fragaria vesca HOM05D004469 ORTHO05D005429 2.0e-173 613.2 566 60.6
Lj9C704T18 Lonicera japonica HOM05D004469 ORTHO05D005429 2.6e-173 612.8 562 61.2
MELO3C004484.2 Cucumis melo HOM05D004469 ORTHO05D005429 1.7e-172 610.1 559 60.3
CAN.G1281.7 Capsicum annuum HOM05D004469 ORTHO05D005429 6.4e-172 608.2 567 60.0
Peaxi162Scf00088g00521 Petunia axillaris HOM05D004469 ORTHO05D005429 6.4e-172 608.2 565 60.7
FAN26G0918 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.1e-171 607.4 566 60.2
Nitab4.5_0002286g0020 Nicotiana tabacum HOM05D004469 ORTHO05D005429 7.0e-171 604.7 564 60.3
COL.COLO4_33364 Corchorus olitorius HOM05D004469 ORTHO05D005429 1.2e-170 604.0 566 60.2
CsaV3_2G003380 Cucumis sativus L. HOM05D004469 ORTHO05D005429 1.6e-170 603.6 561 58.6
MSTRG.19616 Avicennia marina HOM05D004469 ORTHO05D005429 3.5e-170 602.4 569 58.7
Nitab4.5_0002845g0050 Nicotiana tabacum HOM05D004469 ORTHO05D005429 1.0e-169 600.9 555 61.3
FAN28G2138 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.7e-169 600.1 582 58.6
ECA234G1865 Erigeron canadensis HOM05D004469 ORTHO05D005429 2.3e-169 599.7 557 59.6
FAN23G0971 Fragaria x ananassa HOM05D004469 ORTHO05D005429 5.0e-169 598.6 582 57.9
Lsat_1_v5_gn_5_92700 Lactuca sativa HOM05D004469 ORTHO05D005429 5.0e-169 598.6 555 59.6
EL10Ac8g18788 Beta vulgaris HOM05D004469 ORTHO05D005429 1.1e-168 597.4 564 59.9
FAN19G1855 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.5e-168 597.0 582 58.6
CANSAT11G1945 Cannabis sativa HOM05D004469 ORTHO05D005429 5.6e-168 595.1 563 59.0
Sc08g0006010 Simmondsia chinensis HOM05D004469 ORTHO05D005429 1.6e-167 593.6 555 59.3
Cc06_g07630 Coffea canephora HOM05D004469 ORTHO05D005429 1.0e-166 590.9 559 59.2
HanXRQChr10g0314151 Helianthus annuus HOM05D004469 ORTHO05D005429 3.1e-166 589.3 555 58.4
Aa31sc54G60 Aethionema arabicum HOM05D004469 ORTHO05D005429 3.4e-165 585.9 560 57.3
Sopen07g003440 Solanum pennellii HOM05D004469 ORTHO05D005429 7.5e-165 584.7 562 59.1
Solyc07g007370.3 Solanum lycopersicum HOM05D004469 ORTHO05D005429 2.9e-164 582.8 562 59.1
AUR62011228 Chenopodium quinoa HOM05D004469 ORTHO05D005429 3.7e-164 582.4 554 57.8
FAN21G2818 Fragaria x ananassa HOM05D004469 ORTHO05D005429 6.4e-164 581.6 574 57.7
PGSC0003DMG400030724 Solanum tuberosum HOM05D004469 ORTHO05D005429 2.4e-163 579.7 561 58.1
vmacro06114 Vaccinium macrocarpon HOM05D004469 ORTHO05D005429 3.2e-163 579.3 672 52.1
AUR62020006 Chenopodium quinoa HOM05D004469 ORTHO05D005429 7.8e-162 574.7 556 57.2
Aqoxy7G03591 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 3.0e-161 572.8 568 57.0
FAN11G3069 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.1e-160 570.9 571 56.6
FvH4_3g33700 Fragaria vesca HOM05D004469 ORTHO05D005429 1.9e-160 570.1 571 56.6
Hund09311 Selenicereus undatus HOM05D004469 ORTHO05D005429 3.3e-160 569.3 567 57.3
arahy.Tifrunner.gnm1.ann1.FNUG0A Arachis hypogaea HOM05D004469 ORTHO05D005429 2.1e-159 566.6 587 57.2
AL3G45030 Arabidopsis lyrata HOM05D004469 ORTHO05D005429 4.7e-159 565.5 589 53.1
Carub.0003s2782 Capsella rubella HOM05D004469 ORTHO05D005429 8.9e-158 561.2 572 53.8
DCAR_014918 Daucus carota HOM05D004469 ORTHO05D005429 4.4e-157 558.9 560 56.2
CARHR105080 Cardamine hirsuta HOM05D004469 ORTHO05D005429 5.8e-157 558.5 561 54.7
BolC3t17859H Brassica oleracea HOM05D004469 ORTHO05D005429 6.4e-156 555.1 580 52.8
C03p55780 Brassica napus HOM05D004469 ORTHO05D005429 8.3e-156 554.7 580 52.8
Sabra18G0101500 Salix brachista HOM05D004469 ORTHO05D005429 1.9e-155 553.5 579 55.6
BraA03t13626Z Brassica rapa HOM05D004469 ORTHO05D005429 9.2e-155 551.2 580 53.1
ATR0767G179 Amborella trichopoda HOM05D004469 ORTHO05D005429 1.6e-154 550.4 554 55.2
MBI14_g24228_MAGBIO Magnolia biondii HOM05D004469 ORTHO05D005429 2.1e-154 550.1 562 56.6
AT2G12550 Arabidopsis thaliana HOM05D004469 ORTHO05D005429 4.6e-154 548.9 586 53.6
Sabra18G0099700 Salix brachista HOM05D004469 ORTHO05D005429 1.7e-153 547.0 583 54.7
Sp3g26680 Schrenkiella parvula HOM05D004469 ORTHO05D005429 1.7e-153 547.0 569 53.4
THA.LOC104808947 Tarenaya hassleriana HOM05D004469 ORTHO05D005429 2.3e-153 546.6 568 53.5
BcaB08g34526 Brassica carinata HOM05D004469 ORTHO05D005429 3.0e-153 546.2 583 52.3
A03p44900 Brassica napus HOM05D004469 ORTHO05D005429 3.0e-153 546.2 580 52.2
Thhalv10022623m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 9.5e-152 541.2 590 51.5
Oeu028017.1 Olea europaea HOM05D004469 ORTHO05D005429 1.6e-151 540.4 550 56.5
PSO210G6517 Papaver somniferum HOM05D004469 ORTHO05D005429 3.6e-151 539.3 568 55.8
Thhalv10001944m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 7.1e-147 525.0 575 51.5
unitig_27.g25106 Utricularia gibba HOM05D004469 ORTHO05D005429 3.9e-145 519.2 581 52.3
Glyma.17G107100 Glycine max HOM05D004469 ORTHO05D005429 4.0e-142 509.2 565 55.4
Aqoxy3G02754 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 1.3e-135 487.6 452 59.3
Eucgr.L03235 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.1e-134 484.6 422 63.3
HPP92_003256 Vanilla planifolia HOM05D004469 ORTHO05D005429 3.1e-134 483.0 549 51.4
Dinv41443 Davidia involucrata HOM05D004469 ORTHO05D005429 1.2e-133 481.1 414 65.2
Potri.006G061500 Populus trichocarpa HOM05D004469 ORTHO05D005429 1.8e-126 457.2 432 58.8
FAN25G0032 Fragaria x ananassa HOM05D004469 ORTHO05D005429 9.9e-125 451.4 503 53.5
SEGI_05144 Sequoiadendron giganteum HOM05D004469 ORTHO05D005429 4.2e-123 446.0 568 45.1
Duzib168G2240 Durio zibethinus HOM05D004469 ORTHO05D005429 4.6e-122 442.6 556 50.9
FAN16G0997 Fragaria x ananassa HOM05D004469 ORTHO05D005429 3.3e-120 436.4 514 50.4
Pp3c3_18690 Physcomitrium patens HOM05D004469 ORTHO05D005429 2.2e-116 423.7 557 44.0
Eucgr.L03187 Eucalyptus grandis HOM05D004469 ORTHO05D005429 3.2e-115 419.9 301 71.8
Zm00001eb068670 Zea mays HOM05D004469 ORTHO05D005429 2.5e-112 410.2 583 44.1
Actinidia14229 Actinidia chinensis HOM05D004469 ORTHO05D005429 1.3e-111 407.9 353 62.3
Mapoly0101s0042 Marchantia polymorpha HOM05D004469 ORTHO05D005429 4.1e-110 402.9 554 43.5
AagrBONN_evm.TU.Sc2ySwM_344.1954 Anthoceros agrestis HOM05D004469 ORTHO05D005429 7.2e-107 392.1 564 42.7
Duzib168G2148 Durio zibethinus HOM05D004469 ORTHO05D005429 1.3e-105 387.9 281 70.8
arahy.Tifrunner.gnm1.ann1.WC6UXQ Arachis hypogaea HOM05D004469 ORTHO05D005429 7.2e-99 365.5 480 48.5
SMO367G0076 Selaginella moellendorffii HOM05D004469 ORTHO05D005429 2.7e-98 363.6 567 39.0
BcaC01g03128 Brassica carinata HOM05D004469 ORTHO05D005429 3.9e-97 359.8 402 49.3
arahy.Tifrunner.gnm1.ann1.CP8KSN Arachis hypogaea HOM05D004469 ORTHO05D005429 3.7e-95 353.2 513 46.6
RcHm_v2.0_Chr5g0016251 Rosa chinensis HOM05D004469 ORTHO05D005429 2.7e-82 310.5 465 43.4
CDE05G2521 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 4.0e-73 280.0 341 51.0
CiPaw.04G177800 Carya illinoinensis HOM05D004469 ORTHO05D005429 1.8e-70 271.2 315 52.4
RcHm_v2.0_Chr1g0341141 Rosa chinensis HOM05D004469 ORTHO05D005429 1.7e-60 238.0 225 57.3
Cre03.g205650 Chlamydomonas reinhardtii HOM05D004469 ORTHO05D005429 5.0e-60 236.5 419 37.0
FAN28G2979 Fragaria x ananassa HOM05D004469 ORTHO05D005429 3.3e-59 233.8 251 55.8
Nitab4.5_0010073g0010 Nicotiana tabacum HOM05D004469 ORTHO05D005429 2.0e-56 224.6 157 72.6
RcHm_v2.0_Chr5g0079831 Rosa chinensis HOM05D004469 ORTHO05D005429 5.7e-56 223.0 490 36.5
Eucgr.C04403 Eucalyptus grandis HOM05D004469 ORTHO05D005429 3.0e-52 210.7 179 63.7
Eucgr.C04399 Eucalyptus grandis HOM05D004469 ORTHO05D005429 2.0e-45 188.0 141 70.2
CBR_g57083 Chara braunii HOM05D000019 ORTHO05D000048 1.9e-43 181.4 316 40.5
RcHm_v2.0_Chr5g0061311 Rosa chinensis HOM05D004469 ORTHO05D005429 1.1e-41 175.6 139 66.2
RcHm_v2.0_Chr5g0072041 Rosa chinensis HOM05D004469 ORTHO05D005429 2.1e-37 161.4 138 62.3
RcHm_v2.0_Chr5g0016141 Rosa chinensis HOM05D004469 ORTHO05D005429 8.6e-36 156.0 119 67.2
RcHm_v2.0_Chr1g0314541 Rosa chinensis HOM05D004469 ORTHO05D005429 9.5e-35 152.5 119 65.5
CDE05G0946 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 3.2e-30 137.5 145 49.7
RcHm_v2.0_Chr5g0072051 Rosa chinensis HOM05D004469 ORTHO05D005429 1.1e-22 112.5 286 33.6
RcHm_v2.0_Chr2g0147321 Rosa chinensis HOM05D004469 ORTHO05D005429 2.7e-21 107.8 84 64.3
CBR_g42181 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-20 105.5 180 40.0
RcHm_v2.0_Chr5g0016131 Rosa chinensis HOM05D004469 ORTHO05D005429 9.6e-19 99.4 88 60.2
Aqoxy4G01419 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 1.2e-16 92.4 108 50.0
Oeu028136.1 Olea europaea HOM05D004469 ORTHO05D005429 1.3e-15 89.0 185 36.8
Eucgr.E04270 Eucalyptus grandis HOM05D000097 ORTHO05D000041 9.3e-14 82.8 56 66.1
HanXRQChr04g0107841 Helianthus annuus HOM05D004469 ORTHO05D005429 3.0e-12 77.8 67 59.7
RcHm_v2.0_Chr7g0241381 Rosa chinensis HOM05D004469 ORTHO05D005429 3.3e-11 74.3 153 40.5
RcHm_v2.0_Chr7g0241361 Rosa chinensis HOM05D004469 ORTHO05D005429 5.6e-11 73.6 42 78.6
RcHm_v2.0_Chr5g0069491 Rosa chinensis HOM05D004469 ORTHO05D005429 3.4e-08 64.3 48 68.8
Eucgr.E04269 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.3e-07 62.4 46 67.4
RcHm_v2.0_Chr5g0016151 Rosa chinensis HOM05D004469 ORTHO05D005429 6.4e-07 60.1 167 31.7
arahy.Tifrunner.gnm1.ann1.RZAJ21 Arachis hypogaea HOM05D004469 ORTHO05D005429 8.4e-07 59.7 41 70.7
Os04g0644300 Oryza sativa ssp. japonica HOM05D004469 ORTHO05D005429 1.1e-06 59.3 189 34.4
RcHm_v2.0_Chr2g0147341 Rosa chinensis HOM05D004469 ORTHO05D005429 1.1e-06 59.3 153 36.6
arahy.Tifrunner.gnm1.ann1.770ATG Arachis hypogaea HOM05D004469 ORTHO05D005429 1.4e-06 58.9 43 67.4
Thecc.08G193600 Theobroma cacao HOM05D004469 ORTHO05D005429 9.3e-06 56.2 49 55.1


User provided reference genes

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