Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0067791 Lupinus albus HOM05D004173 ORTHO05D004885 2.9e-35 151.4 78 100.0
Lalb_Chr23g0272221 Lupinus albus HOM05D004173 ORTHO05D004885 6.1e-25 117.1 77 77.9
Lalb_Chr23g0272201 Lupinus albus HOM05D004173 ORTHO05D004885 7.5e-23 110.2 77 71.4
arahy.Tifrunner.gnm1.ann1.7F477P Arachis hypogaea HOM05D004173 ORTHO05D004885 5.9e-20 100.5 72 70.8
Psat5g068840 Pisum sativum HOM05D004173 ORTHO05D004885 1.0e-19 99.8 76 68.4
Ca_16866_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 1.9e-18 95.5 76 68.4
Ca_29953_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 1.9e-18 95.5 76 68.4
TPR.G1732 Trifolium pratense HOM05D004173 ORTHO05D004885 3.3e-18 94.7 76 63.2
Medtr3g093970 Medicago truncatula HOM05D004173 ORTHO05D004885 5.5e-18 94.0 76 65.8
Glyma.06G142900 Glycine max HOM05D004173 ORTHO05D004885 7.2e-18 93.6 71 69.0
Phvul.009G044100 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 1.0e-16 89.7 71 66.2
VMungo1309G0457 Vigna mungo HOM05D004173 ORTHO05D004885 1.4e-16 89.4 81 63.0
Glyma.04G222500 Glycine max HOM05D004173 ORTHO05D004885 1.8e-16 89.0 71 66.2
Lj1g0005357 Lotus japonicus HOM05D004173 ORTHO05D004885 8.9e-16 86.7 76 60.5
Haze_17356 Corylus avellana HOM05D004173 ORTHO05D004885 1.5e-15 85.9 78 61.5
CiPaw.01G306500 Carya illinoinensis HOM05D004173 ORTHO05D004885 1.7e-14 82.4 75 60.0
THA.LOC104813511 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 6.3e-14 80.5 75 56.0
RcHm_v2.0_Chr1g0372231 Rosa chinensis HOM05D004173 ORTHO05D004885 1.4e-13 79.3 71 59.2
Nitab4.5_0000171g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 3.2e-13 78.2 75 54.7
THA.LOC104803208 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 4.1e-13 77.8 75 54.7
Cfa001210 Carpinus fangiana HOM05D004173 ORTHO05D004885 5.4e-13 77.4 76 56.6
CAN.G100.76 Capsicum annuum HOM05D004173 ORTHO05D004885 9.2e-13 76.6 75 54.7
FAN03G3439 Fragaria x ananassa HOM05D004173 ORTHO05D004885 9.2e-13 76.6 71 57.7
FAN10G3668 Fragaria x ananassa HOM05D004173 ORTHO05D004885 9.2e-13 76.6 71 57.7
Peaxi162Scf00739g00036 Petunia axillaris HOM05D004173 ORTHO05D004885 9.2e-13 76.6 75 54.7
Potri.019G058000 Populus trichocarpa HOM05D004173 ORTHO05D004885 9.2e-13 76.6 75 56.0
BcaC06g32235 Brassica carinata HOM05D004173 ORTHO05D004885 1.2e-12 76.3 75 54.7
C09p71450 Brassica napus HOM05D004173 ORTHO05D004885 1.2e-12 76.3 75 54.7
BolC9t59908H Brassica oleracea HOM05D004173 ORTHO05D004885 1.2e-12 76.3 75 54.7
Peaxi162Scf00167g01213 Petunia axillaris HOM05D004173 ORTHO05D004885 1.2e-12 76.3 71 54.9
Peaxi162Scf00739g00035 Petunia axillaris HOM05D004173 ORTHO05D004885 1.6e-12 75.9 72 54.2
THA.LOC104824365 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 2.0e-12 75.5 72 56.9
CAN.G24.14 Capsicum annuum HOM05D004173 ORTHO05D004885 3.5e-12 74.7 75 52.0
Manes.07G143600 Manihot esculenta HOM05D004173 ORTHO05D004885 4.6e-12 74.3 75 58.7
Nitab4.5_0002846g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 4.6e-12 74.3 73 53.4
CANSAT25G2618 Cannabis sativa HOM05D004173 ORTHO05D004885 5.9e-12 73.9 76 50.0
CARHR166510 Cardamine hirsuta HOM05D004173 ORTHO05D004885 1.0e-11 73.2 75 52.0
THA.LOC104826832 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 1.0e-11 73.2 77 54.5
AL6G15090 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 1.3e-11 72.8 75 52.0
AT5G05250 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 1.3e-11 72.8 75 52.0
Gorai.009G293700 Gossypium raimondii HOM05D004173 ORTHO05D004885 1.3e-11 72.8 75 50.7
Manes.10G001300 Manihot esculenta HOM05D004173 ORTHO05D004885 1.7e-11 72.4 71 59.2
MD01G1167600 Malus domestica HOM05D004173 ORTHO05D004885 2.3e-11 72.0 79 50.6
FvH4_7g25910 Fragaria vesca HOM05D004173 ORTHO05D004885 2.9e-11 71.6 71 53.5
FAN06G1323 Fragaria x ananassa HOM05D004173 ORTHO05D004885 2.9e-11 71.6 71 53.5
Gohir.D05G280200 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.9e-11 71.6 75 52.0
Actinidia07794 Actinidia chinensis HOM05D004173 ORTHO05D004885 3.9e-11 71.2 75 50.7
Actinidia00999 Actinidia chinensis HOM05D004173 ORTHO05D004885 5.0e-11 70.9 74 51.4
A10p30940 Brassica napus HOM05D004173 ORTHO05D004885 5.0e-11 70.9 75 50.7
BraA10t45139Z Brassica rapa HOM05D004173 ORTHO05D004885 5.0e-11 70.9 75 50.7
Manes.07G141000 Manihot esculenta HOM05D004173 ORTHO05D004885 5.0e-11 70.9 75 57.3
Carub.0006s0418 Capsella rubella HOM05D004173 ORTHO05D004885 6.6e-11 70.5 75 49.3
Sp5g06150 Schrenkiella parvula HOM05D004173 ORTHO05D004885 6.6e-11 70.5 75 49.3
CARHR207980 Cardamine hirsuta HOM05D004173 ORTHO05D004885 8.6e-11 70.1 75 50.7
Duzib128G1795 Durio zibethinus HOM05D004173 ORTHO05D004885 8.6e-11 70.1 71 50.7
Thhalv10006215m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 8.6e-11 70.1 75 50.7
Thhalv10014558m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 8.6e-11 70.1 72 54.2
Cpa.g.sc19.59 Carica papaya HOM05D004173 ORTHO05D004885 1.1e-10 69.7 71 56.3
Duzib114G0418 Durio zibethinus HOM05D004173 ORTHO05D004885 1.1e-10 69.7 71 50.7
Prupe.2G264000 Prunus persica HOM05D004173 ORTHO05D004885 1.1e-10 69.7 71 53.5
Aa31LG10G11250 Aethionema arabicum HOM05D004173 ORTHO05D004885 1.5e-10 69.3 71 53.5
Ciclev10032642m.g Citrus clementina HOM05D004173 ORTHO05D004885 1.5e-10 69.3 71 53.5
Gohir.A05G278500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.5e-10 69.3 75 49.3
MD07G1233600 Malus domestica HOM05D004173 ORTHO05D004885 1.5e-10 69.3 76 46.1
AL5G37690 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 1.9e-10 68.9 75 48.0
CSS0045557 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 1.9e-10 68.9 72 51.4
Nitab4.5_0002279g0040 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.9e-10 68.9 71 49.3
Sp6g37580 Schrenkiella parvula HOM05D004173 ORTHO05D004885 1.9e-10 68.9 72 51.4
Aa31LG11G6110 Aethionema arabicum HOM05D004173 ORTHO05D004885 2.5e-10 68.6 76 51.3
A09p49310 Brassica napus HOM05D004173 ORTHO05D004885 2.5e-10 68.6 75 53.3
BraA09t40385Z Brassica rapa HOM05D004173 ORTHO05D004885 2.5e-10 68.6 75 53.3
BcaC07g39948 Brassica carinata HOM05D004173 ORTHO05D004885 3.3e-10 68.2 76 52.6
C08p31680 Brassica napus HOM05D004173 ORTHO05D004885 3.3e-10 68.2 76 52.6
AT3G56360 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 4.3e-10 67.8 75 48.0
Sopen05g030770 Solanum pennellii HOM05D004173 ORTHO05D004885 4.3e-10 67.8 78 44.9
PGSC0003DMG400011642 Solanum tuberosum HOM05D004173 ORTHO05D004885 4.3e-10 67.8 81 42.0
Atru.chr12.182 Acer truncatum HOM05D004173 ORTHO05D004885 7.3e-10 67.0 78 51.3
BolC8t50789H Brassica oleracea HOM05D004173 ORTHO05D004885 7.3e-10 67.0 75 53.3
Migut.F00606 Erythranthe guttata HOM05D004173 ORTHO05D004885 7.3e-10 67.0 72 45.8
Oeu063983.1 Olea europaea HOM05D004173 ORTHO05D004885 7.3e-10 67.0 71 45.1
A04p03290 Brassica napus HOM05D004173 ORTHO05D004885 9.5e-10 66.6 75 46.7
BraA04t16106Z Brassica rapa HOM05D004173 ORTHO05D004885 9.5e-10 66.6 75 46.7
Dinv21845 Davidia involucrata HOM05D004173 ORTHO05D004885 9.5e-10 66.6 71 53.5
Gohir.A05G403100 Gossypium hirsutum HOM05D004173 ORTHO05D004885 9.5e-10 66.6 71 49.3
Gohir.A13G006500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 9.5e-10 66.6 71 46.5
Carub.0005s2314 Capsella rubella HOM05D004173 ORTHO05D004885 1.2e-09 66.2 75 46.7
ClCG11G005670 Citrullus lanatus HOM05D004173 ORTHO05D004885 1.2e-09 66.2 75 46.7
Eucgr.J00114 Eucalyptus grandis HOM05D004173 ORTHO05D004885 2.8e-09 65.1 78 46.2
BcaC07g39950 Brassica carinata HOM05D004173 ORTHO05D004885 3.6e-09 64.7 75 49.3
Rhsim09G0185800 Rhododendron simsii HOM05D004173 ORTHO05D004885 3.6e-09 64.7 71 46.5
Gohir.D13G006700 Gossypium hirsutum HOM05D004173 ORTHO05D004885 4.7e-09 64.3 71 45.1
TWI73G0681 Tripterygium wilfordii HOM05D004173 ORTHO05D004885 4.7e-09 64.3 71 47.9
Dinv34482 Davidia involucrata HOM05D004173 ORTHO05D004885 6.2e-09 63.9 71 47.9
Gorai.012G014700 Gossypium raimondii HOM05D004173 ORTHO05D004885 6.2e-09 63.9 71 47.9
QL08p064831 Quercus lobata HOM05D004173 ORTHO05D004885 6.2e-09 63.9 75 46.7
Sc10g0002990 Simmondsia chinensis HOM05D004173 ORTHO05D004885 6.2e-09 63.9 71 46.5
vmacro09960 Vaccinium macrocarpon HOM05D004173 ORTHO05D004885 6.2e-09 63.9 75 44.0
Thecc.10G181100 Theobroma cacao HOM05D004173 ORTHO05D004885 8.0e-09 63.5 71 47.9
Rhsim10G0215400 Rhododendron simsii HOM05D000820 ORTHO05D016785 1.0e-08 63.2 76 46.1
PGSC0003DMG400016638 Solanum tuberosum HOM05D004173 ORTHO05D004885 1.0e-08 63.2 73 49.3
EL10Ac2g02643 Beta vulgaris HOM05D004173 ORTHO05D004885 1.4e-08 62.8 75 49.3
Gohir.D04G012400 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.4e-08 62.8 71 46.5
BcaB02g08372 Brassica carinata HOM05D004173 ORTHO05D004885 2.3e-08 62.0 75 45.3
Gorai.013G006900 Gossypium raimondii HOM05D004173 ORTHO05D004885 2.3e-08 62.0 71 43.7
PGR044G2104 Punica granatum HOM05D004173 ORTHO05D004885 2.3e-08 62.0 75 49.3
Solyc06g049020.1 Solanum lycopersicum HOM05D004173 ORTHO05D004885 2.3e-08 62.0 72 48.6
Sopen06g015380 Solanum pennellii HOM05D004173 ORTHO05D004885 2.3e-08 62.0 72 48.6
BcaC02g09832 Brassica carinata HOM05D004173 ORTHO05D004885 4.0e-08 61.2 75 45.3
C04p36060 Brassica napus HOM05D004173 ORTHO05D004885 4.0e-08 61.2 75 45.3
BolC4t25192H Brassica oleracea HOM05D004173 ORTHO05D004885 4.0e-08 61.2 75 45.3
Ah.12g064380 Amaranthus hybridus HOM05D004173 ORTHO05D004885 5.2e-08 60.8 75 46.7
AUR62030611 Chenopodium quinoa HOM05D004173 ORTHO05D004885 5.2e-08 60.8 71 49.3
AUR62024933 Chenopodium quinoa HOM05D004173 ORTHO05D004885 6.8e-08 60.5 71 49.3
SGA_v2.0_scaffold60G20889 Striga asiatica HOM05D004173 ORTHO05D004885 6.8e-08 60.5 72 47.2
CAN.G203.54 Capsicum annuum HOM05D004173 ORTHO05D004885 8.9e-08 60.1 78 42.3
CsaV3_6G002310 Cucumis sativus L. HOM05D004173 ORTHO05D004885 1.2e-07 59.7 71 45.1
MSTRG.18054 Avicennia marina HOM05D004173 ORTHO05D004885 2.0e-07 58.9 77 44.2
Sed0028126 Sechium edule HOM05D004173 ORTHO05D004885 2.6e-07 58.5 71 42.3
MELO3C020007.2 Cucumis melo HOM05D004173 ORTHO05D004885 3.4e-07 58.2 71 45.1
CAN.G546.44 Capsicum annuum HOM05D004173 ORTHO05D004885 4.4e-07 57.8 73 42.5
MBI18_g38876_MAGBIO Magnolia biondii HOM05D004173 ORTHO05D004885 4.4e-07 57.8 72 45.8
CSS0041127 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 7.5e-07 57.0 76 40.8
CSS0049649 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 7.5e-07 57.0 76 40.8
TAR365G1150 Trochodendron aralioides HOM05D004173 ORTHO05D004885 7.5e-07 57.0 76 39.5
Oeu025786.2 Olea europaea HOM05D004173 ORTHO05D004885 9.8e-07 56.6 75 40.0
TAR365G0355 Trochodendron aralioides HOM05D004173 ORTHO05D004885 9.8e-07 56.6 76 39.5
HPP92_012755 Vanilla planifolia HOM05D004173 ORTHO05D004885 9.8e-07 56.6 88 37.5
DCAR_014665 Daucus carota HOM05D004173 ORTHO05D004885 1.3e-06 56.2 71 42.3
SalBow3G3840 Salvia bowleyana HOM05D004173 ORTHO05D004885 1.3e-06 56.2 80 42.5
Hma1.2p1_0264F.1_g106180 Hydrangea macrophylla HOM05D004173 ORTHO05D004885 1.7e-06 55.8 76 40.8
Cc10_g16360 Coffea canephora HOM05D004173 ORTHO05D004885 2.2e-06 55.5 76 38.2
Dinv05055 Davidia involucrata HOM05D004173 ORTHO05D004885 2.2e-06 55.5 75 44.0
PSO421G0661 Papaver somniferum HOM05D004173 ORTHO05D004885 3.7e-06 54.7 89 42.7
Lsat_1_v5_gn_8_11461 Lactuca sativa HOM05D004173 ORTHO05D004885 6.4e-06 53.9 72 48.6
HanXRQChr08g0221561 Helianthus annuus HOM05D004173 ORTHO05D004885 8.3e-06 53.5 72 47.2


User provided reference genes

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