Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0067091 Lupinus albus HOM05D005943 ORTHO05D007328 6.8e-122 440.7 220 100.0
Lalb_Chr23g0271691 Lupinus albus HOM05D005943 ORTHO05D007328 2.2e-96 355.9 182 96.7
Ca_16733_v3 Cicer arietinum L. HOM05D005943 ORTHO05D007328 3.8e-96 355.1 204 87.7
Psat3g152320 Pisum sativum HOM05D005943 ORTHO05D007328 3.5e-94 348.6 182 94.0
CiPaw.07G023200 Carya illinoinensis HOM05D005943 ORTHO05D007328 6.0e-94 347.8 182 92.3
Lj1g0013041 Lotus japonicus HOM05D005943 ORTHO05D007328 1.3e-93 346.7 182 93.4
Glyma.06G132000 Glycine max HOM05D005943 ORTHO05D007328 3.0e-93 345.5 182 93.4
TPR.G33656 Trifolium pratense HOM05D005943 ORTHO05D007328 3.9e-93 345.1 181 93.4
Glyma.04G232900 Glycine max HOM05D005943 ORTHO05D007328 8.7e-93 344.0 182 93.4
Phvul.009G047900 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 8.7e-93 344.0 182 92.9
Medtr3g091920 Medicago truncatula HOM05D005943 ORTHO05D007328 1.1e-92 343.6 179 93.9
Manes.08G116100 Manihot esculenta HOM05D005943 ORTHO05D007328 5.6e-92 341.3 182 90.7
Duzib177G0451 Durio zibethinus HOM05D005943 ORTHO05D007328 7.4e-92 340.9 182 89.6
Ciclev10002634m.g Citrus clementina HOM05D005943 ORTHO05D007328 1.3e-91 340.1 182 89.6
Gorai.007G301600 Gossypium raimondii HOM05D005943 ORTHO05D007328 1.3e-91 340.1 182 89.6
Potri.005G023600 Populus trichocarpa HOM05D005943 ORTHO05D007328 1.3e-91 340.1 182 89.0
RcHm_v2.0_Chr3g0456101 Rosa chinensis HOM05D005943 ORTHO05D007328 1.3e-91 340.1 182 90.7
Haze_04120 Corylus avellana HOM05D005943 ORTHO05D007328 1.6e-91 339.7 178 92.1
Thecc.05G315300 Theobroma cacao HOM05D005943 ORTHO05D007328 1.6e-91 339.7 182 89.0
Potri.013G013700 Populus trichocarpa HOM05D005943 ORTHO05D007328 2.1e-91 339.3 182 88.5
CANSAT35G1584 Cannabis sativa HOM05D005943 ORTHO05D007328 2.8e-91 339.0 182 89.6
Gohir.A11G269200 Gossypium hirsutum HOM05D005943 ORTHO05D007328 2.8e-91 339.0 182 89.0
Gohir.D11G279400 Gossypium hirsutum HOM05D005943 ORTHO05D007328 2.8e-91 339.0 182 89.0
Aqoxy5G00777 Aquilegia oxysepala HOM05D005943 ORTHO05D007328 3.6e-91 338.6 182 89.6
Cc02_g34350 Coffea canephora HOM05D005943 ORTHO05D007328 4.8e-91 338.2 182 88.5
Dinv40356 Davidia involucrata HOM05D005943 ORTHO05D007328 4.8e-91 338.2 182 89.0
TWI56G0702 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 4.8e-91 338.2 182 89.0
unitig_0.g32 Utricularia gibba HOM05D005943 ORTHO05D007328 4.8e-91 338.2 181 88.4
Eucgr.L02935 Eucalyptus grandis HOM05D005943 ORTHO05D007328 6.2e-91 337.8 177 91.5
GSVIVG01031169001 Vitis vinifera HOM05D005943 ORTHO05D007328 6.2e-91 337.8 182 89.0
CSS0008719 Camellia sinensis var. sinensis HOM05D005943 ORTHO05D007328 8.1e-91 337.4 182 88.5
Dinv30834 Davidia involucrata HOM05D005943 ORTHO05D007328 8.1e-91 337.4 182 88.5
Cpa.g.sc48.107 Carica papaya HOM05D005943 ORTHO05D007328 1.1e-90 337.0 182 89.0
CsaV3_1G038680 Cucumis sativus L. HOM05D005943 ORTHO05D007328 1.1e-90 337.0 182 87.9
QL03p019642 Quercus lobata HOM05D005943 ORTHO05D007328 1.1e-90 337.0 181 89.0
PGR031G0471 Punica granatum HOM05D005943 ORTHO05D007328 2.4e-90 335.9 179 88.8
HanXRQChr11g0339821 Helianthus annuus HOM05D005943 ORTHO05D007328 3.1e-90 335.5 182 89.0
MSTRG.4510 Avicennia marina HOM05D005943 ORTHO05D007328 6.9e-90 334.3 182 87.4
Migut.E01764 Erythranthe guttata HOM05D005943 ORTHO05D007328 6.9e-90 334.3 182 87.4
MD04G1198400 Malus domestica HOM05D005943 ORTHO05D007328 1.2e-89 333.6 189 84.7
PSO170G5805 Papaver somniferum HOM05D005943 ORTHO05D007328 1.2e-89 333.6 182 87.4
PSO407G0008 Papaver somniferum HOM05D005943 ORTHO05D007328 1.2e-89 333.6 182 87.4
Solyc01g099890.3 Solanum lycopersicum HOM05D005943 ORTHO05D007328 1.2e-89 333.6 182 88.5
Sopen01g043410 Solanum pennellii HOM05D005943 ORTHO05D007328 1.2e-89 333.6 182 88.5
COL.COLO4_10548 Corchorus olitorius HOM05D005943 ORTHO05D007328 1.5e-89 333.2 179 88.3
MD12G1211900 Malus domestica HOM05D005943 ORTHO05D007328 2.6e-89 332.4 182 87.4
Prupe.6G319400 Prunus persica HOM05D005943 ORTHO05D007328 3.4e-89 332.0 182 87.9
Sc06g0003910 Simmondsia chinensis HOM05D005943 ORTHO05D007328 4.5e-89 331.6 182 86.3
ECA236G0332 Erigeron canadensis HOM05D005943 ORTHO05D007328 5.8e-89 331.3 182 87.4
Nn3g21529 Nelumbo nucifera HOM05D005943 ORTHO05D007328 5.8e-89 331.3 182 85.2
Os01g0314300 Oryza sativa ssp. japonica HOM05D005943 ORTHO05D007328 1.3e-88 330.1 182 85.2
Sed0012379 Sechium edule HOM05D005943 ORTHO05D007328 1.3e-88 330.1 178 88.2
Sed0027178 Sechium edule HOM05D005943 ORTHO05D007328 1.3e-88 330.1 182 85.7
AUR62005222 Chenopodium quinoa HOM05D005943 ORTHO05D007328 2.2e-88 329.3 182 86.3
Duzib128G1848 Durio zibethinus HOM05D005943 ORTHO05D007328 2.9e-88 328.9 176 90.3
CDE02G2801 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 3.8e-88 328.6 182 85.2
DCAR_022176 Daucus carota HOM05D005943 ORTHO05D007328 8.4e-88 327.4 194 84.5
Nn4g25770 Nelumbo nucifera HOM05D005943 ORTHO05D007328 8.4e-88 327.4 176 88.6
Sabra05G0029200 Salix brachista HOM05D001727 ORTHO05D050481 1.4e-87 326.6 195 82.1
ATR0796G119 Amborella trichopoda HOM05D005943 ORTHO05D007328 1.9e-87 326.2 176 89.2
Lsat_1_v5_gn_7_72860 Lactuca sativa HOM05D005943 ORTHO05D007328 2.4e-87 325.9 179 87.2
PGSC0003DMG400024722 Solanum tuberosum HOM05D005943 ORTHO05D007328 2.4e-87 325.9 182 86.3
Atru.chr2.102 Acer truncatum HOM05D001727 ORTHO05D001758 3.2e-87 325.5 172 90.7
Sabra13G0012200 Salix brachista HOM05D001727 ORTHO05D007328 3.2e-87 325.5 176 87.5
HPP92_018258 Vanilla planifolia HOM05D005943 ORTHO05D007328 3.2e-87 325.5 182 83.0
Mapoly0028s0141 Marchantia polymorpha HOM05D005943 ORTHO05D007328 1.6e-86 323.2 182 85.2
THA.LOC104805894 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 1.6e-86 323.2 182 83.5
Hund07108 Selenicereus undatus HOM05D005943 ORTHO05D007328 2.1e-86 322.8 178 86.0
Rhsim05G0137500 Rhododendron simsii HOM05D005943 ORTHO05D007328 2.7e-86 322.4 202 79.2
Sp1g07730 Schrenkiella parvula HOM05D005943 ORTHO05D007328 2.7e-86 322.4 182 84.6
SGA_v2.0_scaffold42G16032 Striga asiatica HOM05D005943 ORTHO05D007328 4.6e-86 321.6 196 81.1
TWI12G0949 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 4.6e-86 321.6 172 90.1
BcaC05g24766 Brassica carinata HOM05D005943 ORTHO05D007328 7.9e-86 320.9 182 84.1
MELO3C015293.2 Cucumis melo HOM05D001727 ORTHO05D001758 7.9e-86 320.9 173 87.3
AagrBONN_evm.TU.Sc2ySwM_228.5507 Anthoceros agrestis HOM05D005943 ORTHO05D007328 1.3e-85 320.1 176 85.8
CARHR009020 Cardamine hirsuta HOM05D005943 ORTHO05D007328 1.3e-85 320.1 182 83.5
Thhalv10008886m.g Eutrema salsugineum HOM05D005943 ORTHO05D007328 1.3e-85 320.1 182 83.5
Oeu048875.1 Olea europaea HOM05D005943 ORTHO05D007328 3.9e-85 318.5 182 84.6
AT1G09150 Arabidopsis thaliana HOM05D005943 ORTHO05D007328 8.7e-85 317.4 182 83.0
THA.LOC104820740 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 1.1e-84 317.0 178 84.8
Pp3c25_690 Physcomitrium patens HOM05D005943 ORTHO05D007328 1.5e-84 316.6 182 83.5
Carub.0001s0844 Capsella rubella HOM05D005943 ORTHO05D007328 1.9e-84 316.2 182 83.0
AL1G19590 Arabidopsis lyrata HOM05D005943 ORTHO05D007328 2.5e-84 315.8 182 82.4
BraA06t23801Z Brassica rapa HOM05D005943 ORTHO05D007328 1.3e-83 313.5 177 84.2
A06p05940 Brassica napus HOM05D005943 ORTHO05D007328 1.5e-81 306.6 174 83.3
C05p07140 Brassica napus HOM05D005943 ORTHO05D007328 1.5e-81 306.6 174 83.3
EL10Ac4g09897 Beta vulgaris HOM05D005943 ORTHO05D007328 2.6e-81 305.8 182 82.4
Peaxi162Scf00037g01419 Petunia axillaris HOM05D005943 ORTHO05D007328 2.6e-81 305.8 178 83.7
C08p12460 Brassica napus HOM05D005943 ORTHO05D007328 5.8e-81 304.7 174 83.3
C08p12470 Brassica napus HOM05D005943 ORTHO05D007328 5.8e-81 304.7 174 82.8
BolC8t48886H Brassica oleracea HOM05D005943 ORTHO05D007328 7.6e-81 304.3 173 83.8
A08p34800 Brassica napus HOM05D005943 ORTHO05D007328 1.3e-80 303.5 174 82.2
MD04G1083700 Malus domestica HOM05D005943 ORTHO05D007328 6.5e-80 301.2 208 73.6
arahy.Tifrunner.gnm1.ann1.KZ6QJ9 Arachis hypogaea HOM05D005943 ORTHO05D007328 4.6e-78 295.0 155 94.2
VMungo1309G2765 Vigna mungo HOM05D005943 ORTHO05D007328 1.3e-77 293.5 153 91.5
Nitab4.5_0003113g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 5.1e-77 291.6 183 79.2
FAN02G3650 Fragaria x ananassa HOM05D005943 ORTHO05D007328 1.5e-76 290.0 182 78.6
SMO169G0068 Selaginella moellendorffii HOM05D005943 ORTHO05D007328 2.1e-75 286.2 189 75.7
BcaC07g38477 Brassica carinata HOM05D005943 ORTHO05D007328 1.8e-74 283.1 183 77.6
FAN09G2521 Fragaria x ananassa HOM05D005943 ORTHO05D007328 1.8e-74 283.1 177 78.0
Nitab4.5_0003497g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 2.4e-74 282.7 156 88.5
CDE09G0522 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 1.3e-72 276.9 149 85.2
Lj7A623G46 Lonicera japonica HOM05D005943 ORTHO05D007328 1.3e-72 276.9 151 88.7
AUR62000742 Chenopodium quinoa HOM05D005943 ORTHO05D007328 1.4e-71 273.5 160 81.2
Aa31sc55G100 Aethionema arabicum HOM05D005943 ORTHO05D007328 1.3e-69 266.9 155 83.2
Atru.chr6.2339 Acer truncatum HOM05D005943 ORTHO05D007328 2.2e-67 259.6 187 72.2
FvH4_6g06770 Fragaria vesca HOM05D005943 ORTHO05D007328 1.5e-65 253.4 187 73.3
BraA08t35391Z Brassica rapa HOM05D005943 ORTHO05D007328 2.6e-65 252.7 139 82.7
arahy.Tifrunner.gnm1.ann1.2NZ4WG Arachis hypogaea HOM05D000716 ORTHO05D004822 3.2e-63 245.7 126 92.9
Zm00001eb339860 Zea mays HOM05D005943 ORTHO05D007328 3.6e-62 242.3 130 85.4
vmacro19698 Vaccinium macrocarpon HOM05D005943 ORTHO05D007328 3.9e-61 238.8 128 85.2
PRCOL_00003880 Prasinoderma coloniale HOM05D005943 ORTHO05D007328 6.9e-58 228.0 184 58.2
MCO12G098 Micromonas commoda HOM05D005943 ORTHO05D007328 5.0e-56 221.9 185 58.9
Haze_26177 Corylus avellana HOM05D005943 ORTHO05D007328 1.1e-55 220.7 177 56.5
SalBow1G5257 Salvia bowleyana HOM05D005943 ORTHO05D007328 1.4e-55 220.3 196 60.7
MBI18_g25341_MAGBIO Magnolia biondii HOM05D005943 ORTHO05D007328 1.6e-49 200.3 105 90.5
Phvul.009G047833 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 2.0e-49 199.9 105 91.4
Eucgr.H03253 Eucalyptus grandis HOM05D005943 ORTHO05D007328 2.2e-48 196.4 105 87.6
TAR362G1289 Trochodendron aralioides HOM05D005943 ORTHO05D007328 6.5e-48 194.9 105 86.7
SEGI_36457 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 3.6e-46 189.1 101 88.1
Duzib106G1343 Durio zibethinus HOM05D005943 ORTHO05D007328 4.4e-44 182.2 205 53.7
TAR633G1587 Trochodendron aralioides HOM05D005943 ORTHO05D007328 4.5e-41 172.2 154 61.7
HPP92_018260 Vanilla planifolia HOM05D005943 ORTHO05D007328 1.3e-40 170.6 100 78.0
BcaC07g38474 Brassica carinata HOM05D005943 ORTHO05D007328 1.9e-39 166.8 92 84.8
Eucgr.H03239 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.2e-38 164.1 92 84.8
Eucgr.H03249 Eucalyptus grandis HOM05D005943 ORTHO05D007328 8.0e-38 161.4 86 87.2
CBR_g36436 Chara braunii HOM05D005943 ORTHO05D007328 2.0e-36 156.8 91 74.7
Cre50.g761397 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 5.9e-33 145.2 127 55.1
CBR_g20980 Chara braunii HOM05D005943 ORTHO05D007328 8.5e-32 141.4 93 72.0
Eucgr.H03245 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.0e-29 134.4 92 72.8
ClCG03G017220 Citrullus lanatus HOM05D001727 ORTHO05D001758 5.7e-28 128.6 66 87.9
Eucgr.H03250 Eucalyptus grandis HOM05D005943 ORTHO05D007328 7.0e-26 121.7 70 87.1
EL10Ac5g11162 Beta vulgaris HOM05D005943 ORTHO05D007328 1.3e-24 117.5 77 74.0
Nn1g03974 Nelumbo nucifera HOM05D005943 ORTHO05D007328 1.7e-16 90.5 50 78.0
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 4.3e-15 85.9 182 30.8
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 7.3e-15 85.1 183 31.1
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 2.8e-14 83.2 182 30.8
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 2.8e-14 83.2 181 32.0
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 3.6e-14 82.8 182 31.9
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 6.2e-14 82.0 182 32.4
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 8.0e-14 81.6 182 31.9
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 1.4e-13 80.9 181 33.7
SEGI_40081 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 1.8e-13 80.5 49 79.6
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 3.1e-13 79.7 182 31.3
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 5.2e-13 79.0 181 31.5
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 5.2e-13 79.0 181 30.4
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 6.8e-13 78.6 182 30.2
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 8.9e-13 78.2 182 28.6
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 8.9e-13 78.2 182 31.3
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 1.2e-12 77.8 185 28.6
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 1.2e-12 77.8 182 29.7
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 2.0e-12 77.0 183 29.5
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 5.8e-12 75.5 182 28.6
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 7.5e-12 75.1 184 31.5
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 1.7e-11 73.9 181 28.7
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 1.7e-11 73.9 182 28.0
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 2.2e-11 73.6 182 30.2
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 2.9e-11 73.2 181 28.7
Cre03.g168605 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 4.9e-11 72.4 51 58.8
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 8.3e-11 71.6 182 27.5
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 1.1e-10 71.2 197 26.9
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 1.2e-09 67.8 137 32.8
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 2.7e-09 66.6 180 31.1
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 1.3e-08 64.3 198 25.3
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 7.3e-07 58.5 112 33.0
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 1.2e-06 57.8 133 29.3
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 3.6e-06 56.2 150 27.3


User provided reference genes

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