Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0071331 Lupinus albus HOM05D007371 ORTHO05D009319 8.0e-32 139.8 71 100.0
Lalb_Chr07g0191781 Lupinus albus HOM05D007371 ORTHO05D009319 1.2e-14 82.8 70 68.6
Glyma.19G081000 Glycine max HOM05D007371 ORTHO05D009319 7.5e-14 80.1 70 65.7
Medtr4g006110 Medicago truncatula HOM05D007371 ORTHO05D009319 6.4e-13 77.0 70 62.9
Medtr5g063410 Medicago truncatula HOM05D007371 ORTHO05D009319 6.4e-13 77.0 70 62.9
Medtr6g042220 Medicago truncatula HOM05D007371 ORTHO05D009319 6.4e-13 77.0 70 62.9
Gohir.1Z049431 Gossypium hirsutum HOM05D007371 ORTHO05D009319 1.1e-12 76.3 70 60.0
Gohir.1Z049679 Gossypium hirsutum HOM05D007371 ORTHO05D009319 1.1e-12 76.3 70 60.0
Gohir.A02G134600 Gossypium hirsutum HOM05D007371 ORTHO05D009319 1.1e-12 76.3 70 60.0
Gohir.D04G175100 Gossypium hirsutum HOM05D007371 ORTHO05D009319 1.1e-12 76.3 70 60.0
Gohir.A09G046246 Gossypium hirsutum HOM05D007371 ORTHO05D009319 1.4e-12 75.9 70 60.0
Gorai.013G109900 Gossypium raimondii HOM05D007371 ORTHO05D009319 2.4e-12 75.1 70 55.7
Medtr7g021710 Medicago truncatula HOM05D007371 ORTHO05D009319 2.4e-12 75.1 70 61.4
DCAR_032539 Daucus carota HOM05D007371 ORTHO05D009319 5.4e-12 73.9 70 60.0
Potri.013G075100 Populus trichocarpa HOM05D007371 ORTHO05D009319 9.2e-12 73.2 70 57.1
Gohir.D12G089301 Gossypium hirsutum HOM05D007371 ORTHO05D009319 1.2e-11 72.8 70 58.6
Nn064s42209 Nelumbo nucifera HOM05D007371 ORTHO05D009319 1.6e-11 72.4 70 58.6
PGR111G0032 Punica granatum HOM05D007371 ORTHO05D009319 1.6e-11 72.4 70 60.0
RcHm_v2.0_Chr5g0017201 Rosa chinensis HOM05D007371 ORTHO05D009319 2.7e-11 71.6 70 58.6
RcHm_v2.0_CPg0502761 Rosa chinensis HOM05D007371 ORTHO05D009319 2.7e-11 71.6 70 58.6
AL9U11956 Arabidopsis lyrata HOM05D007371 ORTHO05D009319 4.6e-11 70.9 69 59.4
ATCG01080 Arabidopsis thaliana HOM05D007371 ORTHO05D009319 4.6e-11 70.9 69 59.4
PSO548G0046 Papaver somniferum HOM05D007371 ORTHO05D009319 4.6e-11 70.9 70 57.1
RcHm_v2.0_Chr5g0043021 Rosa chinensis HOM05D007371 ORTHO05D009319 6.0e-11 70.5 70 57.1
SalBow1G7973 Salvia bowleyana HOM05D007371 ORTHO05D009319 6.0e-11 70.5 70 57.1
Migut.D01251 Erythranthe guttata HOM05D007371 ORTHO05D009319 1.0e-10 69.7 70 57.1
Nn1g08633 Nelumbo nucifera HOM05D007371 ORTHO05D009319 1.0e-10 69.7 70 55.7
C09p24650 Brassica napus HOM05D007371 ORTHO05D009319 3.0e-10 68.2 69 58.0
C09p40180 Brassica napus HOM05D007371 ORTHO05D009319 3.0e-10 68.2 69 58.0
BolC2t10597H Brassica oleracea HOM05D007371 ORTHO05D009319 3.0e-10 68.2 69 58.0
BolSC29t60507H Brassica oleracea HOM05D007371 ORTHO05D009319 3.0e-10 68.2 69 58.0
BolSC29t60547H Brassica oleracea HOM05D007371 ORTHO05D009319 3.0e-10 68.2 69 58.0
BolSC29t60622H Brassica oleracea HOM05D007371 ORTHO05D009319 3.0e-10 68.2 69 58.0
BolSC35t60691H Brassica oleracea HOM05D007371 ORTHO05D009319 3.0e-10 68.2 69 58.0
BolSC37t60794H Brassica oleracea HOM05D007371 ORTHO05D009319 3.0e-10 68.2 69 58.0
BolSC45t60908H Brassica oleracea HOM05D007371 ORTHO05D009319 3.0e-10 68.2 69 58.0
BolSC46t60957H Brassica oleracea HOM05D007371 ORTHO05D009319 3.0e-10 68.2 69 58.0
BolSC47t61064H Brassica oleracea HOM05D007371 ORTHO05D009319 3.0e-10 68.2 69 58.0
BolSC56t61236H Brassica oleracea HOM05D007371 ORTHO05D009319 3.0e-10 68.2 69 58.0
BraA10t43431Z Brassica rapa HOM05D007371 ORTHO05D009319 3.0e-10 68.2 69 58.0
BraSC103t45430Z Brassica rapa HOM05D007371 ORTHO05D009319 3.0e-10 68.2 69 58.0
BraSC179t45773Z Brassica rapa HOM05D007371 ORTHO05D009319 3.0e-10 68.2 69 58.0
BraSC59t46552Z Brassica rapa HOM05D007371 ORTHO05D009319 3.0e-10 68.2 69 58.0
Solyc03g013600.1 Solanum lycopersicum HOM05D007371 ORTHO05D009319 3.0e-10 68.2 70 57.1
TAR625G0296 Trochodendron aralioides HOM05D007371 ORTHO05D009319 3.0e-10 68.2 70 57.1
CARHR282450 Cardamine hirsuta HOM05D007371 ORTHO05D009319 3.9e-10 67.8 69 58.0
Nn3g20215 Nelumbo nucifera HOM05D007371 ORTHO05D009319 5.1e-10 67.4 70 55.7
CAN.G1526.6 Capsicum annuum HOM05D007371 ORTHO05D009319 6.6e-10 67.0 70 55.7
CAN.G278.2 Capsicum annuum HOM05D007371 ORTHO05D009319 6.6e-10 67.0 70 55.7
CAN.G939.5 Capsicum annuum HOM05D007371 ORTHO05D009319 6.6e-10 67.0 70 55.7
HanXRQChr00c0289g0573141 Helianthus annuus HOM05D007371 ORTHO05D009319 6.6e-10 67.0 70 54.3
HanXRQChr02g0059721 Helianthus annuus HOM05D007371 ORTHO05D009319 6.6e-10 67.0 70 54.3
HanXRQChr09g0258501 Helianthus annuus HOM05D007371 ORTHO05D009319 6.6e-10 67.0 70 54.3
HanXRQChr15g0465431 Helianthus annuus HOM05D007371 ORTHO05D009319 6.6e-10 67.0 70 54.3
HanXRQChr15g0465461 Helianthus annuus HOM05D007371 ORTHO05D009319 6.6e-10 67.0 70 54.3
HanXRQChr17g0569721 Helianthus annuus HOM05D007371 ORTHO05D009319 6.6e-10 67.0 70 54.3
HanXRQChr17g0569751 Helianthus annuus HOM05D007371 ORTHO05D009319 6.6e-10 67.0 70 54.3
HanXRQCPg0580341 Helianthus annuus HOM05D007371 ORTHO05D009319 6.6e-10 67.0 70 54.3
Peaxi162Scf00338g00628 Petunia axillaris HOM05D007371 ORTHO05D009319 8.6e-10 66.6 67 58.2
Lj2P1238T112 Lonicera japonica HOM05D007371 ORTHO05D009319 1.9e-09 65.5 70 55.7
Lj9P89T22 Lonicera japonica HOM05D007371 ORTHO05D009319 1.9e-09 65.5 70 55.7
Lju5009P0T52 Lonicera japonica HOM05D007371 ORTHO05D009319 1.9e-09 65.5 70 55.7
Solyc02g011770.1 Solanum lycopersicum HOM05D007371 ORTHO05D009319 1.9e-09 65.5 70 55.7
CAN.G262.7 Capsicum annuum HOM05D007371 ORTHO05D009319 4.3e-09 64.3 70 54.3
HanXRQChr01g0000251 Helianthus annuus HOM05D007371 ORTHO05D009319 1.2e-08 62.8 60 60.0
Solyc07g026910.3 Solanum lycopersicum HOM05D007371 ORTHO05D009319 2.1e-08 62.0 70 52.9
arahy.Tifrunner.gnm1.ann1.5E4H9C Arachis hypogaea HOM05D007371 ORTHO05D009319 2.8e-08 61.6 47 70.2
BolC9t56922H Brassica oleracea HOM05D007371 ORTHO05D009319 4.7e-08 60.8 69 53.6
Hma1.2p1_0656F.1_g196806 Hydrangea macrophylla HOM05D007371 ORTHO05D009319 4.7e-08 60.8 47 72.3
BraSC138t45534Z Brassica rapa HOM05D007371 ORTHO05D009319 8.1e-08 60.1 61 60.7
BraSC143t45659Z Brassica rapa HOM05D007371 ORTHO05D009319 8.1e-08 60.1 61 60.7
CAN.G256.22 Capsicum annuum HOM05D007371 ORTHO05D009319 8.1e-08 60.1 70 54.3
CAN.G965.5 Capsicum annuum HOM05D007371 ORTHO05D009319 8.1e-08 60.1 70 51.4
BolSC49t61144H Brassica oleracea HOM05D007371 ORTHO05D009319 1.1e-07 59.7 61 59.0
C02p24280 Brassica napus HOM05D007371 ORTHO05D009319 2.6e-06 55.1 69 49.3
Gohir.D06G133700 Gossypium hirsutum HOM05D007371 ORTHO05D009319 3.4e-06 54.7 53 50.9
BolC2t10612H Brassica oleracea HOM05D007371 ORTHO05D009319 9.9e-06 53.1 41 75.6


User provided reference genes

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