Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0068171 Lupinus albus HOM05D036157 ORTHO05D238308 1.6e-23 111.7 50 100.0
Lalb_Chr18g0049391 Lupinus albus HOM05D036157 ORTHO05D237945 3.6e-18 94.0 50 88.0
Lalb_Chr12g0206341 Lupinus albus HOM05D036157 ORTHO05D239835 5.1e-17 90.1 49 85.7
QL03p023467 Quercus lobata HOM05D000287 ORTHO05D009242 8.8e-09 62.8 38 76.3
QL08p043946 Quercus lobata HOM05D000287 ORTHO05D009242 8.8e-09 62.8 38 76.3
Nn3g20964 Nelumbo nucifera HOM05D000287 ORTHO05D009242 1.1e-08 62.4 37 81.1
Ca_06286_v3 Cicer arietinum L. HOM05D000287 ORTHO05D009242 2.6e-08 61.2 38 73.7
Ciclev10031591m.g Citrus clementina HOM05D000287 ORTHO05D009242 2.6e-08 61.2 38 73.7
FvH4_6g38110 Fragaria vesca HOM05D000093 ORTHO05D009242 2.6e-08 61.2 37 75.7
FAN02G0697 Fragaria x ananassa HOM05D000093 ORTHO05D009242 2.6e-08 61.2 37 75.7
FAN14G1677 Fragaria x ananassa HOM05D000287 ORTHO05D009242 2.6e-08 61.2 37 75.7
MD17G1140500 Malus domestica HOM05D000287 ORTHO05D009242 2.6e-08 61.2 47 66.0
Medtr5g091760 Medicago truncatula HOM05D000287 ORTHO05D009242 2.6e-08 61.2 38 73.7
Psat2g014560 Pisum sativum HOM05D000287 ORTHO05D009242 2.6e-08 61.2 38 73.7
Potri.002G060700 Populus trichocarpa HOM05D000093 ORTHO05D009242 2.6e-08 61.2 37 75.7
Prupe.3G171100 Prunus persica HOM05D000287 ORTHO05D009242 2.6e-08 61.2 37 75.7
Sabra02G0049200 Salix brachista HOM05D000287 ORTHO05D009242 2.6e-08 61.2 37 75.7
TPR.G12647 Trifolium pratense HOM05D000287 ORTHO05D009242 2.6e-08 61.2 60 51.7
DCAR_009795 Daucus carota HOM05D000287 ORTHO05D009242 4.4e-08 60.5 38 73.7
Glyma.02G287300 Glycine max HOM05D000287 ORTHO05D009242 4.4e-08 60.5 60 51.7
LjContig00310g0024901 Lotus japonicus HOM05D000287 ORTHO05D009242 4.4e-08 60.5 38 73.7
Phvul.008G191000 Phaseolus vulgaris HOM05D000287 ORTHO05D009242 4.4e-08 60.5 60 51.7
VMungo0647G0977 Vigna mungo HOM05D000287 ORTHO05D009242 4.4e-08 60.5 60 51.7
Atru.chr11.2432 Acer truncatum HOM05D000287 ORTHO05D000319 5.7e-08 60.1 38 71.1
arahy.Tifrunner.gnm1.ann1.G3X0L7 Arachis hypogaea HOM05D000287 ORTHO05D009242 5.7e-08 60.1 38 71.1
arahy.Tifrunner.gnm1.ann1.IP1Y2C Arachis hypogaea HOM05D000287 ORTHO05D009242 5.7e-08 60.1 38 71.1
CANSAT64G0802 Cannabis sativa HOM05D000287 ORTHO05D009242 5.7e-08 60.1 38 73.7
FAN05G5406 Fragaria x ananassa HOM05D000287 ORTHO05D009242 5.7e-08 60.1 37 75.7
Peaxi162Scf00111g00021 Petunia axillaris HOM05D000287 ORTHO05D009242 7.4e-08 59.7 37 75.7
TAR627G0291 Trochodendron aralioides HOM05D000287 ORTHO05D009242 7.4e-08 59.7 37 75.7
RcHm_v2.0_Chr2g0151171 Rosa chinensis HOM05D000287 ORTHO05D009242 9.7e-08 59.3 37 75.7
Actinidia11199 Actinidia chinensis HOM05D000287 ORTHO05D009242 1.3e-07 58.9 36 75.0
CSS0021435 Camellia sinensis var. sinensis HOM05D000093 ORTHO05D009242 1.3e-07 58.9 36 77.8
Hma1.2p1_0888F.1_g232800 Hydrangea macrophylla HOM05D000093 ORTHO05D009242 1.3e-07 58.9 37 70.3
Lalb_Chr10g0106731 Lupinus albus HOM05D000287 ORTHO05D009242 1.3e-07 58.9 37 73.0
CAN.G585.53 Capsicum annuum HOM05D000287 ORTHO05D009242 1.7e-07 58.5 37 70.3
Dinv02999 Davidia involucrata HOM05D000287 ORTHO05D009242 1.7e-07 58.5 37 73.0
Migut.H02094 Erythranthe guttata HOM05D000287 ORTHO05D009242 1.7e-07 58.5 37 70.3
Nitab4.5_0001675g0020 Nicotiana tabacum HOM05D000287 ORTHO05D009242 1.7e-07 58.5 37 70.3
Nitab4.5_0005557g0030 Nicotiana tabacum HOM05D000287 ORTHO05D009242 1.7e-07 58.5 37 70.3
Solyc07g055970.1 Solanum lycopersicum HOM05D000287 ORTHO05D009242 1.7e-07 58.5 37 70.3
Sopen07g029320 Solanum pennellii HOM05D000287 ORTHO05D009242 1.7e-07 58.5 37 70.3
PGSC0003DMG400017297 Solanum tuberosum HOM05D000287 ORTHO05D000319 1.7e-07 58.5 37 70.3
COL.COLO4_33739 Corchorus olitorius HOM05D000287 ORTHO05D009242 2.2e-07 58.2 38 68.4
Oeu026476.1 Olea europaea HOM05D000287 ORTHO05D009242 2.2e-07 58.2 37 70.3
Aqoxy1G01884 Aquilegia oxysepala HOM05D000287 ORTHO05D009242 3.7e-07 57.4 36 75.0
Rhsim06G0118200 Rhododendron simsii HOM05D000287 ORTHO05D009242 3.7e-07 57.4 36 72.2
Manes.02G083900 Manihot esculenta HOM05D000287 ORTHO05D009242 4.8e-07 57.0 38 68.4
TWI59G0916 Tripterygium wilfordii HOM05D000093 ORTHO05D009242 4.8e-07 57.0 38 68.4
Duzib147G0509 Durio zibethinus HOM05D000093 ORTHO05D009242 6.3e-07 56.6 38 65.8
Peaxi162Scf00035g02918 Petunia axillaris HOM05D000287 ORTHO05D009242 6.3e-07 56.6 38 68.4
THA.LOC104803202 Tarenaya hassleriana HOM05D000287 ORTHO05D009242 6.3e-07 56.6 38 65.8
Eucgr.E00840 Eucalyptus grandis HOM05D000287 ORTHO05D009242 8.2e-07 56.2 38 68.4
Lsat_1_v5_gn_5_3260 Lactuca sativa HOM05D000287 ORTHO05D009242 8.2e-07 56.2 38 65.8
Cc05_g09320 Coffea canephora HOM05D000287 ORTHO05D009242 1.1e-06 55.8 38 71.1
PSO541G0093 Papaver somniferum HOM05D000287 ORTHO05D009242 1.1e-06 55.8 37 67.6
PSO675G5389 Papaver somniferum HOM05D000287 ORTHO05D009242 1.1e-06 55.8 37 67.6
Thecc.01G161000 Theobroma cacao HOM05D000287 ORTHO05D009242 1.4e-06 55.5 38 65.8
CsaV3_6G038010 Cucumis sativus L. HOM05D000287 ORTHO05D009242 1.8e-06 55.1 37 67.6
Sed0015129 Sechium edule HOM05D000287 ORTHO05D009242 1.8e-06 55.1 37 64.9
ClCG09G022360 Citrullus lanatus HOM05D000287 ORTHO05D009242 3.1e-06 54.3 37 67.6
Eucgr.A01964 Eucalyptus grandis HOM05D000287 ORTHO05D009242 3.1e-06 54.3 38 63.2
TWI39G1051 Tripterygium wilfordii HOM05D000287 ORTHO05D002423 3.1e-06 54.3 38 57.9
SalBow7G0103 Salvia bowleyana HOM05D000287 ORTHO05D009242 5.3e-06 53.5 37 62.2
Carub.0004s2529 Capsella rubella HOM05D000287 ORTHO05D009242 7.0e-06 53.1 38 63.2
Lsat_1_v5_gn_3_35940 Lactuca sativa HOM05D000093 ORTHO05D009242 7.0e-06 53.1 38 63.2
SEGI_40645 Sequoiadendron giganteum HOM05D000287 ORTHO05D002423 7.0e-06 53.1 60 38.3
COL.COLO4_09649 Corchorus olitorius HOM05D000287 ORTHO05D002423 9.1e-06 52.8 45 51.1
Gohir.A05G378600 Gossypium hirsutum HOM05D000287 ORTHO05D009242 9.1e-06 52.8 38 63.2
Gohir.D04G037000 Gossypium hirsutum HOM05D000287 ORTHO05D009242 9.1e-06 52.8 38 63.2
Gorai.012G041800 Gossypium raimondii HOM05D000287 ORTHO05D009242 9.1e-06 52.8 38 63.2
SGA_v2.0_scaffold4G02115 Striga asiatica HOM05D000287 ORTHO05D000319 9.1e-06 52.8 37 62.2


User provided reference genes

Program Settings