Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0071961 Lupinus albus HOM05D006752 ORTHO05D008597 7.2e-229 797.0 424 100.0
Lj1g0009545 Lotus japonicus HOM05D006752 ORTHO05D008597 1.4e-152 543.5 465 65.8
Medtr2g050180 Medicago truncatula HOM05D006752 ORTHO05D008597 7.4e-149 531.2 412 67.5
VMungo1309G1199 Vigna mungo HOM05D006752 ORTHO05D008597 3.1e-147 525.8 433 67.4
TPR.G10362 Trifolium pratense HOM05D006752 ORTHO05D008597 6.5e-145 518.1 401 67.6
arahy.Tifrunner.gnm1.ann1.CJP391 Arachis hypogaea HOM05D006752 ORTHO05D008597 8.8e-142 507.7 412 67.2
Glyma.06G211500 Glycine max HOM05D006752 ORTHO05D008597 1.9e-141 506.5 422 67.8
arahy.Tifrunner.gnm1.ann1.TG1F9L Arachis hypogaea HOM05D006752 ORTHO05D008597 6.3e-140 501.5 428 64.5
Psat1g025400 Pisum sativum HOM05D006752 ORTHO05D008597 8.2e-140 501.1 413 65.6
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 4.5e-138 495.4 419 66.1
GSVIVG01015454001 Vitis vinifera HOM05D006752 ORTHO05D008597 1.5e-117 427.2 388 59.8
CiPaw.04G167500 Carya illinoinensis HOM05D006752 ORTHO05D008597 5.9e-114 415.2 463 50.8
CSS0021299 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 2.5e-112 409.8 414 54.8
Atru.chr7.1279 Acer truncatum HOM05D006752 ORTHO05D008597 3.2e-112 409.5 419 54.7
CANSAT56G2958 Cannabis sativa HOM05D006752 ORTHO05D008597 7.2e-112 408.3 393 57.3
Thecc.09G116900 Theobroma cacao HOM05D006752 ORTHO05D008597 1.2e-111 407.5 418 55.0
FAN26G3101 Fragaria x ananassa HOM05D006752 ORTHO05D008597 1.6e-111 407.1 408 55.6
FAN28G1533 Fragaria x ananassa HOM05D006752 ORTHO05D008597 4.7e-111 405.6 414 55.8
FvH4_1g04220 Fragaria vesca HOM05D006752 ORTHO05D008597 6.1e-111 405.2 398 56.0
RcHm_v2.0_Chr2g0089761 Rosa chinensis HOM05D006752 ORTHO05D008597 1.0e-110 404.4 415 55.9
FAN19G2061 Fragaria x ananassa HOM05D006752 ORTHO05D008597 2.3e-110 403.3 411 54.7
Actinidia20330 Actinidia chinensis HOM05D006752 ORTHO05D008597 2.0e-109 400.2 415 55.2
Prupe.7G235200 Prunus persica HOM05D006752 ORTHO05D008597 4.4e-109 399.1 415 55.2
Dinv41564 Davidia involucrata HOM05D006752 ORTHO05D008088 8.3e-108 394.8 372 59.7
Haze_25667 Corylus avellana HOM05D006752 ORTHO05D008597 1.3e-105 387.5 378 57.1
Duzib168G0331 Durio zibethinus HOM05D006752 ORTHO05D008597 1.3e-105 387.5 398 54.8
MD02G1061400 Malus domestica HOM05D006752 ORTHO05D008597 3.3e-104 382.9 403 52.9
TWI34G0637 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 4.2e-104 382.5 378 55.3
Ah.14g081300 Amaranthus hybridus HOM05D006752 ORTHO05D008597 6.1e-103 378.6 392 53.6
HanXRQChr10g0317451 Helianthus annuus HOM05D006752 ORTHO05D008597 1.4e-102 377.5 402 50.5
Nitab4.5_0005520g0050 Nicotiana tabacum HOM05D006752 ORTHO05D008597 6.8e-102 375.2 407 52.6
COL.COLO4_34948 Corchorus olitorius HOM05D006393 ORTHO05D008088 1.5e-101 374.0 395 54.2
ClCG06G010500 Citrullus lanatus HOM05D006752 ORTHO05D008597 5.7e-101 372.1 393 52.2
Gohir.D06G058000 Gossypium hirsutum HOM05D006752 ORTHO05D008597 9.8e-101 371.3 406 52.0
Rhsim01G0090500 Rhododendron simsii HOM05D006752 ORTHO05D008597 9.8e-101 371.3 411 51.8
vmacro20678 Vaccinium macrocarpon HOM05D006752 ORTHO05D008597 9.8e-101 371.3 382 54.7
Gorai.010G068100 Gossypium raimondii HOM05D006752 ORTHO05D008597 2.8e-100 369.8 394 52.5
Nitab4.5_0001164g0060 Nicotiana tabacum HOM05D006752 ORTHO05D008597 3.7e-100 369.4 407 52.6
Gohir.A06G059800 Gossypium hirsutum HOM05D006752 ORTHO05D008597 4.9e-100 369.0 407 50.9
EL10Ac8g18558 Beta vulgaris HOM05D006752 ORTHO05D008597 8.3e-100 368.2 408 52.2
PGR142G0135 Punica granatum HOM05D006752 ORTHO05D008597 1.2e-98 364.4 405 53.1
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 2.7e-98 363.2 446 47.8
ECA234G0120 Erigeron canadensis HOM05D006752 ORTHO05D008597 2.3e-97 360.1 403 50.6
Solyc12g006710.3 Solanum lycopersicum HOM05D006752 ORTHO05D008597 2.9e-97 359.8 386 53.1
PGSC0003DMG400020684 Solanum tuberosum HOM05D006752 ORTHO05D008597 3.8e-97 359.4 397 53.1
Potri.018G073100 Populus trichocarpa HOM05D006752 ORTHO05D008597 5.0e-97 359.0 481 46.2
Sopen12g002660 Solanum pennellii HOM05D006752 ORTHO05D008597 1.1e-96 357.8 386 53.1
QL02p086379 Quercus lobata HOM05D006752 ORTHO05D008597 3.3e-96 356.3 539 42.9
Hund09171 Selenicereus undatus HOM05D006752 ORTHO05D008597 1.2e-95 354.4 366 54.1
Eucgr.C01084 Eucalyptus grandis HOM05D006752 ORTHO05D008597 2.1e-95 353.6 392 50.8
CAN.G377.33 Capsicum annuum HOM05D006752 ORTHO05D008597 3.6e-95 352.8 405 50.6
MELO3C025306.2 Cucumis melo HOM05D006752 ORTHO05D008597 4.7e-95 352.4 457 46.8
Sed0015690 Sechium edule HOM05D006752 ORTHO05D008597 8.9e-94 348.2 395 49.9
Sc08g0007050 Simmondsia chinensis HOM05D006752 ORTHO05D008597 8.9e-94 348.2 400 49.2
Sabra18G0063600 Salix brachista HOM05D006752 ORTHO05D008597 3.4e-93 346.3 482 45.6
Lj7C639G3 Lonicera japonica HOM05D006752 ORTHO05D008597 1.3e-92 344.4 440 49.8
Nn8g39294 Nelumbo nucifera HOM05D006752 ORTHO05D008597 3.7e-92 342.8 390 50.0
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 1.4e-91 340.9 389 50.1
Ca_05468_v3 Cicer arietinum L. HOM05D006752 ORTHO05D008597 2.7e-90 336.7 223 78.9
DCAR_010437 Daucus carota HOM05D006752 ORTHO05D008597 7.8e-90 335.1 409 49.4
AUR62033416 Chenopodium quinoa HOM05D006752 ORTHO05D008597 8.6e-89 331.6 402 50.5
THA.LOC104815109 Tarenaya hassleriana HOM05D006752 ORTHO05D008597 1.9e-88 330.5 409 46.0
Cpa.g.sc23.163 Carica papaya HOM05D006752 ORTHO05D008597 1.2e-87 327.8 431 45.2
Cc06_g09220 Coffea canephora HOM05D006752 ORTHO05D008597 6.2e-87 325.5 397 48.6
Aqoxy7G01881 Aquilegia oxysepala HOM05D006752 ORTHO05D008597 1.1e-86 324.7 380 48.9
Lsat_1_v5_gn_5_99240 Lactuca sativa HOM05D006752 ORTHO05D008597 8.3e-84 315.1 390 45.9
Peaxi162Scf00984g00260 Petunia axillaris HOM05D006752 ORTHO05D008597 4.6e-82 309.3 406 47.0
BcaC04g19401 Brassica carinata HOM05D006752 ORTHO05D008597 3.9e-81 306.2 423 45.4
C09p56100 Brassica napus HOM05D006752 ORTHO05D008597 3.9e-81 306.2 423 45.4
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 6.6e-81 305.4 407 45.7
Thhalv10013545m.g Eutrema salsugineum HOM05D006752 ORTHO05D008597 1.9e-80 303.9 424 45.3
AL6G31480 Arabidopsis lyrata HOM05D006752 ORTHO05D008597 4.3e-80 302.8 416 43.8
BolC9t58477H Brassica oleracea HOM05D006752 ORTHO05D008597 4.3e-80 302.8 423 45.2
Sp6g24430 Schrenkiella parvula HOM05D006752 ORTHO05D008597 7.3e-80 302.0 412 44.7
A10p19780 Brassica napus HOM05D006752 ORTHO05D008597 1.2e-79 301.2 425 44.5
BraA10t44054Z Brassica rapa HOM05D006752 ORTHO05D008597 1.2e-79 301.2 425 44.5
Carub.0006s1832 Capsella rubella HOM05D006752 ORTHO05D008597 1.8e-78 297.4 415 43.9
ATR0815G047 Amborella trichopoda HOM05D006752 ORTHO05D008597 2.3e-78 297.0 419 42.0
AUR62011040 Chenopodium quinoa HOM05D006393 ORTHO05D008088 1.5e-77 294.3 311 53.4
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 3.4e-77 293.1 405 44.7
AT5G19950 Arabidopsis thaliana HOM05D006752 ORTHO05D008597 7.5e-77 292.0 407 44.0
SGA_v2.0_scaffold229G43313 Striga asiatica HOM05D006752 ORTHO05D008597 1.7e-76 290.8 402 42.8
BcaB08g36551 Brassica carinata HOM05D006752 ORTHO05D008597 1.4e-75 287.7 417 43.6
MBI01_g13570_MAGBIO Magnolia biondii HOM05D006752 ORTHO05D008597 1.9e-75 287.3 462 41.1
Aa31LG8G9350 Aethionema arabicum HOM05D006752 ORTHO05D008597 3.2e-75 286.6 403 43.7
HPP92_008698 Vanilla planifolia HOM05D006752 ORTHO05D008597 3.0e-73 280.0 396 43.4
Oeu018257.1 Olea europaea HOM05D006752 ORTHO05D008597 6.6e-73 278.9 352 48.0
CDE02G1475 Ceratophyllum demersum HOM05D006752 ORTHO05D008597 8.6e-73 278.5 334 46.7
SalBow6G5676 Salvia bowleyana HOM05D006752 ORTHO05D008597 1.5e-72 277.7 402 42.5
Os01g0178100 Oryza sativa ssp. japonica HOM05D006752 ORTHO05D008597 2.4e-70 270.4 383 43.6
MSTRG.19609 Avicennia marina HOM05D006752 ORTHO05D008597 2.4e-67 260.4 416 40.1
Actinidia09396 Actinidia chinensis HOM05D006393 ORTHO05D008088 4.6e-66 256.1 382 43.7
Migut.J01179 Erythranthe guttata HOM05D006752 ORTHO05D008597 1.5e-64 251.1 405 40.0
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 1.3e-60 238.0 184 66.3
CsaV3_1G030960 Cucumis sativus L. HOM05D006752 ORTHO05D008597 2.9e-52 210.3 263 49.0
Sc08g0007030 Simmondsia chinensis HOM05D006752 ORTHO05D008597 3.5e-50 203.4 192 55.2
SEGI_05783 Sequoiadendron giganteum HOM05D006752 ORTHO05D008597 1.6e-47 194.5 483 33.3
Ca_30697_v3 Cicer arietinum L. HOM05D006752 ORTHO05D008597 1.4e-38 164.9 124 70.2
Pp3c9_1660 Physcomitrium patens HOM05D006752 ORTHO05D008597 2.4e-38 164.1 466 31.5
Pp3c9_1669 Physcomitrium patens HOM05D006752 ORTHO05D008597 2.4e-38 164.1 466 31.5
Cc08_g07650 Coffea canephora HOM05D006752 ORTHO05D008597 4.3e-32 143.3 125 60.0
Mapoly0040s0028 Marchantia polymorpha HOM05D006752 ORTHO05D008597 9.7e-32 142.1 541 26.8
MD00G1026200 Malus domestica HOM05D006752 ORTHO05D008597 6.3e-31 139.4 186 46.2
CSS0016306 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 4.2e-27 126.7 121 53.7
CSS0032277 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 7.2e-27 125.9 175 46.3
Zm00001eb336920 Zea mays HOM05D006752 ORTHO05D008597 4.6e-26 123.2 236 41.9
Sc08g0007040 Simmondsia chinensis HOM05D006752 ORTHO05D008597 3.0e-25 120.6 143 48.3
MD02G1041600 Malus domestica HOM05D006752 ORTHO05D008597 8.8e-25 119.0 86 67.4
MD00G1027300 Malus domestica HOM05D006752 ORTHO05D008597 1.7e-20 104.8 70 72.9
MD02G1038900 Malus domestica HOM05D006752 ORTHO05D008597 1.9e-19 101.3 112 52.7
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 8.8e-17 92.4 390 26.9
CBR_g41660 Chara braunii HOM05D001740 ORTHO05D001468 1.5e-16 91.7 232 28.4
MD02G1041500 Malus domestica HOM05D006752 ORTHO05D008597 5.9e-13 79.7 70 57.1
MD02G1040800 Malus domestica HOM05D006752 ORTHO05D008597 2.9e-12 77.4 77 49.4
Ca_21022_v3 Cicer arietinum L. HOM05D003122 ORTHO05D012218 5.0e-12 76.6 58 65.5
MCO09G826 Micromonas commoda HOM05D006752 ORTHO05D008597 1.9e-11 74.7 179 32.4
MD11G1046200 Malus domestica HOM05D006752 ORTHO05D008597 3.6e-10 70.5 64 56.2
HanXRQChr09g0273461 Helianthus annuus HOM05D005415 ORTHO05D006242 1.8e-09 68.2 122 32.8
Mapoly0147s0014 Marchantia polymorpha HOM05D005415 ORTHO05D006242 2.3e-09 67.8 122 32.8
MD02G1041100 Malus domestica HOM05D006752 ORTHO05D008597 3.9e-09 67.0 102 40.2
Lsat_1_v5_gn_4_82521 Lactuca sativa HOM05D005415 ORTHO05D006242 2.6e-08 64.3 133 32.3
Aqoxy3G01618 Aquilegia oxysepala HOM05D005415 ORTHO05D006242 4.4e-08 63.5 124 32.3
TAR629G2415 Trochodendron aralioides HOM05D005415 ORTHO05D006242 5.7e-08 63.2 123 34.1
SMO173G0006 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.3e-07 62.0 129 34.1
MD02G1040400 Malus domestica HOM05D006752 ORTHO05D008597 1.7e-07 61.6 66 47.0
Potri.015G100200 Populus trichocarpa HOM05D005415 ORTHO05D006242 1.7e-07 61.6 124 33.1
SMO173G0041 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.7e-07 61.6 129 33.3
PSO017G0412 Papaver somniferum HOM05D005415 ORTHO05D006242 2.8e-07 60.8 124 32.3
SMO146G0239 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 2.8e-07 60.8 129 33.3
CDE05G0217 Ceratophyllum demersum HOM05D005415 ORTHO05D006242 3.7e-07 60.5 125 32.0
Oeu030666.2 Olea europaea HOM05D005415 ORTHO05D006242 3.7e-07 60.5 123 34.1
PSO478G2612 Papaver somniferum HOM05D005415 ORTHO05D006242 3.7e-07 60.5 124 32.3
PGSC0003DMG400013896 Solanum tuberosum HOM05D005415 ORTHO05D006242 4.8e-07 60.1 124 32.3
SMO146G0204 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 6.3e-07 59.7 224 27.7
Sc10g0010570 Simmondsia chinensis HOM05D005415 ORTHO05D006242 6.3e-07 59.7 152 30.3
CSS0000208 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 8.2e-07 59.3 124 32.3
Gohir.D07G053600 Gossypium hirsutum HOM05D005415 ORTHO05D006242 1.4e-06 58.5 124 32.3
Sopen12g001850 Solanum pennellii HOM05D005415 ORTHO05D006242 1.4e-06 58.5 159 28.9
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 1.8e-06 58.2 130 28.5
MD02G1040500 Malus domestica HOM05D006752 ORTHO05D008597 1.8e-06 58.2 81 44.4
TWI32G0100 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 1.8e-06 58.2 111 37.8
Solyc12g005900.3 Solanum lycopersicum HOM05D005415 ORTHO05D006242 2.4e-06 57.8 159 28.9
arahy.Tifrunner.gnm1.ann1.NCF6IW Arachis hypogaea HOM05D005415 ORTHO05D006242 3.1e-06 57.4 124 30.6
MD14G1152700 Malus domestica HOM05D005415 ORTHO05D006242 3.1e-06 57.4 122 31.1
unitig_8.g4692 Utricularia gibba HOM05D005415 ORTHO05D006242 3.1e-06 57.4 123 32.5
Aa31LG1G18400 Aethionema arabicum HOM05D005415 ORTHO05D006242 4.1e-06 57.0 125 33.6
arahy.Tifrunner.gnm1.ann1.MQVT4E Arachis hypogaea HOM05D005415 ORTHO05D006242 7.0e-06 56.2 124 29.8
PGR083G0902 Punica granatum HOM05D005415 ORTHO05D006242 9.1e-06 55.8 122 32.0


User provided reference genes

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