Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0069771 Lupinus albus HOM05D006000 ORTHO05D007749 0.0e+00 1288.1 640 100.0
Glyma.06G174400 Glycine max HOM05D006000 ORTHO05D007749 7.4e-294 1013.4 650 77.8
Lj1g0007517 Lotus japonicus HOM05D006000 ORTHO05D007749 9.7e-294 1013.1 652 78.5
Glyma.04G191400 Glycine max HOM05D006000 ORTHO05D007749 1.3e-293 1012.7 650 77.4
Phvul.009G170100 Phaseolus vulgaris HOM05D006000 ORTHO05D007749 8.2e-293 1010.0 650 77.1
Ca_16102_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 3.4e-291 1004.6 651 77.6
Ca_30078_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 3.4e-291 1004.6 651 77.6
Psat5g139520 Pisum sativum HOM05D006000 ORTHO05D007749 2.7e-288 995.0 652 75.9
arahy.Tifrunner.gnm1.ann1.9XY5HM Arachis hypogaea HOM05D006000 ORTHO05D007749 3.6e-288 994.6 645 77.4
VMungo1309G2614 Vigna mungo HOM05D006000 ORTHO05D007749 3.9e-287 991.1 650 76.2
Medtr3g075250 Medicago truncatula HOM05D006000 ORTHO05D007749 6.7e-287 990.3 650 76.9
arahy.Tifrunner.gnm1.ann1.1AQ6ST Arachis hypogaea HOM05D006000 ORTHO05D007749 2.6e-286 988.4 625 78.6
TPR.G38611 Trifolium pratense HOM05D006000 ORTHO05D007749 5.9e-259 897.5 683 68.7
Cfa018908 Carpinus fangiana HOM05D006000 ORTHO05D007749 4.3e-249 864.8 642 67.3
MD14G1166100 Malus domestica HOM05D006000 ORTHO05D007749 7.3e-249 864.0 644 67.2
Prupe.5G160400 Prunus persica HOM05D006000 ORTHO05D007749 8.0e-248 860.5 644 66.5
Haze_07292 Corylus avellana HOM05D006000 ORTHO05D007749 2.0e-246 855.9 673 65.1
MD06G1160100 Malus domestica HOM05D006000 ORTHO05D007749 4.1e-244 848.2 645 66.0
GSVIVG01007577001 Vitis vinifera HOM05D006000 ORTHO05D007749 2.0e-243 845.9 648 65.1
FAN18G3028 Fragaria x ananassa HOM05D006000 ORTHO05D007749 6.6e-242 840.9 644 65.5
RcHm_v2.0_Chr7g0191691 Rosa chinensis HOM05D006000 ORTHO05D007749 8.0e-240 833.9 644 65.5
CANSAT80G1864 Cannabis sativa HOM05D006000 ORTHO05D007749 1.2e-238 830.1 646 63.3
QL10p005632 Quercus lobata HOM05D006000 ORTHO05D007749 2.6e-238 828.9 647 64.9
FvH4_5g06990 Fragaria vesca HOM05D006000 ORTHO05D007749 4.4e-238 828.2 625 65.8
FAN08G3509 Fragaria x ananassa HOM05D006000 ORTHO05D007749 4.4e-238 828.2 649 64.6
Gohir.A03G063200 Gossypium hirsutum HOM05D006000 ORTHO05D007749 6.6e-234 814.3 646 62.5
Sed0018918 Sechium edule HOM05D006000 ORTHO05D007749 3.3e-233 812.0 646 63.2
ClCG03G003330 Citrullus lanatus HOM05D006000 ORTHO05D007749 4.3e-233 811.6 644 63.4
CSS0019701 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 5.6e-233 811.2 636 65.3
Manes.06G113400 Manihot esculenta HOM05D006000 ORTHO05D007749 5.6e-233 811.2 643 63.8
CSS0006429 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 1.6e-232 809.7 636 64.9
TWI39G0152 Tripterygium wilfordii HOM05D006000 ORTHO05D007749 1.6e-232 809.7 648 63.6
Gorai.003G108600 Gossypium raimondii HOM05D006000 ORTHO05D007749 4.7e-232 808.1 647 62.3
CsaV3_1G009140 Cucumis sativus L. HOM05D006000 ORTHO05D007749 5.4e-228 794.7 652 61.8
TAR622G0802 Trochodendron aralioides HOM05D006000 ORTHO05D007749 2.1e-227 792.7 651 61.9
FAN04G1552 Fragaria x ananassa HOM05D006000 ORTHO05D007749 3.5e-227 792.0 646 63.0
Lj9C473G6 Lonicera japonica HOM05D006000 ORTHO05D007749 6.0e-227 791.2 650 62.3
Hund05620 Selenicereus undatus HOM05D006000 ORTHO05D007749 7.8e-227 790.8 645 60.8
Ciclev10024180m.g Citrus clementina HOM05D006000 ORTHO05D007749 3.0e-226 788.9 627 63.3
AT3G48380 Arabidopsis thaliana HOM05D006000 ORTHO05D007749 3.3e-225 785.4 636 61.9
EL10Ac7g18048 Beta vulgaris HOM05D006000 ORTHO05D007749 4.3e-225 785.0 648 61.4
AL5G27780 Arabidopsis lyrata HOM05D006000 ORTHO05D007749 5.6e-225 784.6 639 62.3
CARHR157150 Cardamine hirsuta HOM05D006000 ORTHO05D007749 7.3e-225 784.3 646 61.6
Thhalv10010185m.g Eutrema salsugineum HOM05D006000 ORTHO05D007749 2.1e-224 782.7 650 60.8
THA.LOC104818202 Tarenaya hassleriana HOM05D006000 ORTHO05D007749 3.6e-224 781.9 644 61.6
BcaB01g00818 Brassica carinata HOM05D006000 ORTHO05D007749 5.2e-223 778.1 646 61.5
BcaC07g39322 Brassica carinata HOM05D006000 ORTHO05D007749 6.8e-223 777.7 640 61.1
Sp5g13670 Schrenkiella parvula HOM05D006000 ORTHO05D007749 6.8e-223 777.7 640 61.7
Carub.0005s1454 Capsella rubella HOM05D006000 ORTHO05D007749 2.0e-222 776.2 638 61.4
C08p23370 Brassica napus HOM05D006000 ORTHO05D007749 1.7e-221 773.1 641 61.0
CiPaw.12G034200 Carya illinoinensis HOM05D006000 ORTHO05D007749 2.9e-221 772.3 538 69.1
MELO3C002321.2 Cucumis melo HOM05D006000 ORTHO05D007749 3.8e-221 771.9 650 61.2
Aa31LG4G16970 Aethionema arabicum HOM05D006000 ORTHO05D007749 1.1e-220 770.4 638 60.5
Migut.D02037 Erythranthe guttata HOM05D006000 ORTHO05D007749 4.2e-220 768.5 632 63.1
Cc04_g10700 Coffea canephora HOM05D006000 ORTHO05D007749 1.2e-219 766.9 654 60.4
AUR62001257 Chenopodium quinoa HOM05D006000 ORTHO05D007749 2.1e-219 766.1 648 61.3
Thecc.03G120400 Theobroma cacao HOM05D006000 ORTHO05D007749 3.5e-219 765.4 646 60.2
Eucgr.B00167 Eucalyptus grandis HOM05D006000 ORTHO05D007749 7.8e-219 764.2 643 60.8
BolC8t49966H Brassica oleracea HOM05D006000 ORTHO05D007749 3.0e-218 762.3 652 59.8
A06p19300 Brassica napus HOM05D006000 ORTHO05D007749 6.6e-218 761.1 641 59.9
Oeu053502.2 Olea europaea HOM05D006000 ORTHO05D007749 4.3e-217 758.4 632 63.3
Sc10g0010320 Simmondsia chinensis HOM05D006000 ORTHO05D007749 4.8e-216 755.0 652 58.9
Gohir.D03G103100 Gossypium hirsutum HOM05D006000 ORTHO05D007749 6.2e-216 754.6 613 61.7
PGSC0003DMG400015231 Solanum tuberosum HOM05D006000 ORTHO05D007749 6.2e-216 754.6 627 61.1
vmacro16696 Vaccinium macrocarpon HOM05D006000 ORTHO05D007749 8.1e-216 754.2 642 60.4
BraA06t25013Z Brassica rapa HOM05D006000 ORTHO05D007749 3.1e-215 752.3 651 58.7
Rhsim12G0171000 Rhododendron simsii HOM05D006000 ORTHO05D007749 6.9e-215 751.1 658 60.2
Nitab4.5_0001360g0160 Nicotiana tabacum HOM05D006000 ORTHO05D007749 1.2e-214 750.4 653 58.7
Lsat_1_v5_gn_5_13060 Lactuca sativa HOM05D006000 ORTHO05D007749 4.4e-214 748.4 654 60.2
MSTRG.4336 Avicennia marina HOM05D006000 ORTHO05D007749 1.3e-213 746.9 631 61.0
Sopen03g030780 Solanum pennellii HOM05D006000 ORTHO05D007749 1.7e-213 746.5 627 61.1
Sabra15G0111200 Salix brachista HOM05D006000 ORTHO05D007749 8.4e-213 744.2 619 62.5
Nitab4.5_0006717g0030 Nicotiana tabacum HOM05D006000 ORTHO05D007749 1.4e-212 743.4 627 60.1
Solyc03g111660.3 Solanum lycopersicum HOM05D006000 ORTHO05D007749 1.4e-212 743.4 630 60.8
ECA246G4586 Erigeron canadensis HOM05D006000 ORTHO05D007749 9.3e-212 740.7 658 59.7
PSO782G4995 Papaver somniferum HOM05D006000 ORTHO05D007749 1.2e-211 740.3 650 57.7
HanXRQChr05g0156141 Helianthus annuus HOM05D006000 ORTHO05D007749 3.9e-210 735.3 647 60.0
CAN.G472.50 Capsicum annuum HOM05D006000 ORTHO05D007749 6.6e-210 734.6 653 58.8
PGR083G2177 Punica granatum HOM05D006000 ORTHO05D007749 1.5e-209 733.4 651 58.2
Peaxi162Scf00089g00935 Petunia axillaris HOM05D006000 ORTHO05D007749 7.3e-209 731.1 627 59.6
CDE09G0792 Ceratophyllum demersum HOM05D006000 ORTHO05D007749 3.0e-202 709.1 628 57.5
HPP92_027096 Vanilla planifolia HOM05D006000 ORTHO05D007749 3.1e-199 699.1 651 54.4
Ah.15g095430 Amaranthus hybridus HOM05D006000 ORTHO05D007749 1.0e-197 694.1 650 56.5
Os12g0285500 Oryza sativa ssp. japonica HOM05D006000 ORTHO05D007749 1.0e-197 694.1 639 56.0
ATR0824G112 Amborella trichopoda HOM05D006000 ORTHO05D007749 8.2e-192 674.5 646 54.0
HPP92_021434 Vanilla planifolia HOM05D006000 ORTHO05D007749 3.2e-180 636.0 590 54.1
Nn4g22511 Nelumbo nucifera HOM05D006000 ORTHO05D007749 5.3e-175 618.6 574 55.2
Zm00001eb133430 Zea mays HOM05D006000 ORTHO05D007749 2.5e-172 609.8 657 50.8
Dinv11120 Davidia involucrata HOM05D006000 ORTHO05D007749 1.1e-167 594.3 486 61.7
Actinidia08849 Actinidia chinensis HOM05D006000 ORTHO05D007749 9.4e-164 581.3 468 62.8
Actinidia36773 Actinidia chinensis HOM05D006000 ORTHO05D007749 1.2e-153 547.7 577 54.1
Atru.chr9.985 Acer truncatum HOM05D006000 ORTHO05D007749 2.2e-152 543.5 507 56.0
SGA_v2.0_scaffold7G04178 Striga asiatica HOM05D006000 ORTHO05D007749 3.6e-147 526.2 637 48.2
Dinv12561 Davidia involucrata HOM05D006000 ORTHO05D007749 4.9e-144 515.8 591 48.6
Mapoly0004s0201 Marchantia polymorpha HOM05D006000 ORTHO05D007749 8.3e-136 488.4 629 42.8
Potri.015G088200 Populus trichocarpa HOM05D006000 ORTHO05D007749 1.9e-132 477.2 468 55.1
Pp3c6_16550 Physcomitrium patens HOM05D006000 ORTHO05D007749 4.0e-130 469.5 626 43.5
SMO201G0062 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 5.2e-130 469.2 623 44.5
DCAR_016428 Daucus carota HOM05D006000 ORTHO05D007749 7.8e-126 455.3 253 84.2
CBR_g41805 Chara braunii HOM05D006000 ORTHO05D007749 1.5e-113 414.5 386 52.1
arahy.Tifrunner.gnm1.ann1.HVEI7F Arachis hypogaea HOM05D006000 ORTHO05D007749 3.7e-112 409.8 299 71.9
SalBow8G1380 Salvia bowleyana HOM05D006000 ORTHO05D007749 1.1e-108 398.3 528 47.3
AagrBONN_evm.TU.Sc2ySwM_362.2604 Anthoceros agrestis HOM05D006000 ORTHO05D007749 5.4e-95 352.8 629 39.0
Cre03.g197900 Chlamydomonas reinhardtii HOM05D006000 ORTHO05D007749 6.0e-94 349.4 345 51.9
unitig_21.g20435 Utricularia gibba HOM05D006000 ORTHO05D007749 1.3e-91 341.7 178 86.0
unitig_21.g20436 Utricularia gibba HOM05D006000 ORTHO05D007749 4.2e-87 326.6 462 42.2
HPP92_021417 Vanilla planifolia HOM05D006000 ORTHO05D007749 1.0e-80 305.4 197 72.1
DCAR_016429 Daucus carota HOM05D006000 ORTHO05D007749 9.0e-74 282.3 419 41.5
Cpa.g.sc4.40 Carica papaya HOM05D006000 ORTHO05D007749 1.5e-73 281.6 341 45.2
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 1.0e-56 225.7 170 65.9
arahy.Tifrunner.gnm1.ann1.1X7LEL Arachis hypogaea HOM05D000074 ORTHO05D007749 1.7e-56 224.9 503 36.0
SalBow8G5300 Salvia bowleyana HOM05D006000 ORTHO05D007749 2.1e-54 218.0 104 94.2
Cpa.g.sc4.41 Carica papaya HOM05D006000 ORTHO05D007749 3.6e-54 217.2 106 89.6
FvH4_5g06921 Fragaria vesca HOM05D006000 ORTHO05D007749 8.2e-51 206.1 267 42.7
FvH4_5g06950 Fragaria vesca HOM05D006000 ORTHO05D007749 1.4e-37 162.2 214 42.5
FvH4_5g06930 Fragaria vesca HOM05D006000 ORTHO05D007749 2.4e-34 151.4 137 58.4
PRCOL_00005175 Prasinoderma coloniale HOM05D006000 ORTHO05D007749 4.1e-34 150.6 200 40.0
SMO201G0174 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 4.1e-34 150.6 197 44.2
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 1.0e-29 136.0 154 48.7
CAN.G546.38 Capsicum annuum HOM05D006000 ORTHO05D007749 1.3e-27 129.0 86 70.9
SGA_v2.0_scaffold115G32113 Striga asiatica HOM05D005956 ORTHO05D007197 1.2e-25 122.5 58 87.9
FvH4_5g06922 Fragaria vesca HOM05D006000 ORTHO05D007749 3.5e-25 120.9 83 68.7
SMO328G0007 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 5.0e-24 117.1 83 65.1
Nitab4.5_0001094g0140 Nicotiana tabacum HOM05D006000 ORTHO05D007749 4.7e-22 110.5 175 38.3
arahy.Tifrunner.gnm1.ann1.0Z5YS0 Arachis hypogaea HOM05D001248 ORTHO05D007749 2.9e-19 101.3 72 63.9
arahy.Tifrunner.gnm1.ann1.XFG60B Arachis hypogaea HOM05D006000 ORTHO05D007749 4.6e-17 94.0 96 58.3
Lsat_1_v5_gn_4_166800 Lactuca sativa HOM05D006000 ORTHO05D018009 2.3e-16 91.7 79 58.2
Lsat_1_v5_gn_3_61521 Lactuca sativa HOM05D006000 ORTHO05D018009 3.9e-16 90.9 79 58.2
Lsat_1_v5_gn_4_154121 Lactuca sativa HOM05D006000 ORTHO05D018009 5.0e-16 90.5 79 57.0
Lsat_1_v5_gn_2_53660 Lactuca sativa HOM05D003480 ORTHO05D018009 1.9e-15 88.6 79 57.0
Lsat_1_v5_gn_4_114361 Lactuca sativa HOM05D003480 ORTHO05D018009 2.5e-15 88.2 79 55.7
arahy.Tifrunner.gnm1.ann1.L5KNWH Arachis hypogaea HOM05D006000 ORTHO05D007749 3.3e-15 87.8 95 53.7
Lsat_1_v5_gn_6_19961 Lactuca sativa HOM05D003480 ORTHO05D018009 1.6e-14 85.5 79 55.7
CAN.G1014.24 Capsicum annuum HOM05D000846 ORTHO05D028464 1.3e-11 75.9 205 33.2
CAN.G755.4 Capsicum annuum HOM05D006000 ORTHO05D028464 1.9e-10 72.0 93 44.1


User provided reference genes

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