Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 3.5e-161 571.6 300 100.0
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 2.2e-102 376.3 306 66.0
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 4.8e-94 348.6 307 65.1
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 1.1e-93 347.4 303 65.0
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 1.2e-92 344.0 303 64.0
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 5.1e-88 328.6 304 61.8
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 8.8e-88 327.8 309 60.8
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 1.5e-87 327.0 306 62.4
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 1.1e-85 320.9 308 60.1
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 3.1e-85 319.3 266 63.2
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 1.7e-83 313.5 304 60.2
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 2.2e-83 313.2 305 60.0
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 3.8e-83 312.4 302 59.6
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 9.4e-82 307.8 309 57.0
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 1.6e-81 307.0 301 60.5
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 4.7e-81 305.4 301 59.1
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.1e-79 300.8 309 56.0
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 4.4e-79 298.9 310 57.7
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 5.7e-79 298.5 308 57.1
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 9.7e-79 297.7 308 57.5
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 2.2e-78 296.6 309 55.3
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 6.3e-78 295.0 310 55.8
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 8.2e-78 294.7 309 57.9
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 1.4e-77 293.9 309 58.3
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 1.8e-77 293.5 306 58.2
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 4.1e-77 292.4 308 56.8
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 5.3e-77 292.0 295 57.3
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 9.1e-77 291.2 309 56.3
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 1.6e-76 290.4 309 56.6
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 1.6e-76 290.4 304 57.6
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 2.7e-76 289.7 309 58.3
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 2.2e-75 286.6 305 53.8
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 2.2e-75 286.6 309 55.0
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 5.0e-75 285.4 300 56.3
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 6.5e-75 285.0 307 54.1
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 1.5e-74 283.9 305 53.4
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.9e-74 283.5 307 53.7
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 1.2e-73 280.8 309 53.1
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 1.6e-73 280.4 309 56.6
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 2.1e-73 280.0 305 53.1
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 4.7e-73 278.9 352 50.0
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 6.1e-73 278.5 311 53.1
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 8.0e-73 278.1 309 52.4
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.8e-72 276.9 307 55.4
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 1.2e-71 274.2 272 58.1
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 3.4e-71 272.7 307 53.1
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 7.5e-71 271.6 305 53.1
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 1.7e-70 270.4 310 50.6
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 8.3e-70 268.1 310 52.6
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 8.3e-70 268.1 359 48.7
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 1.8e-69 266.9 308 52.9
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 2.4e-69 266.5 308 53.9
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 2.4e-69 266.5 307 52.4
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 2.4e-69 266.5 360 48.6
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 2.4e-69 266.5 320 51.9
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 3.1e-69 266.2 309 52.1
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 4.1e-69 265.8 365 47.4
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 1.2e-68 264.2 303 54.5
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 2.7e-68 263.1 310 50.3
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 1.7e-67 260.4 304 52.0
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 1.7e-67 260.4 314 53.5
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 1.7e-67 260.4 304 52.6
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 2.2e-67 260.0 307 52.8
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 8.5e-67 258.1 308 51.9
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 1.1e-66 257.7 308 50.3
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 9.4e-66 254.6 308 49.7
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 1.6e-65 253.8 303 50.2
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 2.1e-65 253.4 367 45.0
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 6.1e-65 251.9 307 51.5
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 6.1e-65 251.9 282 51.4
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 1.4e-64 250.8 286 50.7
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 1.5e-63 247.3 305 50.5
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 1.5e-63 247.3 305 50.2
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 3.4e-63 246.1 304 50.3
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 7.5e-63 245.0 307 51.5
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 2.8e-62 243.0 306 51.0
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 3.7e-62 242.7 378 44.4
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 8.3e-62 241.5 306 50.0
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 8.3e-62 241.5 306 50.0
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 4.1e-61 239.2 309 48.9
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 5.4e-61 238.8 308 47.1
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 1.7e-59 233.8 306 48.4
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 2.3e-59 233.4 307 46.6
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 1.1e-58 231.1 304 49.0
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 1.2e-57 227.6 315 46.0
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 1.0e-56 224.6 303 48.2
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 8.9e-56 221.5 314 45.5
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 3.4e-55 219.5 305 44.6
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 3.4e-55 219.5 258 48.1
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 2.9e-54 216.5 307 45.6
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 2.9e-54 216.5 304 45.1
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 3.7e-54 216.1 305 46.6
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 1.1e-53 214.5 297 44.1
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 5.4e-53 212.2 321 45.2
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 9.2e-53 211.5 297 44.4
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 1.2e-52 211.1 299 44.8
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 2.0e-52 210.3 307 45.9
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 2.7e-52 209.9 307 45.6
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 3.9e-51 206.1 272 47.4
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 5.0e-51 205.7 313 46.6
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 5.0e-51 205.7 351 43.6
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 7.3e-50 201.8 297 42.8
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 9.5e-50 201.4 284 46.1
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 8.0e-49 198.4 298 43.0
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 1.5e-47 194.1 294 43.2
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 2.0e-47 193.7 313 42.5
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 1.3e-46 191.0 247 49.4
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 2.9e-46 189.9 303 41.6
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 3.7e-46 189.5 295 43.1
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 6.4e-46 188.7 307 41.0
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 1.4e-45 187.6 294 42.5
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 1.9e-45 187.2 304 40.5
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 2.4e-45 186.8 334 38.0
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 3.2e-45 186.4 303 41.3
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 1.2e-44 184.5 300 42.0
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 2.0e-44 183.7 300 41.7
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 2.7e-44 183.3 310 41.6
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 7.8e-44 181.8 300 41.3
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 1.3e-43 181.0 292 41.8
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 1.3e-43 181.0 292 41.8
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 2.3e-43 180.3 194 55.7
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 1.9e-42 177.2 330 38.8
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 9.5e-42 174.9 306 39.2
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 1.2e-41 174.5 303 39.9
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 1.8e-40 170.6 302 38.7
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 1.8e-40 170.6 306 39.9
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 2.3e-40 170.2 243 44.4
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 5.2e-40 169.1 301 39.2
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 2.0e-39 167.2 290 39.0
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 2.6e-39 166.8 290 41.4
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 7.5e-39 165.2 149 59.7
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 2.9e-38 163.3 242 43.8
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 1.9e-37 160.6 365 37.0
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 4.3e-34 149.4 145 57.2
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 7.3e-34 148.7 300 37.7
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 1.1e-32 144.8 203 41.9
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 4.0e-32 142.9 154 55.8
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.2e-31 141.4 151 52.3
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.5e-31 141.0 151 52.3
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 7.6e-31 138.7 148 53.4
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 3.8e-30 136.3 162 51.9
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.8e-30 136.3 357 33.6
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 4.9e-30 136.0 302 35.4
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 1.9e-29 134.0 254 40.2
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 3.2e-29 133.3 213 44.6
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 7.3e-26 122.1 142 46.5
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 7.3e-26 122.1 128 54.7
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 2.1e-25 120.6 194 44.3
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 8.1e-25 118.6 141 50.4
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 4.0e-24 116.3 283 35.3
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 6.9e-24 115.5 250 35.2
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 8.9e-24 115.2 164 47.6
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.5e-23 114.4 258 36.4
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 2.2e-22 110.5 246 36.6
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 1.9e-21 107.5 116 56.0
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 9.3e-21 105.1 312 31.1
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 9.3e-21 105.1 359 27.0
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 3.0e-19 100.1 267 35.6
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 3.9e-19 99.8 217 36.9
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 8.7e-19 98.6 92 54.3
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 1.1e-18 98.2 180 37.8
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 1.1e-18 98.2 180 37.8
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 1.5e-15 87.8 114 50.0
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 4.5e-15 86.3 114 50.0
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 9.9e-15 85.1 189 38.6
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 2.9e-14 83.6 82 58.5
Os02g0831400 Oryza sativa ssp. japonica HOM05D003707 ORTHO05D004309 9.3e-13 78.6 246 30.5
Hma1.2p1_0526F.1_g172800 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.3e-11 74.7 48 75.0
C09p37650 Brassica napus HOM05D003707 ORTHO05D004309 3.0e-11 73.6 215 31.6
BolC9t56595H Brassica oleracea HOM05D003707 ORTHO05D004309 3.0e-11 73.6 215 31.6
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 8.7e-11 72.0 257 29.2
CDE05G1426 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 1.1e-10 71.6 211 30.3
RcHm_v2.0_Chr5g0040961 Rosa chinensis HOM05D003707 ORTHO05D004309 3.6e-09 66.6 93 45.2
BcaC04g20946 Brassica carinata HOM05D003707 ORTHO05D004309 4.8e-09 66.2 200 31.0
RcHm_v2.0_Chr5g0044811 Rosa chinensis HOM05D003707 ORTHO05D004309 4.8e-09 66.2 63 52.4
BcaB02g06537 Brassica carinata HOM05D003707 ORTHO05D004309 3.4e-07 60.1 57 52.6
MELO3C030322.2 Cucumis melo HOM05D003707 ORTHO05D004309 3.4e-07 60.1 222 29.3
Lsat_1_v5_gn_1_3000 Lactuca sativa HOM05D003707 ORTHO05D004309 2.9e-06 57.0 92 45.7
SMO174G0209 Selaginella moellendorffii HOM05D019185 ORTHO05D031160 6.4e-06 55.8 239 25.9


User provided reference genes

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