Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0067611 Lupinus albus HOM05D007521 ORTHO05D009387 1.5e-150 536.2 268 100.0
Lj1g0021108 Lotus japonicus HOM05D007521 ORTHO05D009387 6.6e-87 324.7 269 66.9
TPR.G13979 Trifolium pratense HOM05D007521 ORTHO05D009387 1.3e-82 310.5 254 65.7
Psat5g070120 Pisum sativum HOM05D007521 ORTHO05D009387 1.6e-80 303.5 261 65.1
Medtr3g093540 Medicago truncatula HOM05D007521 ORTHO05D009387 5.1e-79 298.5 268 61.9
Ca_16847_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 1.5e-75 287.0 238 66.4
Glyma.04G224700 Glycine max HOM05D007521 ORTHO05D009387 7.1e-73 278.1 232 66.4
VMungo1309G1947 Vigna mungo HOM05D006307 ORTHO05D008123 1.2e-72 277.3 246 64.2
arahy.Tifrunner.gnm1.ann1.Q2LGCQ Arachis hypogaea HOM05D007521 ORTHO05D009387 1.3e-69 267.3 254 58.3
Phvul.009G041300 Phaseolus vulgaris HOM05D007521 ORTHO05D009387 2.1e-69 266.5 240 62.9
Gohir.A05G276700 Gossypium hirsutum HOM05D007521 ORTHO05D009387 2.0e-67 260.0 256 56.6
Gorai.009G291900 Gossypium raimondii HOM05D007521 ORTHO05D009387 2.0e-67 260.0 256 56.6
Gohir.D05G278400 Gossypium hirsutum HOM05D007521 ORTHO05D009387 5.8e-67 258.5 260 56.5
MD07G1238600 Malus domestica HOM05D007521 ORTHO05D009387 7.6e-67 258.1 262 57.6
Thecc.10G187600 Theobroma cacao HOM05D007521 ORTHO05D009387 2.9e-66 256.1 260 55.8
GSVIVG01032870001 Vitis vinifera HOM05D007521 ORTHO05D009387 3.8e-66 255.8 215 61.9
Nn2g10221 Nelumbo nucifera HOM05D007521 ORTHO05D009387 1.4e-65 253.8 210 64.8
CiPaw.08G156100 Carya illinoinensis HOM05D007521 ORTHO05D009387 2.5e-65 253.1 264 52.3
Prupe.2G267400 Prunus persica HOM05D007521 ORTHO05D009387 3.2e-65 252.7 257 56.4
Dinv34514 Davidia involucrata HOM05D007521 ORTHO05D009387 5.5e-65 251.9 219 63.9
Duzib114G0131 Durio zibethinus HOM05D007521 ORTHO05D009387 9.3e-65 251.1 262 53.8
QL08p065346 Quercus lobata HOM05D007521 ORTHO05D009387 1.2e-64 250.8 260 52.3
Cpa.g.sc65.80 Carica papaya HOM05D007521 ORTHO05D009387 6.0e-64 248.4 235 55.7
Potri.019G065400 Populus trichocarpa HOM05D007521 ORTHO05D009387 6.0e-64 248.4 274 53.6
TWI09G0709 Tripterygium wilfordii HOM05D007521 ORTHO05D009387 1.8e-63 246.9 244 54.9
PSO384G1785 Papaver somniferum HOM05D007521 ORTHO05D009387 1.3e-61 240.7 209 59.3
Ciclev10033598m.g Citrus clementina HOM05D007521 ORTHO05D009387 3.7e-61 239.2 262 51.9
CANSAT56G2803 Cannabis sativa HOM05D007521 ORTHO05D009387 1.1e-60 237.7 255 52.5
PSO339G2910 Papaver somniferum HOM05D007521 ORTHO05D009387 2.6e-59 233.0 209 57.4
TAR636G2090 Trochodendron aralioides HOM05D007521 ORTHO05D009387 2.6e-59 233.0 213 59.6
FvH4_7g26320 Fragaria vesca HOM05D007521 ORTHO05D009387 4.5e-59 232.3 269 50.9
Nitab4.5_0011372g0030 Nicotiana tabacum HOM05D007521 ORTHO05D009387 7.7e-59 231.5 234 55.1
Eucgr.G03172 Eucalyptus grandis HOM05D007521 ORTHO05D009387 1.0e-58 231.1 260 52.7
vmacro09945 Vaccinium macrocarpon HOM05D006307 ORTHO05D008123 2.9e-58 229.6 224 55.8
FAN10G3062 Fragaria x ananassa HOM05D007521 ORTHO05D009387 3.8e-58 229.2 269 50.9
Cc02_g05020 Coffea canephora HOM05D007521 ORTHO05D009387 8.5e-58 228.0 220 57.3
PGR142G4361 Punica granatum HOM05D007521 ORTHO05D009387 1.9e-57 226.9 253 51.8
arahy.Tifrunner.gnm1.ann1.RI9J7M Arachis hypogaea HOM05D006307 ORTHO05D008123 4.2e-57 225.7 237 54.0
PGSC0003DMG400011658 Solanum tuberosum HOM05D007521 ORTHO05D009387 4.2e-57 225.7 234 55.1
FAN06G0083 Fragaria x ananassa HOM05D007521 ORTHO05D009387 9.4e-57 224.6 278 49.3
RcHm_v2.0_Chr1g0372781 Rosa chinensis HOM05D007521 ORTHO05D009387 2.7e-56 223.0 280 49.3
MSTRG.8869 Avicennia marina HOM05D007521 ORTHO05D009387 3.6e-56 222.6 221 54.8
THA.LOC104811673 Tarenaya hassleriana HOM05D007521 ORTHO05D009387 4.6e-56 222.2 224 53.1
Cc02_g04870 Coffea canephora HOM05D007521 ORTHO05D009387 7.9e-56 221.5 220 56.4
Migut.F00560 Erythranthe guttata HOM05D007521 ORTHO05D009387 1.8e-55 220.3 221 55.7
CiPaw.08G155800 Carya illinoinensis HOM05D007521 ORTHO05D009387 3.9e-55 219.2 267 47.9
Atru.BG.268.p Acer truncatum HOM05D007521 ORTHO05D009387 1.1e-54 217.6 191 59.2
Nitab4.5_0000375g0330 Nicotiana tabacum HOM05D007521 ORTHO05D009387 1.1e-54 217.6 246 51.6
Actinidia31757 Actinidia chinensis HOM05D007521 ORTHO05D009387 2.4e-52 209.9 215 54.9
Sabra19G0079100 Salix brachista HOM05D007521 ORTHO05D009387 7.7e-51 204.9 277 46.9
Lsat_1_v5_gn_8_11100 Lactuca sativa HOM05D007521 ORTHO05D009387 1.0e-50 204.5 199 54.3
ECA233G6052 Erigeron canadensis HOM05D007521 ORTHO05D009387 1.3e-50 204.1 223 51.1
HanXRQChr08g0223011 Helianthus annuus HOM05D007521 ORTHO05D009387 2.2e-50 203.4 215 51.2
Carub.0007s2116 Capsella rubella HOM05D007521 ORTHO05D009387 2.9e-50 203.0 231 48.9
AL7G33920 Arabidopsis lyrata HOM05D007521 ORTHO05D009387 1.4e-49 200.7 236 48.3
BcaC09g51354 Brassica carinata HOM05D007521 ORTHO05D009387 3.2e-49 199.5 229 47.6
C01p13990 Brassica napus HOM05D007521 ORTHO05D009387 7.2e-49 198.4 231 47.6
BolC1t01366H Brassica oleracea HOM05D007521 ORTHO05D009387 7.2e-49 198.4 231 47.6
Sp7g18440 Schrenkiella parvula HOM05D007521 ORTHO05D009387 9.4e-49 198.0 239 47.7
A01p11790 Brassica napus HOM05D007521 ORTHO05D009387 1.6e-48 197.2 221 49.3
BraA01t01121Z Brassica rapa HOM05D007521 ORTHO05D009387 2.1e-48 196.8 225 49.3
Sc11g0006120 Simmondsia chinensis HOM05D007521 ORTHO05D009387 2.1e-48 196.8 238 46.2
Hma1.2p1_0264F.1_g105770 Hydrangea macrophylla HOM05D007521 ORTHO05D009387 4.7e-48 195.7 247 49.8
Aa31LG6G2400 Aethionema arabicum HOM05D007521 ORTHO05D009387 1.4e-47 194.1 244 45.1
CARHR226760 Cardamine hirsuta HOM05D007521 ORTHO05D009387 2.3e-47 193.4 240 47.1
ATR1127G230 Amborella trichopoda HOM05D007521 ORTHO05D009387 1.5e-46 190.7 231 48.5
Aqoxy4G03316 Aquilegia oxysepala HOM05D007521 ORTHO05D009387 3.3e-46 189.5 209 52.2
EL10Ac2g02694 Beta vulgaris HOM05D007521 ORTHO05D009387 3.3e-46 189.5 208 51.4
CSS0047724 Camellia sinensis var. sinensis HOM05D007521 ORTHO05D009387 3.3e-46 189.5 165 61.2
BcaNung01738 Brassica carinata HOM05D007521 ORTHO05D009387 7.4e-46 188.3 242 43.4
unitig_37.g11916 Utricularia gibba HOM05D007521 ORTHO05D009387 1.7e-45 187.2 206 48.1
SGA_v2.0_scaffold60G20871 Striga asiatica HOM05D006307 ORTHO05D008123 1.4e-41 174.1 238 46.2
Peaxi162Scf00167g01120 Petunia axillaris HOM05D007521 ORTHO05D009387 7.2e-41 171.8 197 49.2
CDE11G1245 Ceratophyllum demersum HOM05D007521 ORTHO05D009387 5.7e-38 162.2 150 58.0
Cfa001178 Carpinus fangiana HOM05D007521 ORTHO05D009387 3.7e-37 159.5 173 50.3
Zm00001eb284340 Zea mays HOM05D007521 ORTHO05D009387 4.8e-37 159.1 189 49.2
DCAR_018052 Daucus carota HOM05D006307 ORTHO05D009387 5.9e-35 152.1 180 47.2
HPP92_019762 Vanilla planifolia HOM05D007521 ORTHO05D009387 3.4e-30 136.3 166 50.0
Oeu001369.2 Olea europaea HOM05D007521 ORTHO05D009387 2.2e-29 133.7 137 56.2
COL.COLO4_19497 Corchorus olitorius HOM05D007521 ORTHO05D009387 2.8e-29 133.3 163 47.9
Mapoly0070s0078 Marchantia polymorpha HOM05D007521 ORTHO05D009387 7.0e-28 128.6 210 38.1
Lj8C51T1 Lonicera japonica HOM05D007521 ORTHO05D009387 5.9e-27 125.6 144 51.4
Manes.10G004400 Manihot esculenta HOM05D007521 ORTHO05D009387 7.7e-27 125.2 160 46.9
Sopen05g030700 Solanum pennellii HOM05D007521 ORTHO05D009387 7.7e-27 125.2 145 52.4
Thhalv10026093m.g Eutrema salsugineum HOM05D007521 ORTHO05D009387 1.0e-26 124.8 172 43.6
Solyc05g052170.4 Solanum lycopersicum HOM05D007521 ORTHO05D009387 1.7e-26 124.0 145 51.7
AT4G19985 Arabidopsis thaliana HOM05D007521 ORTHO05D009387 7.2e-25 118.6 169 44.4
Gohir.D10G155835 Gossypium hirsutum HOM05D007521 ORTHO05D009387 8.0e-24 115.2 81 69.1
Actinidia07775 Actinidia chinensis HOM05D007521 ORTHO05D009387 9.8e-22 108.2 169 42.6
Hund13426 Selenicereus undatus HOM05D007521 ORTHO05D009387 1.7e-21 107.5 203 35.0
Ah.12g064700 Amaranthus hybridus HOM05D007521 ORTHO05D009387 1.1e-20 104.8 88 60.2
AagrBONN_evm.TU.Sc2ySwM_228.2023 Anthoceros agrestis HOM05D007521 ORTHO05D009387 1.8e-20 104.0 179 37.4
Gorai.011G175800 Gossypium raimondii HOM05D007521 ORTHO05D009387 7.0e-20 102.1 81 64.2
Gorai.007G054900 Gossypium raimondii HOM05D007521 ORTHO05D009387 1.3e-18 97.8 71 67.6
Pp3c3_11210 Physcomitrium patens HOM05D007521 ORTHO05D009387 1.3e-18 97.8 214 31.3
Gohir.D11G050600 Gossypium hirsutum HOM05D007521 ORTHO05D009387 2.9e-18 96.7 68 69.1
Hma1.2p1_0264F.1_g105780 Hydrangea macrophylla HOM05D007521 ORTHO05D009387 1.4e-15 87.8 67 67.2
Actinidia01020 Actinidia chinensis HOM05D007521 ORTHO05D009387 1.2e-14 84.7 86 57.0
SMO356G0638 Selaginella moellendorffii HOM05D007521 ORTHO05D009387 1.2e-14 84.7 193 35.8
SEGI_30344 Sequoiadendron giganteum HOM05D007521 ORTHO05D009387 1.3e-13 81.3 150 36.7
Hma1.2p1_0264F.1_g105790 Hydrangea macrophylla HOM05D007521 ORTHO05D009387 1.1e-12 78.2 106 48.1
CBR_g4502 Chara braunii HOM05D007521 ORTHO05D009387 2.7e-11 73.6 84 45.2
SEGI_20264 Sequoiadendron giganteum HOM05D007521 ORTHO05D009387 2.9e-10 70.1 72 55.6
Cre10.g464264 Chlamydomonas reinhardtii HOM05D007521 ORTHO05D009387 6.6e-10 68.9 95 38.9
CDE04G1691 Ceratophyllum demersum HOM05D000172 ORTHO05D000273 7.3e-09 65.5 81 49.4
ECA248G3306 Erigeron canadensis HOM05D003003 ORTHO05D008343 1.0e-07 61.6 75 38.7
Cc06_g00240 Coffea canephora HOM05D003003 ORTHO05D008343 1.4e-07 61.2 97 30.9
Dinv16947 Davidia involucrata HOM05D003003 ORTHO05D008343 1.4e-07 61.2 96 32.3
FvH4_6g09480 Fragaria vesca HOM05D003003 ORTHO05D008343 1.4e-07 61.2 88 38.6
FAN14G2421 Fragaria x ananassa HOM05D003003 ORTHO05D008343 1.4e-07 61.2 88 38.6
VMungo1383G2339 Vigna mungo HOM05D003003 ORTHO05D008343 1.4e-07 61.2 92 34.8
CANSAT21G0154 Cannabis sativa HOM05D003003 ORTHO05D008343 1.8e-07 60.8 88 37.5
Lsat_1_v5_gn_8_123140 Lactuca sativa HOM05D003003 ORTHO05D008343 2.3e-07 60.5 75 37.3
Migut.J00015 Erythranthe guttata HOM05D003003 ORTHO05D008343 3.1e-07 60.1 92 33.7
Potri.016G140000 Populus trichocarpa HOM05D003003 ORTHO05D008343 3.1e-07 60.1 103 33.0
Solyc10g074910.2 Solanum lycopersicum HOM05D003003 ORTHO05D008343 3.1e-07 60.1 72 37.5
Sopen10g027400 Solanum pennellii HOM05D003003 ORTHO05D008343 3.1e-07 60.1 72 37.5
Atru.chr8.74 Acer truncatum HOM05D003003 ORTHO05D008343 4.0e-07 59.7 88 37.5
CAN.G659.15 Capsicum annuum HOM05D003003 ORTHO05D008343 4.0e-07 59.7 75 36.0
HanXRQChr01g0000501 Helianthus annuus HOM05D003003 ORTHO05D008343 4.0e-07 59.7 75 36.0
Phvul.008G079900 Phaseolus vulgaris HOM05D003003 ORTHO05D008343 4.0e-07 59.7 92 33.7
SEGI_32854 Sequoiadendron giganteum HOM05D003003 ORTHO05D008343 4.0e-07 59.7 97 34.0
arahy.Tifrunner.gnm1.ann1.NKAS4C Arachis hypogaea HOM05D003003 ORTHO05D008343 5.2e-07 59.3 92 35.9
arahy.Tifrunner.gnm1.ann1.V4D1ZF Arachis hypogaea HOM05D003003 ORTHO05D008343 5.2e-07 59.3 92 35.9
QL07p031603 Quercus lobata HOM05D003003 ORTHO05D008343 5.2e-07 59.3 97 33.0
AUR62029798 Chenopodium quinoa HOM05D003003 ORTHO05D008343 6.8e-07 58.9 88 36.4
Ca_07787_v3 Cicer arietinum L. HOM05D003003 ORTHO05D008343 6.8e-07 58.9 92 34.8
CsaV3_4G027340 Cucumis sativus L. HOM05D003003 ORTHO05D008343 6.8e-07 58.9 97 30.9
Lalb_Chr03g0043871 Lupinus albus HOM05D003003 ORTHO05D008343 6.8e-07 58.9 89 34.8
Nitab4.5_0001215g0150 Nicotiana tabacum HOM05D003003 ORTHO05D008343 6.8e-07 58.9 72 37.5
Aa31LG2G13930 Aethionema arabicum HOM05D003003 ORTHO05D008343 8.9e-07 58.5 90 34.4
EL10Ac7g17135 Beta vulgaris HOM05D003003 ORTHO05D008343 8.9e-07 58.5 82 37.8
AUR62006445 Chenopodium quinoa HOM05D003003 ORTHO05D008343 8.9e-07 58.5 88 36.4
Gohir.D02G106600 Gossypium hirsutum HOM05D003003 ORTHO05D008343 8.9e-07 58.5 88 36.4
Gorai.005G121100 Gossypium raimondii HOM05D003003 ORTHO05D008343 8.9e-07 58.5 88 36.4
Peaxi162Scf00374g00029 Petunia axillaris HOM05D003003 ORTHO05D008343 8.9e-07 58.5 72 36.1
PGR004G0262 Punica granatum HOM05D003003 ORTHO05D008343 8.9e-07 58.5 79 38.0
Thecc.04G148400 Theobroma cacao HOM05D003003 ORTHO05D008343 8.9e-07 58.5 88 35.2
TPR.G24287 Trifolium pratense HOM05D003003 ORTHO05D008343 8.9e-07 58.5 88 36.4
arahy.Tifrunner.gnm1.ann1.7LY3NN Arachis hypogaea HOM05D003003 ORTHO05D008343 1.2e-06 58.2 92 34.8
ClCG04G006230 Citrullus lanatus HOM05D003003 ORTHO05D008343 1.2e-06 58.2 82 35.4
Haze_21204 Corylus avellana HOM05D003003 ORTHO05D008343 1.2e-06 58.2 88 35.2
Duzib151G0009 Durio zibethinus HOM05D003003 ORTHO05D008343 1.2e-06 58.2 80 37.5
Eucgr.K01296 Eucalyptus grandis HOM05D003003 ORTHO05D008343 1.2e-06 58.2 72 37.5
MBI15_g36681_MAGBIO Magnolia biondii HOM05D003003 ORTHO05D008343 1.2e-06 58.2 72 37.5
MD04G1177300 Malus domestica HOM05D003003 ORTHO05D008343 1.2e-06 58.2 72 38.9
MD12G1192400 Malus domestica HOM05D003003 ORTHO05D008343 1.2e-06 58.2 92 34.8
Manes.08G168900 Manihot esculenta HOM05D003003 ORTHO05D008343 1.2e-06 58.2 97 32.0
Medtr7g073990 Medicago truncatula HOM05D003003 ORTHO05D008343 1.2e-06 58.2 71 38.0
Nitab4.5_0007589g0030 Nicotiana tabacum HOM05D003003 ORTHO05D008343 1.5e-06 57.8 72 36.1
Sabra04G0156600 Salix brachista HOM05D003003 ORTHO05D008343 1.5e-06 57.8 88 35.2
THA.LOC104806235 Tarenaya hassleriana HOM05D003003 ORTHO05D008343 1.5e-06 57.8 101 31.7
CSS0014362 Camellia sinensis var. sinensis HOM05D003003 ORTHO05D008343 2.0e-06 57.4 97 30.9
CDE06G1541 Ceratophyllum demersum HOM05D003003 ORTHO05D008343 2.0e-06 57.4 88 34.1
Glyma.09G272400 Glycine max HOM05D003003 ORTHO05D008343 2.0e-06 57.4 92 32.6
Gohir.A02G089500 Gossypium hirsutum HOM05D003003 ORTHO05D008343 2.0e-06 57.4 87 36.8
PSO170G6425 Papaver somniferum HOM05D003003 ORTHO05D008343 2.0e-06 57.4 72 37.5
Carub.0001s3039 Capsella rubella HOM05D003003 ORTHO05D008343 2.6e-06 57.0 218 24.3
Ciclev10012371m.g Citrus clementina HOM05D003003 ORTHO05D008343 2.6e-06 57.0 92 32.6
Glyma.18G216900 Glycine max HOM05D003003 ORTHO05D008343 2.6e-06 57.0 92 32.6
Prupe.6G296900 Prunus persica HOM05D003003 ORTHO05D008343 2.6e-06 57.0 88 35.2
Sed0024487 Sechium edule HOM05D003003 ORTHO05D008343 2.6e-06 57.0 72 37.5
GSVIVG01029873001 Vitis vinifera HOM05D003003 ORTHO05D008343 2.6e-06 57.0 97 33.0
DCAR_023966 Daucus carota HOM05D003003 ORTHO05D008343 3.4e-06 56.6 88 34.1
unitig_27.g24893 Utricularia gibba HOM05D003003 ORTHO05D008343 3.4e-06 56.6 72 37.5
Zm00001eb290780 Zea mays HOM05D003003 ORTHO05D008343 3.4e-06 56.6 92 34.8
AL1G46140 Arabidopsis lyrata HOM05D003003 ORTHO05D008343 4.4e-06 56.2 72 36.1
BcaB03g13769 Brassica carinata HOM05D003003 ORTHO05D008343 4.4e-06 56.2 72 36.1
BcaC05g27931 Brassica carinata HOM05D003003 ORTHO05D008343 4.4e-06 56.2 72 36.1
A05p25290 Brassica napus HOM05D005120 ORTHO05D006174 4.4e-06 56.2 72 36.1
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 4.4e-06 56.2 72 36.1
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 4.4e-06 56.2 72 36.1
BraA05t21414Z Brassica rapa HOM05D003003 ORTHO05D008343 4.4e-06 56.2 72 36.1
CARHR031420 Cardamine hirsuta HOM05D003003 ORTHO05D008343 4.4e-06 56.2 72 36.1
Rhsim05G0233000 Rhododendron simsii HOM05D003003 ORTHO05D008343 4.4e-06 56.2 72 36.1
Hund19741 Selenicereus undatus HOM05D003003 ORTHO05D008343 4.4e-06 56.2 71 38.0
Lj2A56T95 Lonicera japonica HOM05D003003 ORTHO05D008343 5.8e-06 55.8 92 32.6
Sp1g27730 Schrenkiella parvula HOM05D003003 ORTHO05D008343 5.8e-06 55.8 72 34.7
vmacro20392 Vaccinium macrocarpon HOM05D003003 ORTHO05D008343 5.8e-06 55.8 97 30.9
CiPaw.09G223200 Carya illinoinensis HOM05D003003 ORTHO05D008343 7.5e-06 55.5 88 34.1
Hma1.2p1_0174F.1_g076680 Hydrangea macrophylla HOM05D003003 ORTHO05D008343 7.5e-06 55.5 72 36.1
Prupe.6G297300 Prunus persica HOM05D003003 ORTHO05D008343 7.5e-06 55.5 88 34.1
Sc22g0001890 Simmondsia chinensis HOM05D003003 ORTHO05D008343 7.5e-06 55.5 88 34.1
Lj1g0019401 Lotus japonicus HOM05D003003 ORTHO05D008343 9.8e-06 55.1 92 33.7


User provided reference genes

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