Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0072381 Lupinus albus HOM05D000028 ORTHO05D239296 1.8e-93 345.9 172 100.0
Lalb_Chr21g0310141 Lupinus albus HOM05D000028 ORTHO05D004287 1.0e-16 90.9 282 29.8
Lalb_Chr18g0046141 Lupinus albus HOM05D000028 ORTHO05D004287 9.4e-10 67.8 49 61.2
Glyma.19G227000 Glycine max HOM05D000028 ORTHO05D004287 3.6e-09 65.9 63 47.6
Glyma.19G227900 Glycine max HOM05D000028 ORTHO05D004287 3.6e-09 65.9 63 47.6
Lalb_Chr04g0260341 Lupinus albus HOM05D000028 ORTHO05D004287 3.6e-09 65.9 50 56.0
Glyma.20G094100 Glycine max HOM05D000028 ORTHO05D004287 4.7e-09 65.5 55 58.2
ClCG02G014730 Citrullus lanatus HOM05D000028 ORTHO05D004287 1.0e-08 64.3 52 59.6
Glyma.03G229700 Glycine max HOM05D000028 ORTHO05D004287 1.4e-08 63.9 44 61.4
VMungo1383G1233 Vigna mungo HOM05D000028 ORTHO05D004287 1.4e-08 63.9 47 59.6
Glyma.10G145000 Glycine max HOM05D000028 ORTHO05D004287 1.8e-08 63.5 150 32.0
QL12p035279 Quercus lobata HOM05D000028 ORTHO05D004287 3.9e-08 62.4 136 32.4
TAR362G1240 Trochodendron aralioides HOM05D000049 ORTHO05D000027 3.9e-08 62.4 50 56.0
PGSC0003DMG400029254 Solanum tuberosum HOM05D000028 ORTHO05D004287 5.2e-08 62.0 94 40.4
CSS0044263 Camellia sinensis var. sinensis HOM05D000028 ORTHO05D004287 6.7e-08 61.6 38 68.4
Lj1g0007158 Lotus japonicus HOM05D000028 ORTHO05D004287 6.7e-08 61.6 45 62.2
Dinv24484 Davidia involucrata HOM05D000028 ORTHO05D004287 8.8e-08 61.2 48 60.4
A06p06130 Brassica napus HOM05D000028 ORTHO05D004287 1.1e-07 60.8 40 65.0
C05p07410 Brassica napus HOM05D000028 ORTHO05D004287 1.1e-07 60.8 40 65.0
BolC5t29497H Brassica oleracea HOM05D000028 ORTHO05D004287 1.1e-07 60.8 40 65.0
BraA06t23820Z Brassica rapa HOM05D000028 ORTHO05D004287 1.1e-07 60.8 40 65.0
Medtr7g111830 Medicago truncatula HOM05D000028 ORTHO05D004287 1.1e-07 60.8 41 65.9
Phvul.001G223600 Phaseolus vulgaris HOM05D000028 ORTHO05D004287 1.1e-07 60.8 49 57.1
VMungo1034G0001 Vigna mungo HOM05D000028 ORTHO05D004287 2.0e-07 60.1 46 60.9
Lj5g0010387 Lotus japonicus HOM05D000028 ORTHO05D004287 2.6e-07 59.7 139 32.4
SGA_v2.0_scaffold4G01987 Striga asiatica HOM05D000028 ORTHO05D004287 2.6e-07 59.7 50 54.0
arahy.Tifrunner.gnm1.ann1.5N61PX Arachis hypogaea HOM05D000028 ORTHO05D004287 3.3e-07 59.3 110 40.0
arahy.Tifrunner.gnm1.ann1.QUP57E Arachis hypogaea HOM05D000028 ORTHO05D004287 3.3e-07 59.3 110 40.0
BcaC07g41881 Brassica carinata HOM05D000028 ORTHO05D004287 3.3e-07 59.3 41 61.0
A09p65500 Brassica napus HOM05D000028 ORTHO05D004287 3.3e-07 59.3 41 61.0
C08p49480 Brassica napus HOM05D000028 ORTHO05D004287 3.3e-07 59.3 41 61.0
BolC8t52485H Brassica oleracea HOM05D000028 ORTHO05D004287 3.3e-07 59.3 41 61.0
BraA09t41895Z Brassica rapa HOM05D000028 ORTHO05D004287 3.3e-07 59.3 41 61.0
CSS0031525 Camellia sinensis var. sinensis HOM05D000028 ORTHO05D004287 3.3e-07 59.3 61 52.5
CiPaw.07G032900 Carya illinoinensis HOM05D000028 ORTHO05D004287 3.3e-07 59.3 37 70.3
Solyc12g096850.3 Solanum lycopersicum HOM05D000028 ORTHO05D004287 3.3e-07 59.3 45 57.8
FAN18G2924 Fragaria x ananassa HOM05D000028 ORTHO05D004287 4.4e-07 58.9 140 33.6
QL03p013090 Quercus lobata HOM05D000028 ORTHO05D004287 4.4e-07 58.9 46 56.5
Sp1g07990 Schrenkiella parvula HOM05D000028 ORTHO05D004287 4.4e-07 58.9 41 61.0
Sed0026607 Sechium edule HOM05D000028 ORTHO05D004287 4.4e-07 58.9 44 52.3
Atru.chr12.1628 Acer truncatum HOM05D000049 ORTHO05D000027 5.7e-07 58.5 48 60.4
Aqoxy5G02740 Aquilegia oxysepala HOM05D000028 ORTHO05D004287 5.7e-07 58.5 46 54.3
CARHR009340 Cardamine hirsuta HOM05D000028 ORTHO05D004287 5.7e-07 58.5 39 61.5
Cfa006731 Carpinus fangiana HOM05D000028 ORTHO05D004287 5.7e-07 58.5 37 70.3
Medtr1g030400 Medicago truncatula HOM05D000028 ORTHO05D004287 5.7e-07 58.5 41 61.0
Nitab4.5_0002783g0140 Nicotiana tabacum HOM05D000028 ORTHO05D004287 5.7e-07 58.5 46 50.0
TPR.G1611 Trifolium pratense HOM05D000028 ORTHO05D004287 5.7e-07 58.5 42 61.9
Actinidia01669 Actinidia chinensis HOM05D000028 ORTHO05D004287 7.4e-07 58.2 38 63.2
MD04G1190500 Malus domestica HOM05D000028 ORTHO05D004287 7.4e-07 58.2 133 30.8
MD12G1202700 Malus domestica HOM05D000028 ORTHO05D004287 7.4e-07 58.2 133 31.6
Aqoxy4G00645 Aquilegia oxysepala HOM05D000028 ORTHO05D004287 9.7e-07 57.8 37 67.6
arahy.Tifrunner.gnm1.ann1.P8QM2T Arachis hypogaea HOM05D000028 ORTHO05D004287 9.7e-07 57.8 39 66.7
arahy.Tifrunner.gnm1.ann1.YMSH9Z Arachis hypogaea HOM05D000028 ORTHO05D004287 9.7e-07 57.8 39 66.7
Ciclev10012006m.g Citrus clementina HOM05D000028 ORTHO05D004287 9.7e-07 57.8 43 51.2
EL10Ac4g09513 Beta vulgaris HOM05D000028 ORTHO05D004287 1.3e-06 57.4 40 62.5
MELO3C004162.2 Cucumis melo HOM05D000028 ORTHO05D004287 1.3e-06 57.4 41 58.5
Thhalv10007900m.g Eutrema salsugineum HOM05D000028 ORTHO05D004287 1.3e-06 57.4 41 58.5
FAN18G1916 Fragaria x ananassa HOM05D000028 ORTHO05D004287 1.3e-06 57.4 126 33.3
HanXRQChr11g0328701 Helianthus annuus HOM05D000028 ORTHO05D004287 1.3e-06 57.4 42 57.1
Hma1.2p1_1553F.1_g290250 Hydrangea macrophylla HOM05D000028 ORTHO05D004287 1.3e-06 57.4 37 64.9
Potri.005G006600 Populus trichocarpa HOM05D000028 ORTHO05D004287 1.3e-06 57.4 39 61.5
Cc02_g35440 Coffea canephora HOM05D000028 ORTHO05D004287 1.7e-06 57.0 37 62.2
Dinv30924 Davidia involucrata HOM05D000028 ORTHO05D004287 1.7e-06 57.0 37 62.2
Eucgr.H01288 Eucalyptus grandis HOM05D000028 ORTHO05D004287 1.7e-06 57.0 46 52.2
HanXRQChr11g0328681 Helianthus annuus HOM05D000028 ORTHO05D004287 1.7e-06 57.0 49 53.1
PSO170G1848 Papaver somniferum HOM05D000028 ORTHO05D004287 1.7e-06 57.0 38 63.2
PSO724G0754 Papaver somniferum HOM05D000028 ORTHO05D004287 1.7e-06 57.0 38 63.2
THA.LOC104816852 Tarenaya hassleriana HOM05D000028 ORTHO05D004287 1.7e-06 57.0 46 52.2
TWI12G0367 Tripterygium wilfordii HOM05D000028 ORTHO05D004287 1.7e-06 57.0 53 49.1
Ca_09287_v3 Cicer arietinum L. HOM05D000028 ORTHO05D004287 2.2e-06 56.6 37 64.9
Haze_04028 Corylus avellana HOM05D000028 ORTHO05D004287 2.2e-06 56.6 36 69.4
Gohir.A13G176900 Gossypium hirsutum HOM05D000028 ORTHO05D004287 2.2e-06 56.6 149 29.5
Manes.08G109200 Manihot esculenta HOM05D000028 ORTHO05D004287 2.2e-06 56.6 36 69.4
PSO339G6141 Papaver somniferum HOM05D000028 ORTHO05D004287 2.2e-06 56.6 40 60.0
CANSAT54G0049 Cannabis sativa HOM05D000028 ORTHO05D004287 2.8e-06 56.2 37 64.9
Manes.09G179300 Manihot esculenta HOM05D000028 ORTHO05D004287 2.8e-06 56.2 37 64.9
Psat3g014440 Pisum sativum HOM05D000028 ORTHO05D004287 2.8e-06 56.2 39 59.0
TWI56G0669 Tripterygium wilfordii HOM05D000028 ORTHO05D004287 2.8e-06 56.2 36 66.7
CDE02G3389 Ceratophyllum demersum HOM05D000028 ORTHO05D004287 3.7e-06 55.8 41 58.5
AUR62006782 Chenopodium quinoa HOM05D000028 ORTHO05D004287 3.7e-06 55.8 50 54.0
COL.COLO4_05515 Corchorus olitorius HOM05D000028 ORTHO05D004287 3.7e-06 55.8 149 30.2
CsaV3_2G007260 Cucumis sativus L. HOM05D000028 ORTHO05D004716 3.7e-06 55.8 41 58.5
Migut.B00852 Erythranthe guttata HOM05D000028 ORTHO05D004287 3.7e-06 55.8 38 60.5
Eucgr.H01303 Eucalyptus grandis HOM05D000028 ORTHO05D004287 3.7e-06 55.8 50 46.0
Nn3g21839 Nelumbo nucifera HOM05D000028 ORTHO05D004287 3.7e-06 55.8 45 53.3
Nitab4.5_0008446g0010 Nicotiana tabacum HOM05D000028 ORTHO05D004287 3.7e-06 55.8 41 58.5
Nitab4.5_0010638g0010 Nicotiana tabacum HOM05D000028 ORTHO05D004287 3.7e-06 55.8 46 47.8
Rhsim05G0130300 Rhododendron simsii HOM05D000028 ORTHO05D004287 3.7e-06 55.8 38 65.8
RcHm_v2.0_Chr3g0457731 Rosa chinensis HOM05D000028 ORTHO05D004287 3.7e-06 55.8 36 69.4
Carub.0001s0872 Capsella rubella HOM05D000028 ORTHO05D004287 4.8e-06 55.5 41 51.2
FvH4_5g33020 Fragaria vesca HOM05D000028 ORTHO05D004287 4.8e-06 55.5 39 64.1
Lsat_1_v5_gn_9_79241 Lactuca sativa HOM05D000028 ORTHO05D004287 4.8e-06 55.5 44 59.1
Lsat_1_v5_gn_9_79401 Lactuca sativa HOM05D000028 ORTHO05D004287 4.8e-06 55.5 44 59.1
Medtr2g007260 Medicago truncatula HOM05D000028 ORTHO05D001343 4.8e-06 55.5 39 64.1
Nitab4.5_0003044g0010 Nicotiana tabacum HOM05D000028 ORTHO05D004287 4.8e-06 55.5 37 56.8
Nitab4.5_0007724g0020 Nicotiana tabacum HOM05D000028 ORTHO05D004287 4.8e-06 55.5 37 56.8
Oeu053746.1 Olea europaea HOM05D000028 ORTHO05D004287 4.8e-06 55.5 37 59.5
SalBow7G0987 Salvia bowleyana HOM05D000028 ORTHO05D004287 4.8e-06 55.5 36 63.9
Ah.06g196260 Amaranthus hybridus HOM05D000028 ORTHO05D004287 6.3e-06 55.1 44 52.3
Duzib177G0687 Durio zibethinus HOM05D000028 ORTHO05D004287 6.3e-06 55.1 160 28.8
Gohir.D13G183400 Gossypium hirsutum HOM05D000028 ORTHO05D004287 6.3e-06 55.1 132 31.1
Gorai.013G208700 Gossypium raimondii HOM05D000028 ORTHO05D004287 6.3e-06 55.1 132 31.1
Lalb_Chr20g0123281 Lupinus albus HOM05D000028 ORTHO05D001343 6.3e-06 55.1 36 69.4
Peaxi162Scf00357g00064 Petunia axillaris HOM05D000028 ORTHO05D004287 6.3e-06 55.1 37 59.5
Prupe.6G308500 Prunus persica HOM05D000028 ORTHO05D004287 6.3e-06 55.1 36 69.4
CsaV3_1G015750 Cucumis sativus L. HOM05D000028 ORTHO05D004287 8.2e-06 54.7 37 59.5
FvH4_6g08060 Fragaria vesca HOM05D000028 ORTHO05D004287 8.2e-06 54.7 36 66.7
FAN02G1015 Fragaria x ananassa HOM05D000028 ORTHO05D004287 8.2e-06 54.7 36 66.7
FAN05G4858 Fragaria x ananassa HOM05D000028 ORTHO05D004287 8.2e-06 54.7 36 66.7
FAN09G3779 Fragaria x ananassa HOM05D000028 ORTHO05D004287 8.2e-06 54.7 36 66.7
FAN14G4142 Fragaria x ananassa HOM05D000028 ORTHO05D004287 8.2e-06 54.7 36 66.7
Glyma.03G102300 Glycine max HOM05D000028 ORTHO05D000296 8.2e-06 54.7 56 44.6
Glyma.15G049800 Glycine max HOM05D000028 ORTHO05D001343 8.2e-06 54.7 39 64.1
PGSC0003DMG400004233 Solanum tuberosum HOM05D000028 ORTHO05D004287 8.2e-06 54.7 50 50.0


User provided reference genes

Program Settings