Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0067711 Lupinus albus HOM05D007683 ORTHO05D009703 8.7e-84 313.5 153 100.0
Glyma.06G141600 Glycine max HOM05D007683 ORTHO05D009703 7.8e-32 141.0 168 50.6
Glyma.14G186400 Glycine max HOM05D007683 ORTHO05D009703 1.9e-30 136.3 139 56.8
Glyma.02G219100 Glycine max HOM05D007683 ORTHO05D009703 3.3e-30 135.6 142 54.9
Phvul.008G186200 Phaseolus vulgaris HOM05D007683 ORTHO05D009703 2.0e-27 126.3 156 51.3
LjContig00408g0002016 Lotus japonicus HOM05D007683 ORTHO05D009703 6.4e-26 121.3 142 50.7
Phvul.009G042800 Phaseolus vulgaris HOM05D007683 ORTHO05D009703 1.2e-24 117.1 122 52.5
Psat2g062760 Pisum sativum HOM05D007683 ORTHO05D009703 3.9e-23 112.1 110 54.5
Medtr5g067740 Medicago truncatula HOM05D007683 ORTHO05D009703 4.3e-22 108.6 101 57.4
Lj1g0018746 Lotus japonicus HOM05D007683 ORTHO05D009703 7.3e-22 107.8 167 46.1
VMungo1309G1531 Vigna mungo HOM05D007683 ORTHO05D009703 9.5e-22 107.5 116 48.3
TPR.G7683 Trifolium pratense HOM05D007683 ORTHO05D009703 2.1e-21 106.3 145 49.0
MD07G1235100 Malus domestica HOM05D007683 ORTHO05D009703 5.2e-20 101.7 126 50.8
Prupe.2G265400 Prunus persica HOM05D007683 ORTHO05D009703 2.2e-18 96.3 121 49.6
Gohir.D10G184400 Gossypium hirsutum HOM05D007683 ORTHO05D009703 2.9e-18 95.9 88 60.2
Gorai.011G206600 Gossypium raimondii HOM05D007683 ORTHO05D009703 2.9e-18 95.9 88 60.2
COL.COLO4_19470 Corchorus olitorius HOM05D007683 ORTHO05D009703 3.7e-18 95.5 85 63.5
MD01G1169200 Malus domestica HOM05D007683 ORTHO05D009703 4.9e-18 95.1 116 50.9
Thecc.10G184800 Theobroma cacao HOM05D007683 ORTHO05D009703 8.3e-18 94.4 85 63.5
Gohir.A10G177800 Gossypium hirsutum HOM05D007683 ORTHO05D009703 1.1e-17 94.0 88 59.1
Lj6g0012778 Lotus japonicus HOM05D007683 ORTHO05D009703 1.1e-17 94.0 177 41.8
Duzib106G0215 Durio zibethinus HOM05D007683 ORTHO05D009703 3.2e-17 92.4 73 68.5
Nitab4.5_0006356g0030 Nicotiana tabacum HOM05D007683 ORTHO05D009703 3.2e-17 92.4 65 72.3
Potri.013G090200 Populus trichocarpa HOM05D007683 ORTHO05D009703 3.2e-17 92.4 111 48.6
CANSAT56G2075 Cannabis sativa HOM05D007683 ORTHO05D009703 4.1e-17 92.0 153 40.5
FAN01G0748 Fragaria x ananassa HOM05D007683 ORTHO05D009703 4.1e-17 92.0 81 64.2
FAN03G1207 Fragaria x ananassa HOM05D007683 ORTHO05D009703 5.4e-17 91.7 79 64.6
Ciclev10033031m.g Citrus clementina HOM05D007683 ORTHO05D009703 7.1e-17 91.3 79 68.4
Gorai.010G219400 Gossypium raimondii HOM05D007683 ORTHO05D009703 1.2e-16 90.5 86 58.1
FvH4_7g26070 Fragaria vesca HOM05D007683 ORTHO05D009703 1.6e-16 90.1 81 63.0
MSTRG.8877 Avicennia marina HOM05D007683 ORTHO05D009703 2.7e-16 89.4 80 61.2
Gohir.D06G187100 Gossypium hirsutum HOM05D007683 ORTHO05D009703 2.7e-16 89.4 86 57.0
Hma1.2p1_0264F.1_g105970 Hydrangea macrophylla HOM05D007683 ORTHO05D009703 4.6e-16 88.6 139 41.0
Nitab4.5_0000171g0240 Nicotiana tabacum HOM05D007683 ORTHO05D009703 4.6e-16 88.6 66 68.2
Manes.10G003157 Manihot esculenta HOM05D007683 ORTHO05D009703 7.8e-16 87.8 74 59.5
Cfa001197 Carpinus fangiana HOM05D007683 ORTHO05D009703 2.3e-15 86.3 78 61.5
RcHm_v2.0_Chr1g0372481 Rosa chinensis HOM05D007683 ORTHO05D009703 2.3e-15 86.3 81 60.5
TWI73G0272 Tripterygium wilfordii HOM05D007683 ORTHO05D009703 2.3e-15 86.3 109 48.6
Cc02_g05230 Coffea canephora HOM05D007683 ORTHO05D009703 5.1e-15 85.1 89 52.8
Haze_17368 Corylus avellana HOM05D007683 ORTHO05D009703 5.1e-15 85.1 74 64.9
Oeu008103.1 Olea europaea HOM05D007683 ORTHO05D009703 8.6e-15 84.3 81 58.0
Peaxi162Scf00073g10232 Petunia axillaris HOM05D007683 ORTHO05D009703 1.1e-14 84.0 89 55.1
Sabra13G0070100 Salix brachista HOM05D007683 ORTHO05D009703 1.1e-14 84.0 110 49.1
MELO3C020169.2 Cucumis melo HOM05D007683 ORTHO05D009703 3.3e-14 82.4 71 63.4
Dinv21856 Davidia involucrata HOM05D004933 ORTHO05D005465 3.3e-14 82.4 78 56.4
PGSC0003DMG400020609 Solanum tuberosum HOM05D007683 ORTHO05D009703 3.3e-14 82.4 65 67.7
Sed0023040 Sechium edule HOM05D007683 ORTHO05D009703 4.3e-14 82.0 68 64.7
Cpa.g.sc19.42 Carica papaya HOM05D007683 ORTHO05D009703 7.3e-14 81.3 122 45.1
CsaV3_5G011110 Cucumis sativus L. HOM05D007683 ORTHO05D009703 9.5e-14 80.9 67 61.2
PGR044G1007 Punica granatum HOM05D007683 ORTHO05D009703 9.5e-14 80.9 67 67.2
QL08p065063 Quercus lobata HOM05D007683 ORTHO05D009703 1.2e-13 80.5 76 61.8
Atru.chr12.196 Acer truncatum HOM05D007683 ORTHO05D009703 2.1e-13 79.7 65 64.6
ClCG07G005260 Citrullus lanatus HOM05D007683 ORTHO05D009703 2.1e-13 79.7 67 61.2
Eucgr.J00104 Eucalyptus grandis HOM05D007683 ORTHO05D009703 2.1e-13 79.7 86 57.0
TAR633G1265 Trochodendron aralioides HOM05D007683 ORTHO05D009703 2.8e-13 79.3 78 56.4
DCAR_014661 Daucus carota HOM05D007683 ORTHO05D009703 3.6e-13 79.0 67 61.2
VMungo0647G1507 Vigna mungo HOM05D007683 ORTHO05D009703 3.6e-13 79.0 69 60.9
Gohir.A06G180150 Gossypium hirsutum HOM05D007683 ORTHO05D009703 6.2e-13 78.2 56 67.9
Hma1.2p1_1805F.1_g303190 Hydrangea macrophylla HOM05D007683 ORTHO05D009703 6.2e-13 78.2 54 68.5
THA.LOC104823170 Tarenaya hassleriana HOM05D007683 ORTHO05D009703 8.1e-13 77.8 71 54.9
TWI09G1439 Tripterygium wilfordii HOM05D007683 ORTHO05D009703 1.1e-12 77.4 92 54.3
SGA_v2.0_scaffold60G20879 Striga asiatica HOM05D007683 ORTHO05D009703 1.8e-12 76.6 76 57.9
Solyc03g095700.1 Solanum lycopersicum HOM05D007683 ORTHO05D009703 3.1e-12 75.9 78 56.4
Sopen03g025620 Solanum pennellii HOM05D007683 ORTHO05D009703 3.1e-12 75.9 57 70.2
Sed0015955 Sechium edule HOM05D007683 ORTHO05D009703 6.8e-12 74.7 51 68.6
Ah.12g064430 Amaranthus hybridus HOM05D007683 ORTHO05D009703 8.9e-12 74.3 89 51.7
C09p71480 Brassica napus HOM05D007683 ORTHO05D009703 1.5e-11 73.6 65 56.9
Nn2g10270 Nelumbo nucifera HOM05D007683 ORTHO05D009703 1.5e-11 73.6 75 50.7
Rhsim03G0153400 Rhododendron simsii HOM05D007683 ORTHO05D009703 2.0e-11 73.2 81 55.6
Thhalv10014989m.g Eutrema salsugineum HOM05D007683 ORTHO05D009703 2.6e-11 72.8 49 69.4
Sp6g37610 Schrenkiella parvula HOM05D007683 ORTHO05D009703 3.4e-11 72.4 49 65.3
Ah.11g042460 Amaranthus hybridus HOM05D007683 ORTHO05D009703 4.4e-11 72.0 89 49.4
Aa31LG11G6070 Aethionema arabicum HOM05D007683 ORTHO05D009703 5.8e-11 71.6 69 52.2
BcaB05g21726 Brassica carinata HOM05D007683 ORTHO05D009703 7.6e-11 71.2 46 69.6
BcaC06g32231 Brassica carinata HOM05D007683 ORTHO05D009703 7.6e-11 71.2 46 67.4
BolC9t59911H Brassica oleracea HOM05D007683 ORTHO05D009703 1.3e-10 70.5 64 56.2
Migut.F00568 Erythranthe guttata HOM05D007683 ORTHO05D009703 1.7e-10 70.1 44 75.0
AT5G05220 Arabidopsis thaliana HOM05D007683 ORTHO05D009703 2.9e-10 69.3 46 67.4
AL6G15060 Arabidopsis lyrata HOM05D007683 ORTHO05D009703 3.8e-10 68.9 53 60.4
Carub.0006s0415 Capsella rubella HOM05D007683 ORTHO05D009703 6.4e-10 68.2 64 56.2
A10p30970 Brassica napus HOM05D007683 ORTHO05D009703 8.4e-10 67.8 64 54.7
BraA10t45142Z Brassica rapa HOM05D007683 ORTHO05D009703 8.4e-10 67.8 64 54.7
CARHR208020 Cardamine hirsuta HOM05D007683 ORTHO05D009703 1.9e-09 66.6 64 56.2
ATR1127G105 Amborella trichopoda HOM05D007683 ORTHO05D009703 2.7e-08 62.8 77 45.5
MBI15_g36064_MAGBIO Magnolia biondii HOM05D007683 ORTHO05D009703 2.3e-07 59.7 49 61.2
Lsat_1_v5_gn_2_126821 Lactuca sativa HOM05D007683 ORTHO05D009703 3.0e-07 59.3 67 52.2
CDE07G1521 Ceratophyllum demersum HOM05D006969 ORTHO05D008826 3.3e-06 55.8 70 50.0
Zm00001eb015980 Zea mays HOM05D007683 ORTHO05D009703 3.3e-06 55.8 54 55.6
ECA238G0799 Erigeron canadensis HOM05D007683 ORTHO05D009703 7.3e-06 54.7 64 51.6


User provided reference genes

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