Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0067691 Lupinus albus HOM05D005345 ORTHO05D004682 0.0e+00 1239.9 745 100.0
Lalb_Chr08g0239261 Lupinus albus HOM05D005345 ORTHO05D004682 2.6e-165 586.6 504 62.9
VMungo1309G1748 Vigna mungo HOM05D005345 ORTHO05D004682 3.2e-131 473.4 687 45.9
Glyma.06G141400 Glycine max HOM05D005345 ORTHO05D004682 1.0e-129 468.4 637 48.7
Phvul.009G042600 Phaseolus vulgaris HOM05D005345 ORTHO05D004682 7.4e-128 462.2 683 45.5
Lalb_Chr10g0102841 Lupinus albus HOM05D005345 ORTHO05D004682 5.3e-126 456.1 641 44.9
Glyma.02G219400 Glycine max HOM05D005345 ORTHO05D004682 2.0e-125 454.1 660 45.6
Glyma.14G186800 Glycine max HOM05D005345 ORTHO05D004682 9.4e-115 418.7 650 43.7
Lj1g0012895 Lotus japonicus HOM05D005345 ORTHO05D004682 1.3e-111 408.3 659 43.9
LjContig00408g0007312 Lotus japonicus HOM05D005345 ORTHO05D004682 1.2e-109 401.7 632 42.6
arahy.Tifrunner.gnm1.ann1.A39QJ2 Arachis hypogaea HOM05D005345 ORTHO05D004682 1.1e-107 395.2 668 43.1
arahy.Tifrunner.gnm1.ann1.0QV8DZ Arachis hypogaea HOM05D005345 ORTHO05D004682 4.7e-106 389.8 688 42.0
Ca_16857_v3 Cicer arietinum L. HOM05D005345 ORTHO05D004682 1.4e-105 388.3 597 43.2
Ca_29505_v3 Cicer arietinum L. HOM05D005345 ORTHO05D004682 1.4e-105 388.3 597 43.2
Phvul.008G186500 Phaseolus vulgaris HOM05D005345 ORTHO05D004682 4.4e-104 383.3 648 42.1
Psat5g069400 Pisum sativum HOM05D005345 ORTHO05D004682 6.3e-103 379.4 646 40.9
TPR.G13957 Trifolium pratense HOM05D005345 ORTHO05D004682 2.2e-100 370.9 565 44.1
arahy.Tifrunner.gnm1.ann1.E2ZVAX Arachis hypogaea HOM05D005345 ORTHO05D004682 8.5e-100 369.0 508 47.6
arahy.Tifrunner.gnm1.ann1.DZPX8Q Arachis hypogaea HOM05D005345 ORTHO05D004682 4.2e-99 366.7 508 47.4
Medtr3g093780 Medicago truncatula HOM05D005345 ORTHO05D004682 4.0e-97 360.1 497 46.1
Medtr5g068060 Medicago truncatula HOM05D005345 ORTHO05D004682 6.3e-95 352.8 678 38.8
Ca_23243_v3 Cicer arietinum L. HOM05D005345 ORTHO05D004682 9.1e-94 349.0 653 40.4
Psat2g061880 Pisum sativum HOM05D005345 ORTHO05D004682 8.1e-66 256.1 665 33.7
Duzib106G0455 Durio zibethinus HOM05D005345 ORTHO05D004682 8.1e-58 229.6 694 31.7
Haze_17372 Corylus avellana HOM05D005345 ORTHO05D004682 5.2e-57 226.9 635 31.8
Thecc.10G185200 Theobroma cacao HOM05D005345 ORTHO05D004682 5.8e-56 223.4 594 32.0
Dinv21859 Davidia involucrata HOM05D005345 ORTHO05D004682 2.2e-55 221.5 641 29.8
QL08p065100 Quercus lobata HOM05D005345 ORTHO05D004682 1.9e-54 218.4 661 31.6
Manes.10G003400 Manihot esculenta HOM05D005345 ORTHO05D004682 5.3e-49 200.3 665 28.4
COL.COLO4_19477 Corchorus olitorius HOM05D005345 ORTHO05D004682 9.0e-49 199.5 660 30.2
Ciclev10030619m.g Citrus clementina HOM05D005345 ORTHO05D004682 4.9e-47 193.7 641 29.3
Potri.019G061400 Populus trichocarpa HOM05D005345 ORTHO05D004682 1.6e-45 188.7 643 29.9
Prupe.2G265800 Prunus persica HOM05D005345 ORTHO05D004682 3.9e-44 184.1 659 28.5
CiPaw.01G307600 Carya illinoinensis HOM05D005345 ORTHO05D004682 1.9e-43 181.8 572 30.4
Manes.07G142000 Manihot esculenta HOM05D005345 ORTHO05D004682 4.3e-43 180.6 591 29.8
GSVIVG01032655001 Vitis vinifera HOM05D005345 ORTHO05D004682 7.3e-43 179.9 533 29.3
TWI53G1830 Tripterygium wilfordii HOM05D005345 ORTHO05D004682 1.6e-42 178.7 660 29.2
TWI09G1031 Tripterygium wilfordii HOM05D005345 ORTHO05D004682 2.8e-42 177.9 671 28.5
Gohir.A10G177500 Gossypium hirsutum HOM05D005345 ORTHO05D004682 4.8e-42 177.2 619 28.4
MD01G1169800 Malus domestica HOM05D005345 ORTHO05D004682 2.4e-41 174.9 561 29.1
MD07G1235500 Malus domestica HOM05D005345 ORTHO05D004682 5.3e-41 173.7 560 28.6
RcHm_v2.0_Chr1g0372591 Rosa chinensis HOM05D005345 ORTHO05D004682 5.3e-41 173.7 618 29.0
Duzib128G0800 Durio zibethinus HOM05D005345 ORTHO05D004682 6.9e-41 173.3 465 30.3
Nitab4.5_0005979g0010 Nicotiana tabacum HOM05D005345 ORTHO05D004682 9.0e-41 172.9 577 27.0
TPR.G33944 Trifolium pratense HOM05D005345 ORTHO05D004682 1.5e-40 172.2 313 37.4
Nitab4.5_0000171g0310 Nicotiana tabacum HOM05D005345 ORTHO05D004682 2.0e-40 171.8 577 26.2
Cpa.g.sc19.39 Carica papaya HOM05D005345 ORTHO05D004682 2.6e-40 171.4 579 29.0
FAN01G1672 Fragaria x ananassa HOM05D005345 ORTHO05D004682 9.9e-40 169.5 579 28.8
Dinv34499 Davidia involucrata HOM05D005345 ORTHO05D004682 6.4e-39 166.8 604 28.1
CSS0024314 Camellia sinensis var. sinensis HOM05D005345 ORTHO05D004682 3.2e-38 164.5 611 28.6
Sabra19G0075200 Salix brachista HOM05D005345 ORTHO05D004682 3.5e-37 161.0 590 28.5
FAN06G3940 Fragaria x ananassa HOM05D005345 ORTHO05D004682 6.0e-37 160.2 559 27.9
Sopen03g025560 Solanum pennellii HOM05D005345 ORTHO05D004682 7.9e-37 159.8 594 26.9
CANSAT56G0683 Cannabis sativa HOM05D005345 ORTHO05D004682 1.0e-36 159.5 636 28.1
FvH4_7g26160 Fragaria vesca HOM05D005345 ORTHO05D004682 1.8e-36 158.7 561 27.6
FAN10G1366 Fragaria x ananassa HOM05D005345 ORTHO05D004682 2.3e-36 158.3 590 27.6
PGSC0003DMG400022956 Solanum tuberosum HOM05D005345 ORTHO05D004682 5.1e-36 157.1 599 26.0
Peaxi162Scf00073g00227 Petunia axillaris HOM05D005345 ORTHO05D004682 1.1e-35 156.0 602 25.9
Gorai.011G206300 Gossypium raimondii HOM05D005345 ORTHO05D004682 1.9e-35 155.2 461 29.1
Gohir.A05G404400 Gossypium hirsutum HOM05D005345 ORTHO05D004682 5.6e-35 153.7 582 28.7
CAN.G1229.5 Capsicum annuum HOM05D005345 ORTHO05D004682 7.4e-35 153.3 599 25.9
Actinidia07784 Actinidia chinensis HOM05D005345 ORTHO05D004682 2.1e-34 151.8 564 30.1
Solyc03g095610.4 Solanum lycopersicum HOM05D005345 ORTHO05D004682 3.7e-34 151.0 553 26.9
CSS0033913 Camellia sinensis var. sinensis HOM05D005345 ORTHO05D004682 3.1e-33 147.9 606 27.7
ClCG11G005600 Citrullus lanatus HOM05D005345 ORTHO05D004682 1.2e-32 146.0 550 27.1
Actinidia13637 Actinidia chinensis HOM05D005345 ORTHO05D004682 2.6e-32 144.8 625 28.8
Sed0015893 Sechium edule HOM05D005345 ORTHO05D004682 3.4e-32 144.4 530 27.4
Lj1A968T60 Lonicera japonica HOM05D005345 ORTHO05D004682 5.8e-32 143.7 609 25.8
Gohir.D04G011300 Gossypium hirsutum HOM05D005345 ORTHO05D004682 7.6e-32 143.3 585 28.0
TAR633G2169 Trochodendron aralioides HOM05D005345 ORTHO05D004682 1.3e-31 142.5 627 26.5
Gorai.012G013500 Gossypium raimondii HOM05D005345 ORTHO05D004682 3.8e-31 141.0 609 27.4
Atru.chr12.192 Acer truncatum HOM05D005345 ORTHO05D004682 6.4e-31 140.2 559 27.9
CsaV3_6G002400 Cucumis sativus L. HOM05D005345 ORTHO05D004682 3.2e-30 137.9 548 26.5
Sed0004419 Sechium edule HOM05D005345 ORTHO05D004682 4.2e-30 137.5 642 24.9
Nn2g10264 Nelumbo nucifera HOM05D005345 ORTHO05D004682 9.3e-30 136.3 683 27.5
Oeu018746.1 Olea europaea HOM05D005345 ORTHO05D004682 2.1e-29 135.2 636 26.6
Oeu018747.2 Olea europaea HOM05D005345 ORTHO05D004682 2.1e-29 135.2 636 26.6
TAR369G0882 Trochodendron aralioides HOM05D005345 ORTHO05D004682 4.6e-29 134.0 622 26.0
Rhsim03G0153800 Rhododendron simsii HOM05D005345 ORTHO05D004682 1.3e-28 132.5 658 27.1
Lj8C52G7 Lonicera japonica HOM05D005345 ORTHO05D004682 3.0e-28 131.3 568 25.2
Oeu064002.1 Olea europaea HOM05D005345 ORTHO05D004682 2.5e-27 128.3 598 25.4
TAR636G0005 Trochodendron aralioides HOM05D005345 ORTHO05D004682 4.3e-27 127.5 385 30.4
Rhsim09G0186300 Rhododendron simsii HOM05D005345 ORTHO05D004682 5.7e-27 127.1 648 25.9
Eucgr.J00102 Eucalyptus grandis HOM05D005345 ORTHO05D004682 3.7e-26 124.4 645 26.2
vmacro06904 Vaccinium macrocarpon HOM05D005345 ORTHO05D004682 2.4e-25 121.7 594 27.3
vmacro09953 Vaccinium macrocarpon HOM05D005345 ORTHO05D004682 3.1e-25 121.3 511 28.0
MELO3C020021.2 Cucumis melo HOM05D005345 ORTHO05D004682 1.5e-24 119.0 462 26.2
DCAR_009470 Daucus carota HOM05D005345 ORTHO05D004682 1.5e-24 119.0 622 25.1
TAR623G1626 Trochodendron aralioides HOM05D005345 ORTHO05D004682 2.6e-24 118.2 480 26.2
MBI03_g40812_MAGBIO Magnolia biondii HOM05D002045 ORTHO05D002014 1.0e-23 116.3 460 25.2
Oeu006068.1 Olea europaea HOM05D005345 ORTHO05D004682 4.9e-23 114.0 394 27.9
TPR.G33934 Trifolium pratense HOM05D005345 ORTHO05D004682 3.2e-22 111.3 211 39.3
Gohir.A13G007900 Gossypium hirsutum HOM05D005345 ORTHO05D004682 1.2e-21 109.4 401 26.9
Actinidia31637 Actinidia chinensis HOM05D005345 ORTHO05D004682 1.6e-21 109.0 664 26.7
Medtr7g107300 Medicago truncatula HOM05D005345 ORTHO05D004682 6.1e-21 107.1 132 50.8
DCAR_020155 Daucus carota HOM05D005345 ORTHO05D004682 7.9e-21 106.7 578 23.2
Gohir.D13G008100 Gossypium hirsutum HOM05D005345 ORTHO05D004682 7.9e-21 106.7 404 25.5
Psat7g053800 Pisum sativum HOM05D001135 ORTHO05D001005 1.0e-20 106.3 238 38.2
Gorai.013G008500 Gossypium raimondii HOM05D005345 ORTHO05D004682 1.3e-20 105.9 404 25.5
Oeu039387.1 Olea europaea HOM05D005345 ORTHO05D004682 2.5e-19 101.7 585 23.9
ECA238G0953 Erigeron canadensis HOM05D005345 ORTHO05D004682 3.3e-19 101.3 440 27.0
HanXRQChr07g0204951 Helianthus annuus HOM05D005345 ORTHO05D004682 5.7e-19 100.5 370 27.3
DCAR_018044 Daucus carota HOM05D005345 ORTHO05D004682 1.6e-18 99.0 615 23.7
Aqoxy4G03281 Aquilegia oxysepala HOM05D005345 ORTHO05D004682 2.8e-18 98.2 450 24.7
Migut.F00566 Erythranthe guttata HOM05D005345 ORTHO05D004682 3.1e-17 94.7 276 29.0
Cc02_g05190 Coffea canephora HOM05D005345 ORTHO05D004682 6.9e-17 93.6 544 23.5
Nn5g26827 Nelumbo nucifera HOM05D005345 ORTHO05D004682 7.7e-16 90.1 664 23.3
HanXRQChr14g0460501 Helianthus annuus HOM05D005345 ORTHO05D004682 8.5e-15 86.7 395 25.3
Gohir.D10G184100 Gossypium hirsutum HOM05D005345 ORTHO05D004682 1.1e-14 86.3 299 28.4
Psat6g112960 Pisum sativum HOM05D005345 ORTHO05D004682 1.1e-14 86.3 119 47.9
Lsat_1_v5_gn_2_126680 Lactuca sativa HOM05D005345 ORTHO05D004682 1.6e-13 82.4 560 23.9
MSTRG.27252 Avicennia marina HOM05D005345 ORTHO05D004682 4.6e-13 80.9 283 26.9
BraA10t45145Z Brassica rapa HOM05D010812 ORTHO05D004682 6.1e-13 80.5 173 30.1
PGR044G0353 Punica granatum HOM05D005345 ORTHO05D004682 7.9e-13 80.1 492 23.2
PGR142G1797 Punica granatum HOM05D005345 ORTHO05D004682 7.9e-13 80.1 180 31.7
C09p71510 Brassica napus HOM05D010812 ORTHO05D004682 1.0e-12 79.7 173 30.6
A10p31000 Brassica napus HOM05D010812 ORTHO05D004682 5.1e-12 77.4 173 30.1
CDE04G0305 Ceratophyllum demersum HOM05D025459 ORTHO05D004682 6.7e-12 77.0 311 24.1
Eucgr.G03149 Eucalyptus grandis HOM05D005345 ORTHO05D004682 8.8e-12 76.6 175 30.3
THA.LOC104816507 Tarenaya hassleriana HOM05D010812 ORTHO05D004682 1.5e-11 75.9 406 25.9
Sc10g0003070 Simmondsia chinensis HOM05D005345 ORTHO05D004682 2.0e-11 75.5 378 25.7
Hund13436 Selenicereus undatus HOM05D005345 ORTHO05D004682 5.7e-11 73.9 175 29.1
Thhalv10013098m.g Eutrema salsugineum HOM05D010812 ORTHO05D004682 9.7e-11 73.2 219 25.1
AT5G05190 Arabidopsis thaliana HOM05D010812 ORTHO05D004682 1.3e-10 72.8 208 26.9
Aa31LG11G6050 Aethionema arabicum HOM05D010812 ORTHO05D004682 2.2e-10 72.0 221 27.6
BcaC06g32228 Brassica carinata HOM05D010812 ORTHO05D004682 2.2e-10 72.0 80 36.2
SGA_v2.0_scaffold60G20878 Striga asiatica HOM05D005345 ORTHO05D004682 2.8e-10 71.6 583 23.8
BcaB01g05719 Brassica carinata HOM05D010812 ORTHO05D004682 6.3e-10 70.5 50 52.0
Carub.0006s0412 Capsella rubella HOM05D010812 ORTHO05D004682 6.3e-10 70.5 283 24.0
Hund15794 Selenicereus undatus HOM05D005345 ORTHO05D004682 8.2e-10 70.1 180 28.3
AL6G15030 Arabidopsis lyrata HOM05D010812 ORTHO05D004682 2.4e-09 68.6 283 25.8
THA.LOC104826873 Tarenaya hassleriana HOM05D010812 ORTHO05D004682 2.4e-09 68.6 386 23.8
CARHR208070 Cardamine hirsuta HOM05D010812 ORTHO05D004682 3.1e-09 68.2 381 22.6
Sp6g37640 Schrenkiella parvula HOM05D010812 ORTHO05D004682 3.1e-09 68.2 171 29.2
MSTRG.8382 Avicennia marina HOM05D005345 ORTHO05D004682 1.2e-08 66.2 406 25.6
ATR1127G123 Amborella trichopoda HOM05D002045 ORTHO05D002014 1.5e-08 65.9 288 26.4
SGA_v2.0_scaffold44G16618 Striga asiatica HOM05D005345 ORTHO05D004682 3.4e-08 64.7 173 28.3
EL10Ac5g10466 Beta vulgaris HOM05D005345 ORTHO05D004682 7.7e-08 63.5 241 24.5
Carub.0006s3615 Capsella rubella HOM05D002045 ORTHO05D002014 1.7e-07 62.4 108 30.6
FAN03G0742 Fragaria x ananassa HOM05D002045 ORTHO05D002014 1.7e-07 62.4 77 37.7
FAN10G4210 Fragaria x ananassa HOM05D002045 ORTHO05D002014 1.7e-07 62.4 77 37.7
Thhalv10005743m.g Eutrema salsugineum HOM05D010499 ORTHO05D013671 2.2e-07 62.0 303 26.7
Oeu022861.2 Olea europaea HOM05D002045 ORTHO05D002014 2.2e-07 62.0 67 43.3
BcaB01g05942 Brassica carinata HOM05D010812 ORTHO05D004682 2.9e-07 61.6 316 23.4
C03p02570 Brassica napus HOM05D010812 ORTHO05D004682 2.9e-07 61.6 316 23.4
BolC3t12809H Brassica oleracea HOM05D010812 ORTHO05D004682 2.9e-07 61.6 316 23.4
A03p02230 Brassica napus HOM05D010812 ORTHO05D004682 3.8e-07 61.2 265 24.2
BraA03t09587Z Brassica rapa HOM05D010812 ORTHO05D004682 3.8e-07 61.2 265 24.2
AUR62030590 Chenopodium quinoa HOM05D005345 ORTHO05D004682 3.8e-07 61.2 538 23.8
AT4G01090 Arabidopsis thaliana HOM05D002045 ORTHO05D002014 5.0e-07 60.8 89 34.8
Haze_08656 Corylus avellana HOM05D002045 ORTHO05D002014 5.0e-07 60.8 78 38.5
RcHm_v2.0_Chr1g0359001 Rosa chinensis HOM05D002045 ORTHO05D002014 5.0e-07 60.8 77 36.4
Sp6g01020 Schrenkiella parvula HOM05D002045 ORTHO05D002014 5.0e-07 60.8 142 26.8
Thhalv10028493m.g Eutrema salsugineum HOM05D002045 ORTHO05D002014 8.5e-07 60.1 173 27.2
MBI07_g24336_MAGBIO Magnolia biondii HOM05D002045 ORTHO05D002014 8.5e-07 60.1 199 25.1
THA.LOC104817047 Tarenaya hassleriana HOM05D002045 ORTHO05D002014 8.5e-07 60.1 285 24.6
AL6G52270 Arabidopsis lyrata HOM05D002045 ORTHO05D002014 1.1e-06 59.7 108 31.5
Os03g0334200 Oryza sativa ssp. japonica HOM05D021806 ORTHO05D004682 1.1e-06 59.7 173 28.9
EL10Ac5g12890 Beta vulgaris HOM05D002045 ORTHO05D002014 1.4e-06 59.3 190 30.0
SalBow3G3781 Salvia bowleyana HOM05D005345 ORTHO05D004682 1.4e-06 59.3 588 22.6
Ah.11g042470 Amaranthus hybridus HOM05D005345 ORTHO05D004682 1.9e-06 58.9 489 21.9
PSO017G7165 Papaver somniferum HOM05D005345 ORTHO05D004682 1.9e-06 58.9 111 29.7
AL5G37740 Arabidopsis lyrata HOM05D010499 ORTHO05D013671 2.5e-06 58.5 56 48.2
MD01G1076900 Malus domestica HOM05D002045 ORTHO05D002014 3.2e-06 58.2 76 35.5
Prupe.2G184400 Prunus persica HOM05D002045 ORTHO05D002014 3.2e-06 58.2 187 26.7
VMungo0540G0759 Vigna mungo HOM05D002045 ORTHO05D002014 3.2e-06 58.2 82 37.8
THA.LOC104824598 Tarenaya hassleriana HOM05D010499 ORTHO05D013671 4.2e-06 57.8 67 43.3
TAR629G3516 Trochodendron aralioides HOM05D002045 ORTHO05D002014 4.2e-06 57.8 200 26.5
A03p31850 Brassica napus HOM05D002045 ORTHO05D002014 5.5e-06 57.4 86 32.6
Duzib133G0749 Durio zibethinus HOM05D002045 ORTHO05D002014 5.5e-06 57.4 79 32.9
TWI23G0662 Tripterygium wilfordii HOM05D002045 ORTHO05D002014 5.5e-06 57.4 83 34.9
Zm00001eb015970 Zea mays HOM05D021806 ORTHO05D004682 5.5e-06 57.4 258 24.0
CARHR001000 Cardamine hirsuta HOM05D002045 ORTHO05D002014 7.2e-06 57.0 56 42.9
CDE02G3823 Ceratophyllum demersum HOM05D002045 ORTHO05D002014 7.2e-06 57.0 90 30.0
Dinv43899 Davidia involucrata HOM05D002045 ORTHO05D002014 7.2e-06 57.0 189 27.0
Sp5g06040 Schrenkiella parvula HOM05D010499 ORTHO05D013671 7.2e-06 57.0 180 32.2
C03p38860 Brassica napus HOM05D002045 ORTHO05D002014 9.4e-06 56.6 97 28.9
BolC5t28845H Brassica oleracea HOM05D002045 ORTHO05D002014 9.4e-06 56.6 129 31.8
Carub.0001s0082 Capsella rubella HOM05D002045 ORTHO05D002014 9.4e-06 56.6 122 32.0
Duzib138G1945 Durio zibethinus HOM05D002045 ORTHO05D002014 9.4e-06 56.6 79 32.9
TAR374G0195 Trochodendron aralioides HOM05D002045 ORTHO05D002014 9.4e-06 56.6 188 25.0


User provided reference genes

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