Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0069761 Lupinus albus HOM05D005390 ORTHO05D007086 0.0e+00 1117.8 640 100.0
Glyma.04G191600 Glycine max HOM05D005390 ORTHO05D007086 4.0e-271 937.9 628 79.1
Glyma.06G174300 Glycine max HOM05D005390 ORTHO05D007086 1.4e-268 929.5 628 82.8
Ca_16101_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 4.5e-267 924.5 571 83.7
Ca_30077_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 4.5e-267 924.5 571 83.7
Phvul.009G170000 Phaseolus vulgaris HOM05D005390 ORTHO05D007086 6.5e-266 920.6 638 77.0
Medtr3g075240 Medicago truncatula HOM05D005390 ORTHO05D007086 1.3e-261 906.4 640 76.1
Psat5g139480 Pisum sativum HOM05D005390 ORTHO05D007086 8.3e-261 903.7 615 77.6
Lj1g0026120 Lotus japonicus HOM05D005390 ORTHO05D007086 5.4e-260 901.0 629 80.4
TPR.G38664 Trifolium pratense HOM05D005390 ORTHO05D007086 2.0e-254 882.5 618 75.2
arahy.Tifrunner.gnm1.ann1.EKVH9G Arachis hypogaea HOM05D005390 ORTHO05D007086 4.4e-254 881.3 652 77.8
QL10p005602 Quercus lobata HOM05D005390 ORTHO05D007086 7.3e-241 837.4 632 74.4
Cfa018904 Carpinus fangiana HOM05D005390 ORTHO05D007086 5.8e-238 827.8 635 69.1
CANSAT80G2255 Cannabis sativa HOM05D005390 ORTHO05D007086 4.1e-236 821.6 580 72.4
Thecc.03G120800 Theobroma cacao HOM05D005390 ORTHO05D007086 1.3e-234 816.6 635 71.3
GSVIVG01007574001 Vitis vinifera HOM05D005390 ORTHO05D007086 1.1e-233 813.5 631 71.8
Haze_07289 Corylus avellana HOM05D005390 ORTHO05D007086 7.3e-233 810.8 614 69.5
Manes.06G113700 Manihot esculenta HOM05D005390 ORTHO05D007086 3.4e-230 802.0 622 73.0
Gohir.A12G187300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 5.4e-228 794.7 636 71.2
Gorai.008G204100 Gossypium raimondii HOM05D005390 ORTHO05D007086 5.4e-228 794.7 636 71.1
Gohir.D12G190300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 9.2e-228 793.9 636 71.2
Actinidia19375 Actinidia chinensis HOM05D005390 ORTHO05D007086 1.2e-224 783.5 574 71.1
Duzib205G1771 Durio zibethinus HOM05D005390 ORTHO05D007086 1.2e-224 783.5 633 70.6
Prupe.5G160000 Prunus persica HOM05D005390 ORTHO05D007086 2.8e-224 782.3 637 71.1
Lj9C473T10 Lonicera japonica HOM05D005390 ORTHO05D007086 1.1e-223 780.4 572 70.6
TAR374G1738 Trochodendron aralioides HOM05D005390 ORTHO05D007086 2.4e-223 779.2 625 65.6
Rhsim08G0183100 Rhododendron simsii HOM05D005390 ORTHO05D007086 2.6e-222 775.8 583 69.3
Nn4g22507 Nelumbo nucifera HOM05D005390 ORTHO05D007086 4.4e-222 775.0 628 68.3
ClCG03G003390 Citrullus lanatus HOM05D005390 ORTHO05D007086 3.8e-221 771.9 629 68.5
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 1.2e-219 766.9 577 67.9
TWI09G0451 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 2.7e-219 765.8 625 65.0
CsaV3_1G009190 Cucumis sativus L. HOM05D005390 ORTHO05D007086 1.7e-218 763.1 629 67.4
PGSC0003DMG400027069 Solanum tuberosum HOM05D005390 ORTHO05D007086 1.7e-218 763.1 574 68.6
TWI39G0214 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 1.7e-218 763.1 624 64.7
MD06G1160400 Malus domestica HOM05D005390 ORTHO05D007086 1.5e-217 760.0 635 69.1
EL10Ac7g18053 Beta vulgaris HOM05D005390 ORTHO05D007086 9.6e-217 757.3 660 64.7
Peaxi162Scf00763g00330 Petunia axillaris HOM05D005390 ORTHO05D007086 2.1e-216 756.1 578 68.2
Eucgr.B00166 Eucalyptus grandis HOM05D005390 ORTHO05D007086 2.8e-216 755.7 627 63.6
Solyc06g071850.3 Solanum lycopersicum HOM05D005390 ORTHO05D007086 2.8e-216 755.7 574 68.3
Sopen06g028130 Solanum pennellii HOM05D005390 ORTHO05D007086 1.8e-215 753.1 576 68.1
FAN13G2995 Fragaria x ananassa HOM05D005390 ORTHO05D007086 2.4e-215 752.7 583 67.9
FAN18G2367 Fragaria x ananassa HOM05D005390 ORTHO05D007086 2.4e-215 752.7 588 67.7
Cpa.g.sc4.44 Carica papaya HOM05D005390 ORTHO05D007086 2.0e-214 749.6 633 65.9
Nitab4.5_0014349g0010 Nicotiana tabacum HOM05D005390 ORTHO05D007086 7.6e-214 747.7 574 66.4
RcHm_v2.0_Chr7g0191501 Rosa chinensis HOM05D005390 ORTHO05D007086 1.3e-213 746.9 569 69.9
HanXRQChr09g0272781 Helianthus annuus HOM05D005390 ORTHO05D007086 1.1e-212 743.8 574 67.6
vmacro19255 Vaccinium macrocarpon HOM05D005390 ORTHO05D007086 1.2e-211 740.3 676 59.9
ECA232G3921 Erigeron canadensis HOM05D005390 ORTHO05D007086 4.6e-211 738.4 570 67.2
Nitab4.5_0000003g0930 Nicotiana tabacum HOM05D005390 ORTHO05D007086 7.8e-211 737.6 574 66.0
Dinv38486 Davidia involucrata HOM05D005390 ORTHO05D007086 7.3e-209 731.1 536 70.5
Lsat_1_v5_gn_4_78320 Lactuca sativa HOM05D005390 ORTHO05D007086 6.2e-208 728.0 627 66.2
Hma1.2p1_0983F.1_g244080 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 2.4e-207 726.1 545 69.7
FAN08G1670 Fragaria x ananassa HOM05D005390 ORTHO05D007086 9.0e-207 724.2 586 65.9
Aqoxy3G01354 Aquilegia oxysepala HOM05D005390 ORTHO05D007086 3.4e-206 722.2 632 61.4
DCAR_016426 Daucus carota HOM05D005390 ORTHO05D007086 5.8e-206 721.5 520 70.8
AL8G40290 Arabidopsis lyrata HOM05D005390 ORTHO05D007086 4.9e-205 718.4 626 63.9
COL.COLO4_04551 Corchorus olitorius HOM05D005390 ORTHO05D007086 3.2e-204 715.7 575 67.1
Cc04_g10660 Coffea canephora HOM05D005390 ORTHO05D007086 2.7e-203 712.6 525 68.6
THA.LOC104818200 Tarenaya hassleriana HOM05D005390 ORTHO05D007086 1.8e-202 709.9 624 64.9
Aa31LG1G18770 Aethionema arabicum HOM05D005390 ORTHO05D007086 2.3e-202 709.5 628 63.2
AUR62025748 Chenopodium quinoa HOM05D005390 ORTHO05D007086 8.7e-202 707.6 578 68.5
AUR62001260 Chenopodium quinoa HOM05D005390 ORTHO05D007086 7.4e-201 704.5 632 63.6
Ciclev10019194m.g Citrus clementina HOM05D005390 ORTHO05D007086 2.1e-200 703.0 639 60.4
Carub.0008s2396 Capsella rubella HOM05D005390 ORTHO05D007086 6.2e-200 701.4 626 62.6
MSTRG.11518 Avicennia marina HOM05D005390 ORTHO05D007086 1.4e-199 700.3 570 63.2
Thhalv10003779m.g Eutrema salsugineum HOM05D005390 ORTHO05D007086 1.8e-199 699.9 627 62.7
Oeu011587.1 Olea europaea HOM05D005390 ORTHO05D007086 1.8e-199 699.9 571 63.6
Sp2g26330 Schrenkiella parvula HOM05D005390 ORTHO05D007086 2.4e-199 699.5 626 61.0
Sed0027546 Sechium edule HOM05D005390 ORTHO05D007086 1.1e-196 690.6 521 72.2
PSO017G5335 Papaver somniferum HOM05D005390 ORTHO05D007086 1.4e-196 690.3 635 59.8
PSO478G4661 Papaver somniferum HOM05D005390 ORTHO05D007086 9.3e-196 687.6 635 59.1
Potri.012G092000 Populus trichocarpa HOM05D005390 ORTHO05D007086 9.3e-196 687.6 635 62.7
Sabra12G0066700 Salix brachista HOM05D005390 ORTHO05D007086 3.5e-195 685.6 575 61.9
CAN.G1046.1 Capsicum annuum HOM05D005390 ORTHO05D007086 4.6e-195 685.3 491 69.7
SGA_v2.0_scaffold25G10792 Striga asiatica HOM05D005390 ORTHO05D007086 2.8e-192 676.0 608 58.9
AT5G63200 Arabidopsis thaliana HOM05D005390 ORTHO05D007086 1.4e-191 673.7 626 61.0
Hund05621 Selenicereus undatus HOM05D005390 ORTHO05D007086 3.0e-186 656.0 635 61.4
BolC9t53836H Brassica oleracea HOM05D005390 ORTHO05D007086 1.1e-183 647.5 626 59.1
MELO3C002325.2 Cucumis melo HOM05D005390 ORTHO05D007086 6.9e-183 644.8 654 59.2
C09p09230 Brassica napus HOM05D005390 ORTHO05D007086 1.2e-182 644.0 626 58.8
BraA09t36469Z Brassica rapa HOM05D005390 ORTHO05D007086 7.9e-179 631.3 626 57.8
arahy.Tifrunner.gnm1.ann1.V8X883 Arachis hypogaea HOM05D005390 ORTHO05D007086 1.0e-178 630.9 595 61.5
unitig_22.g5443 Utricularia gibba HOM05D005390 ORTHO05D007086 3.9e-178 629.0 571 55.9
A09p08180 Brassica napus HOM05D005390 ORTHO05D007086 8.8e-178 627.9 626 57.7
ATR0824G019 Amborella trichopoda HOM05D005390 ORTHO05D007086 1.7e-173 613.6 574 56.8
Atru.BG.198.p Acer truncatum HOM05D005390 ORTHO05D007086 1.9e-172 610.1 462 69.3
CSS0013940 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 3.7e-168 595.9 457 67.8
Zm00001eb144210 Zea mays HOM05D005390 ORTHO05D007086 6.1e-163 578.6 572 55.4
SEGI_06673 Sequoiadendron giganteum HOM05D005390 ORTHO05D007086 1.0e-162 577.8 583 54.4
Sc22g0003910 Simmondsia chinensis HOM05D005390 ORTHO05D007086 1.7e-160 570.5 459 65.4
FvH4_5g07030 Fragaria vesca HOM05D005390 ORTHO05D007086 2.6e-158 563.1 468 63.7
Os01g0906600 Oryza sativa ssp. japonica HOM05D005390 ORTHO05D007086 1.5e-156 557.4 612 54.7
Nn1g05493 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.6e-153 546.6 515 59.2
VMungo1309G2389 Vigna mungo HOM05D005390 ORTHO05D007086 4.5e-142 509.2 360 72.5
CiPaw.12G034400 Carya illinoinensis HOM05D005390 ORTHO05D007086 8.3e-136 488.4 378 68.3
HPP92_001962 Vanilla planifolia HOM05D005390 ORTHO05D007086 1.8e-135 487.3 585 48.5
Nn7g37481 Nelumbo nucifera HOM05D005390 ORTHO05D007086 7.3e-132 475.3 393 64.6
Migut.O00224 Erythranthe guttata HOM05D005390 ORTHO05D007086 6.2e-131 472.2 575 48.3
SMO356G0210 Selaginella moellendorffii HOM05D005390 ORTHO05D007086 3.7e-128 463.0 574 44.9
Mapoly0013s0178 Marchantia polymorpha HOM05D005390 ORTHO05D007086 4.9e-128 462.6 577 44.9
AagrBONN_evm.TU.Sc2ySwM_228.344 Anthoceros agrestis HOM05D005390 ORTHO05D007086 2.3e-125 453.8 597 43.9
FAN04G1107 Fragaria x ananassa HOM05D005390 ORTHO05D007086 3.9e-125 453.0 318 72.3
Nn8g39688 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.2e-123 448.0 332 67.8
VMungo1309G0829 Vigna mungo HOM05D005390 ORTHO05D007086 5.4e-111 406.0 269 81.0
SalBow5G1843 Salvia bowleyana HOM05D005390 ORTHO05D007086 1.8e-106 391.0 456 47.8
Oeu053506.1 Olea europaea HOM05D005390 ORTHO05D007086 1.6e-102 377.9 261 70.9
Nn5g27251 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.5e-102 376.7 565 42.8
MBI11_g46067_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 3.5e-86 323.6 291 61.2
Nn8g40909 Nelumbo nucifera HOM05D005390 ORTHO05D007086 6.5e-80 302.8 206 73.3
Nn5g28724 Nelumbo nucifera HOM05D005390 ORTHO05D007086 5.9e-73 279.6 206 68.4
MBI11_g46351_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 3.9e-69 266.9 255 59.6
Nn1g08373 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.4e-66 257.7 174 70.7
Nn2g15275 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.9e-64 250.8 191 66.5
CiPaw.12G034500 Carya illinoinensis HOM05D005390 ORTHO05D007086 1.0e-61 242.3 200 76.0
CDE06G0744 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 1.1e-55 222.2 174 65.5
CsaV3_3G015420 Cucumis sativus L. HOM05D005390 ORTHO05D007086 3.7e-51 207.2 311 40.2
Hma1.2p1_2683F.1_g326880 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 1.2e-46 192.2 172 61.6
CSS0032502 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 2.3e-45 188.0 116 80.2
CSS0049807 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 2.3e-45 188.0 116 80.2
CsaV3_3G015410 Cucumis sativus L. HOM05D005390 ORTHO05D007086 1.5e-44 185.3 253 47.8
Nn8g40618 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.7e-43 180.6 123 69.9
Hma1.2p1_2683F.1_g326890 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 3.5e-41 174.1 138 68.8
CARHR277060 Cardamine hirsuta HOM05D005390 ORTHO05D007086 3.8e-40 170.6 169 65.1
RcHm_v2.0_Chr5g0027631 Rosa chinensis HOM05D005390 ORTHO05D007086 3.0e-37 161.0 168 60.1
Nn1g03252 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.8e-29 135.2 93 72.0
Psat7g117320 Pisum sativum HOM05D005390 ORTHO05D004709 3.4e-28 131.0 89 75.3
CARHR043650 Cardamine hirsuta HOM05D005390 ORTHO05D007086 1.3e-27 129.0 154 51.9
Nn1g06247 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.4e-26 125.6 97 64.9
Nn6g32370 Nelumbo nucifera HOM05D005390 ORTHO05D007086 4.1e-26 124.0 81 70.4
Nn1g06248 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.3e-24 118.2 78 73.1
CAN.G1302.1 Capsicum annuum HOM05D005390 ORTHO05D002902 3.8e-24 117.5 307 29.3
Nn5g26726 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.3e-23 114.4 80 71.2
RcHm_v2.0_Chr5g0027621 Rosa chinensis HOM05D005390 ORTHO05D007086 7.5e-20 103.2 82 64.6
Nn2g14552 Nelumbo nucifera HOM05D005390 ORTHO05D028071 4.9e-19 100.5 63 74.6
CAN.G534.23 Capsicum annuum HOM05D005390 ORTHO05D007086 2.4e-18 98.2 71 60.6
CDE06G2390 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 7.0e-18 96.7 67 70.1
CAN.G755.13 Capsicum annuum HOM05D005390 ORTHO05D007086 2.6e-12 78.2 49 71.4
A06p18430 Brassica napus HOM05D005390 ORTHO05D028071 3.7e-11 74.3 46 69.6
TAR381G0053 Trochodendron aralioides HOM05D000018 ORTHO05D001172 8.3e-11 73.2 86 48.8
A09p53940 Brassica napus HOM05D005390 ORTHO05D028071 1.4e-10 72.4 46 67.4
BraA09t40810Z Brassica rapa HOM05D005390 ORTHO05D028071 1.4e-10 72.4 46 67.4


User provided reference genes

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