Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0064791 Lupinus albus HOM05D005719 ORTHO05D007030 5.8e-275 950.3 485 100.0
Glyma.06G092200 Glycine max HOM05D005719 ORTHO05D007030 2.3e-207 725.7 489 76.7
Phvul.009G145500 Phaseolus vulgaris HOM05D005719 ORTHO05D007030 3.1e-207 725.3 489 75.9
Glyma.04G090400 Glycine max HOM05D005719 ORTHO05D007030 6.4e-205 717.6 489 76.1
Psat5g018640 Pisum sativum HOM05D005719 ORTHO05D007030 8.9e-199 697.2 490 74.3
VMungo1309G0989 Vigna mungo HOM05D005719 ORTHO05D007030 1.9e-196 689.5 459 75.2
TPR.G12418 Trifolium pratense HOM05D005719 ORTHO05D007030 4.6e-195 684.9 487 73.5
Lj1g0010479 Lotus japonicus HOM05D005719 ORTHO05D007030 2.3e-194 682.6 488 72.3
arahy.Tifrunner.gnm1.ann1.SLT0HR Arachis hypogaea HOM05D005719 ORTHO05D007030 1.1e-193 680.2 492 71.5
Medtr3g111330 Medicago truncatula HOM05D005719 ORTHO05D007030 3.3e-193 678.7 502 71.7
arahy.Tifrunner.gnm1.ann1.I1WLRD Arachis hypogaea HOM05D005719 ORTHO05D007030 1.2e-192 676.8 490 71.0
TPR.G21947 Trifolium pratense HOM05D005719 ORTHO05D007030 4.3e-185 651.7 458 74.5
TWI56G1147 Tripterygium wilfordii HOM05D005719 ORTHO05D007030 4.2e-172 608.6 488 64.5
CSS0009932 Camellia sinensis var. sinensis HOM05D005719 ORTHO05D007030 1.8e-167 593.2 497 61.6
QL12p040011 Quercus lobata HOM05D005719 ORTHO05D007030 4.0e-167 592.0 498 63.3
Duzib093G1837 Durio zibethinus HOM05D005719 ORTHO05D007030 5.3e-167 591.7 483 61.9
vmacro04622 Vaccinium macrocarpon HOM05D005719 ORTHO05D007030 5.3e-167 591.7 492 60.8
Ca_15541_v3 Cicer arietinum L. HOM05D005719 ORTHO05D007030 1.3e-165 587.0 489 66.7
Actinidia19605 Actinidia chinensis HOM05D005719 ORTHO05D007030 3.8e-165 585.5 492 61.6
MD08G1208600 Malus domestica HOM05D005719 ORTHO05D007030 1.1e-164 583.9 497 60.4
Thecc.08G076500 Theobroma cacao HOM05D005719 ORTHO05D007030 1.9e-164 583.2 485 60.8
Gohir.A05G217800 Gossypium hirsutum HOM05D005719 ORTHO05D007030 3.2e-164 582.4 483 61.7
Gorai.009G226700 Gossypium raimondii HOM05D005719 ORTHO05D007030 4.2e-164 582.0 483 62.1
Prupe.1G540100 Prunus persica HOM05D005719 ORTHO05D007030 4.2e-164 582.0 497 60.6
CiPaw.08G058000 Carya illinoinensis HOM05D005719 ORTHO05D007030 1.6e-163 580.1 487 62.0
CANSAT21G2028 Cannabis sativa HOM05D005719 ORTHO05D007030 2.1e-163 579.7 491 61.9
MD15G1392600 Malus domestica HOM05D005719 ORTHO05D007030 5.1e-162 575.1 497 59.8
Manes.18G055200 Manihot esculenta HOM05D005719 ORTHO05D007030 1.5e-161 573.5 492 60.6
Haze_22505 Corylus avellana HOM05D005719 ORTHO05D007030 1.9e-161 573.2 515 59.2
RcHm_v2.0_Chr7g0233191 Rosa chinensis HOM05D005719 ORTHO05D007030 3.3e-161 572.4 503 59.8
Sabra02G0085500 Salix brachista HOM05D005719 ORTHO05D007030 4.3e-161 572.0 492 61.0
Gohir.D05G219700 Gossypium hirsutum HOM05D005719 ORTHO05D007030 1.3e-160 570.5 483 61.5
CiPaw.07G161600 Carya illinoinensis HOM05D005719 ORTHO05D007030 1.2e-158 563.9 465 63.0
TAR628G1450 Trochodendron aralioides HOM05D005719 ORTHO05D007030 1.2e-158 563.9 493 59.8
GSVIVG01009231001 Vitis vinifera HOM05D005719 ORTHO05D007030 2.0e-158 563.1 451 63.9
ECA240G4523 Erigeron canadensis HOM05D005719 ORTHO05D007030 1.4e-156 557.0 496 59.7
Hma1.2p1_0010F.1_g006360 Hydrangea macrophylla HOM05D005719 ORTHO05D007030 2.5e-156 556.2 488 60.2
FvH4_5g33860 Fragaria vesca HOM05D005719 ORTHO05D007030 5.5e-156 555.1 501 58.1
Cc10_g08220 Coffea canephora HOM05D005719 ORTHO05D007030 6.7e-154 548.1 495 56.8
Cfa013832 Carpinus fangiana HOM05D000446 ORTHO05D000321 2.5e-153 546.2 475 60.6
HanXRQChr03g0065451 Helianthus annuus HOM05D005719 ORTHO05D007030 4.3e-153 545.4 491 58.5
Sc02g0008400 Simmondsia chinensis HOM05D005719 ORTHO05D007030 1.3e-152 543.9 487 57.7
ClCG11G014800 Citrullus lanatus HOM05D005719 ORTHO05D007030 1.6e-152 543.5 487 57.1
Ciclev10000979m.g Citrus clementina HOM05D005719 ORTHO05D007030 1.6e-152 543.5 484 58.3
Lsat_1_v5_gn_7_55820 Lactuca sativa HOM05D005719 ORTHO05D007030 2.9e-149 532.7 505 56.0
PGR031G2819 Punica granatum HOM05D005719 ORTHO05D007030 2.9e-149 532.7 481 59.5
Eucgr.F02170 Eucalyptus grandis HOM05D005719 ORTHO05D007030 1.4e-148 530.4 493 58.4
EL10Ac1g02246 Beta vulgaris HOM05D005719 ORTHO05D007030 1.6e-147 526.9 488 57.6
CsaV3_3G048210 Cucumis sativus L. HOM05D005719 ORTHO05D007030 1.6e-147 526.9 487 56.3
Sed0009724 Sechium edule HOM05D005719 ORTHO05D007030 2.7e-147 526.2 449 59.7
PSO700G0171 Papaver somniferum HOM05D005719 ORTHO05D007030 4.6e-147 525.4 479 57.2
FAN08G1402 Fragaria x ananassa HOM05D005719 ORTHO05D007030 3.0e-146 522.7 569 51.0
Oeu035376.1 Olea europaea HOM05D005719 ORTHO05D007030 5.1e-146 521.9 486 54.7
COL.COLO4_35322 Corchorus olitorius HOM05D005719 ORTHO05D007030 6.7e-146 521.5 484 57.4
TAR381G0820 Trochodendron aralioides HOM05D005719 ORTHO05D007030 1.1e-145 520.8 434 60.4
Nitab4.5_0001608g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 4.3e-145 518.8 491 56.6
Duzib041G0544 Durio zibethinus HOM05D005719 ORTHO05D007030 9.7e-145 517.7 484 57.0
Atru.chr13.942 Acer truncatum HOM05D005719 ORTHO05D007030 2.6e-142 509.6 486 56.4
Migut.C00296 Erythranthe guttata HOM05D005719 ORTHO05D007030 3.4e-142 509.2 490 53.9
Hund05222 Selenicereus undatus HOM05D005719 ORTHO05D007030 1.3e-141 507.3 492 56.3
Sopen02g003330 Solanum pennellii HOM05D005719 ORTHO05D007030 1.7e-141 506.9 497 54.9
Thhalv10004086m.g Eutrema salsugineum HOM05D005719 ORTHO05D007030 3.8e-141 505.8 486 54.5
MSTRG.25002 Avicennia marina HOM05D005719 ORTHO05D007030 1.4e-140 503.8 497 53.9
PSO761G0268 Papaver somniferum HOM05D005719 ORTHO05D007030 2.5e-140 503.1 496 54.0
Cpa.g.sc177.3 Carica papaya HOM05D005719 ORTHO05D007030 4.2e-140 502.3 407 60.7
Solyc02g014380.3 Solanum lycopersicum HOM05D005719 ORTHO05D007030 5.5e-140 501.9 497 54.1
DCAR_014675 Daucus carota HOM05D005719 ORTHO05D007030 1.2e-139 500.7 477 55.1
Sp2g17320 Schrenkiella parvula HOM05D005719 ORTHO05D007030 4.7e-139 498.8 482 53.7
BcaC06g30902 Brassica carinata HOM05D005719 ORTHO05D007030 7.9e-139 498.0 485 54.2
THA.LOC104805699 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 1.8e-138 496.9 487 54.2
THA.LOC104823811 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 2.6e-137 493.0 489 53.0
FAN18G0583 Fragaria x ananassa HOM05D005719 ORTHO05D007030 1.5e-134 483.8 433 57.7
Carub.0005s0719 Capsella rubella HOM05D005719 ORTHO05D007030 1.0e-133 481.1 483 53.2
CARHR286650 Cardamine hirsuta HOM05D005719 ORTHO05D007030 2.2e-133 479.9 493 52.1
AL5G18300 Arabidopsis lyrata HOM05D005719 ORTHO05D007030 8.5e-133 478.0 487 53.0
BcaC06g33632 Brassica carinata HOM05D005719 ORTHO05D007030 1.6e-131 473.8 486 51.6
C07p37630 Brassica napus HOM05D005719 ORTHO05D007030 2.1e-131 473.4 486 51.6
CAN.G1751.8 Capsicum annuum HOM05D005719 ORTHO05D007030 2.1e-131 473.4 518 50.6
AT3G28670 Arabidopsis thaliana HOM05D005719 ORTHO05D007030 1.4e-130 470.7 488 51.6
Manes.05G187400 Manihot esculenta HOM05D005719 ORTHO05D007030 3.0e-130 469.5 385 61.0
BolC7t44279H Brassica oleracea HOM05D005719 ORTHO05D007030 5.2e-130 468.8 487 51.5
Aa31LG2G4530 Aethionema arabicum HOM05D005719 ORTHO05D007030 1.5e-129 467.2 484 52.5
unitig_749.g13864 Utricularia gibba HOM05D005719 ORTHO05D000442 2.0e-129 466.8 498 50.8
A06p40410 Brassica napus HOM05D005719 ORTHO05D007030 4.4e-129 465.7 487 50.9
BraA06t26959Z Brassica rapa HOM05D005719 ORTHO05D007030 4.4e-129 465.7 487 50.9
Dinv44886 Davidia involucrata HOM05D005719 ORTHO05D007030 2.8e-128 463.0 393 61.8
Rhsim07G0214600 Rhododendron simsii HOM05D005719 ORTHO05D007030 4.8e-128 462.2 361 63.4
MBI16_g44752_MAGBIO Magnolia biondii HOM05D005719 ORTHO05D007030 5.3e-127 458.8 435 55.2
Nitab4.5_0000681g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 1.0e-125 454.5 495 51.5
AUR62035419 Chenopodium quinoa HOM05D005719 ORTHO05D007030 8.5e-125 451.4 546 49.5
CAN.G1921.11 Capsicum annuum HOM05D005719 ORTHO05D007030 4.2e-124 449.1 496 50.2
SGA_v2.0_scaffold14G07072 Striga asiatica HOM05D005719 ORTHO05D007030 9.7e-121 438.0 524 47.5
Nn1g05685 Nelumbo nucifera HOM05D005719 ORTHO05D007030 1.4e-119 434.1 494 51.8
PGSC0003DMG400019103 Solanum tuberosum HOM05D005719 ORTHO05D007030 1.4e-114 417.5 496 49.0
HPP92_028121 Vanilla planifolia HOM05D005719 ORTHO05D007030 4.8e-112 409.1 489 44.4
HPP92_020868 Vanilla planifolia HOM05D005719 ORTHO05D007030 2.4e-111 406.8 489 44.2
MELO3C003498.2 Cucumis melo HOM05D005719 ORTHO05D007030 3.5e-110 402.9 358 58.4
Ah.00g000110 Amaranthus hybridus HOM05D005719 ORTHO05D007030 7.7e-110 401.7 397 53.4
Peaxi162Scf01397g00011 Petunia axillaris HOM05D005719 ORTHO05D007030 8.6e-109 398.3 357 57.7
Os08g0101400 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 1.4e-98 364.4 479 43.8
SalBow7G1913 Salvia bowleyana HOM05D005719 ORTHO05D007030 5.8e-97 359.0 395 49.4
CDE07G0720 Ceratophyllum demersum HOM05D005719 ORTHO05D007030 2.3e-93 347.1 486 43.4
Actinidia29649 Actinidia chinensis HOM05D005719 ORTHO05D007030 5.2e-90 335.9 351 52.7
PGSC0003DMG400019007 Solanum tuberosum HOM05D005719 ORTHO05D007030 4.4e-89 332.8 498 43.2
Potri.002G108700 Populus trichocarpa HOM05D005719 ORTHO05D007030 8.6e-85 318.5 250 62.8
Pp3c26_6510 Physcomitrium patens HOM05D005719 ORTHO05D007030 8.1e-75 285.4 501 37.3
Mapoly0053s0027 Marchantia polymorpha HOM05D005719 ORTHO05D007030 1.8e-66 257.7 427 36.8
TAR381G0292 Trochodendron aralioides HOM05D005719 ORTHO05D007030 3.8e-64 250.0 235 59.6
AUR62035705 Chenopodium quinoa HOM05D005719 ORTHO05D007030 4.9e-64 249.6 286 50.0
Os10g0188900 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 6.6e-61 239.2 273 49.5
TAR381G1016 Trochodendron aralioides HOM05D005719 ORTHO05D007030 2.6e-57 227.3 185 61.1
HanXRQChr16g0499811 Helianthus annuus HOM05D005719 ORTHO05D007030 2.4e-55 220.7 359 40.7
Lju279A4T8 Lonicera japonica HOM05D005719 ORTHO05D007030 3.2e-55 220.3 170 62.9
SMO118G0237 Selaginella moellendorffii HOM05D005719 ORTHO05D007030 1.9e-52 211.1 413 35.6
Zm00001eb198670 Zea mays HOM05D005719 ORTHO05D007030 7.4e-52 209.1 275 42.2
BcaB04g19478 Brassica carinata HOM05D005719 ORTHO05D007030 3.0e-45 187.2 277 41.5
ATR0144G003 Amborella trichopoda HOM05D005719 ORTHO05D007030 5.8e-41 172.9 231 45.0
Lju170A15T23 Lonicera japonica HOM05D005719 ORTHO05D007030 1.4e-39 168.3 108 72.2
Duzib116G0315 Durio zibethinus HOM05D005719 ORTHO05D007030 2.7e-38 164.1 135 60.7
AUR62035707 Chenopodium quinoa HOM05D005719 ORTHO05D007030 6.7e-37 159.5 137 59.1
AagrBONN_evm.TU.Sc2ySwM_369.438 Anthoceros agrestis HOM05D005719 ORTHO05D007030 1.9e-36 157.9 278 37.1
Hund16029 Selenicereus undatus HOM05D005719 ORTHO05D007030 1.7e-32 144.8 263 38.0
Oeu035375.1 Olea europaea HOM05D005719 ORTHO05D007030 2.9e-32 144.1 170 47.1
ATR0800G070 Amborella trichopoda HOM05D005719 ORTHO05D007030 1.1e-31 142.1 130 52.3
CBR_g38241 Chara braunii HOM05D005719 ORTHO05D007030 2.5e-31 141.0 374 28.1
SEGI_36882 Sequoiadendron giganteum HOM05D005719 ORTHO05D007030 1.3e-24 118.6 140 47.9
Peaxi162Scf01397g00010 Petunia axillaris HOM05D005719 ORTHO05D007030 9.4e-23 112.5 136 44.9
COL.COLO4_23153 Corchorus olitorius HOM05D005719 ORTHO05D007030 6.7e-21 106.3 164 43.9
Lju170A15T24 Lonicera japonica HOM05D005719 ORTHO05D007030 1.3e-19 102.1 109 55.0
Cre12.g551000 Chlamydomonas reinhardtii HOM05D005719 ORTHO05D007030 6.5e-16 89.7 533 21.8
SEGI_23985 Sequoiadendron giganteum HOM05D005719 ORTHO05D007030 7.4e-12 76.3 106 36.8
Lju279C4T1 Lonicera japonica HOM05D005719 ORTHO05D007030 3.2e-07 60.8 109 40.4


User provided reference genes

Program Settings