Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 6.7e-102 374.0 187 100.0
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 6.7e-86 320.9 187 86.1
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 1.5e-85 319.7 186 86.0
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 1.6e-84 316.2 182 85.2
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 2.8e-84 315.5 187 84.5
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 6.3e-84 314.3 176 86.9
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 6.9e-83 310.8 187 84.0
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 1.1e-80 303.5 187 82.4
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 2.1e-79 299.3 192 81.2
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 1.2e-74 283.5 170 83.5
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 1.0e-73 280.4 184 75.0
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 1.3e-73 280.0 179 77.7
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 2.9e-73 278.9 173 78.6
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 1.1e-72 276.9 168 81.0
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 1.4e-72 276.6 170 79.4
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 3.2e-72 275.4 179 77.7
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 9.4e-72 273.9 251 62.2
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 9.4e-72 273.9 169 79.9
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 2.7e-71 272.3 169 79.3
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 6.1e-71 271.2 179 74.3
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 1.4e-70 270.0 176 75.0
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 1.8e-70 269.6 179 76.5
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 1.8e-70 269.6 183 77.6
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 2.3e-70 269.2 174 75.3
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 8.8e-70 267.3 169 76.9
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 8.8e-70 267.3 182 73.1
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 1.1e-69 266.9 169 76.9
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 2.6e-69 265.8 181 72.9
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 3.3e-69 265.4 171 76.6
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 3.3e-69 265.4 169 76.3
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 4.4e-69 265.0 172 74.4
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 1.3e-68 263.5 180 73.9
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 2.2e-68 262.7 159 81.1
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 2.8e-68 262.3 179 74.3
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 1.1e-67 260.4 177 75.1
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 1.8e-67 259.6 176 75.6
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 1.8e-67 259.6 172 74.4
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 2.4e-67 259.2 170 74.7
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 3.1e-67 258.8 168 75.0
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 4.1e-67 258.5 189 70.9
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 4.1e-67 258.5 183 71.6
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 9.1e-67 257.3 170 73.5
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 2.0e-66 256.1 173 72.3
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 5.9e-66 254.6 182 69.2
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 2.9e-65 252.3 181 70.7
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 6.5e-65 251.1 179 68.7
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 1.9e-64 249.6 204 63.7
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 3.2e-64 248.8 176 69.9
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 5.5e-64 248.1 175 69.1
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 7.2e-64 247.7 163 76.1
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 9.4e-64 247.3 179 69.8
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 8.0e-63 244.2 180 68.3
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 8.0e-63 244.2 171 73.7
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 6.7e-62 241.1 167 73.1
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 1.1e-61 240.4 168 69.6
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.3e-61 238.8 166 71.7
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 2.2e-60 236.1 181 64.1
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 8.2e-60 234.2 192 64.1
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 2.4e-59 232.6 169 66.9
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 5.3e-59 231.5 176 67.6
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 9.1e-59 230.7 176 67.0
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 1.2e-58 230.3 179 68.2
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 2.6e-58 229.2 176 67.0
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 2.6e-58 229.2 176 67.0
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 3.5e-58 228.8 171 64.9
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 5.9e-58 228.0 171 64.9
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 7.7e-58 227.6 165 69.1
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.5e-56 223.4 171 67.3
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 5.5e-56 221.5 176 67.6
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.2e-55 220.3 159 69.8
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 1.0e-54 217.2 141 77.3
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 1.0e-54 217.2 163 68.7
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 1.8e-54 216.5 133 80.5
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.6e-53 212.6 157 68.2
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 3.4e-53 212.2 127 84.3
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 7.5e-53 211.1 169 65.7
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 9.8e-53 210.7 173 61.8
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 2.2e-52 209.5 187 59.4
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 1.4e-51 206.8 137 75.2
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 9.1e-51 204.1 145 67.6
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 1.6e-50 203.4 168 61.9
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 3.5e-50 202.2 169 63.3
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 4.5e-50 201.8 179 55.3
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 7.7e-50 201.1 127 78.7
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 6.5e-49 198.0 179 54.7
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 1.1e-48 197.2 157 59.9
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 3.2e-48 195.7 184 53.8
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 2.3e-46 189.5 145 64.8
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 4.0e-46 188.7 171 55.0
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 8.8e-46 187.6 171 56.1
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 8.8e-46 187.6 128 71.9
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 1.2e-45 187.2 180 53.3
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 1.5e-45 186.8 171 55.6
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 2.6e-45 186.0 175 53.7
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 7.5e-45 184.5 171 55.0
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 6.3e-44 181.4 122 73.8
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 1.4e-43 180.3 200 54.0
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 1.8e-43 179.9 124 69.4
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 2.4e-43 179.5 174 53.4
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 3.1e-43 179.1 169 54.4
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 5.9e-42 174.9 175 53.1
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 5.9e-42 174.9 129 66.7
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 2.3e-41 172.9 109 78.0
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 2.9e-41 172.6 169 52.7
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 3.8e-41 172.2 169 51.5
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 5.0e-41 171.8 169 52.7
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 1.9e-40 169.9 175 52.0
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 5.6e-40 168.3 134 65.7
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 1.2e-39 167.2 169 49.1
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 1.2e-39 167.2 169 49.1
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 5.2e-38 161.8 164 52.4
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 7.5e-37 157.9 164 51.2
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 5.4e-35 151.8 133 60.2
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 1.2e-34 150.6 126 61.9
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 4.6e-34 148.7 121 60.3
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 1.9e-32 143.3 157 52.9
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 1.2e-31 140.6 181 42.0
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 8.0e-31 137.9 169 44.4
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.0e-30 137.5 116 62.1
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 8.9e-30 134.4 191 41.4
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 1.2e-29 134.0 178 44.4
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 1.5e-29 133.7 136 51.5
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 2.0e-29 133.3 169 43.2
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 4.4e-29 132.1 118 59.3
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 7.5e-29 131.3 187 40.6
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 1.7e-28 130.2 171 43.3
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 6.4e-28 128.3 171 43.3
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 6.4e-28 128.3 171 43.3
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 4.1e-27 125.6 182 39.6
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 7.0e-27 124.8 171 42.7
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 1.2e-26 124.0 168 40.5
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 1.2e-26 124.0 83 74.7
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 2.0e-26 123.2 169 41.4
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 2.9e-20 102.8 134 47.0
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 1.1e-19 100.9 130 44.6
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 1.2e-18 97.4 154 37.7
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 1.7e-17 93.6 53 84.9
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 6.6e-17 91.7 158 32.3
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 1.1e-16 90.9 54 81.5
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 1.5e-16 90.5 58 81.0
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 1.9e-16 90.1 58 81.0
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 2.5e-16 89.7 60 75.0
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.4e-14 84.0 53 77.4
Cc00_g05590 Coffea canephora HOM05D005184 ORTHO05D006222 1.2e-13 80.9 92 48.9
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 1.5e-13 80.5 77 53.2
PRCOL_00005775 Prasinoderma coloniale HOM05D005184 ORTHO05D006222 3.7e-12 75.9 95 45.3
Peaxi162Scf00792g00021 Petunia axillaris HOM05D005184 ORTHO05D006222 1.4e-11 73.9 41 85.4
Cc00_g11840 Coffea canephora HOM05D001087 ORTHO05D006222 1.6e-10 70.5 71 52.1
RcHm_v2.0_Chr4g0444371 Rosa chinensis HOM05D005184 ORTHO05D006222 5.1e-09 65.5 42 69.0
BolC5t28869H Brassica oleracea HOM05D000630 ORTHO05D014858 1.4e-06 57.4 64 45.3


User provided reference genes

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