Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0064681 Lupinus albus HOM05D001656 ORTHO05D005043 0.0e+00 1124.8 558 100.0
Glyma.04G088400 Glycine max HOM05D001656 ORTHO05D005043 7.4e-290 1000.0 559 88.2
arahy.Tifrunner.gnm1.ann1.AQ9I9J Arachis hypogaea HOM05D001656 ORTHO05D005043 2.2e-286 988.4 560 86.2
Medtr3g110710 Medicago truncatula HOM05D001656 ORTHO05D005043 2.9e-286 988.0 557 87.3
Lj1g0025512 Lotus japonicus HOM05D001656 ORTHO05D005043 6.5e-286 986.9 557 87.6
Ca_15555_v3 Cicer arietinum L. HOM05D001656 ORTHO05D005043 1.9e-285 985.3 558 86.9
arahy.Tifrunner.gnm1.ann1.UN376R Arachis hypogaea HOM05D001656 ORTHO05D005043 2.5e-285 984.9 560 85.9
VMungo1309G0971 Vigna mungo HOM05D001656 ORTHO05D005043 2.5e-285 984.9 557 86.7
Phvul.009G114000 Phaseolus vulgaris HOM05D001656 ORTHO05D005043 2.3e-283 978.4 558 85.8
TPR.G12406 Trifolium pratense HOM05D001656 ORTHO05D005043 4.5e-279 964.1 558 84.8
QL12p040536 Quercus lobata HOM05D001656 ORTHO05D005043 7.2e-277 956.8 558 83.5
Thecc.08G080000 Theobroma cacao HOM05D001656 ORTHO05D005043 1.3e-273 946.0 557 83.1
Duzib041G0753 Durio zibethinus HOM05D001656 ORTHO05D005043 1.1e-272 943.0 559 82.5
Gohir.D05G217900 Gossypium hirsutum HOM05D001656 ORTHO05D005043 2.0e-271 938.7 559 81.6
CANSAT25G3831 Cannabis sativa HOM05D001656 ORTHO05D005043 4.5e-271 937.6 559 82.3
Cpa.g.sc160.9 Carica papaya HOM05D001656 ORTHO05D005043 4.5e-271 937.6 556 81.5
Cfa020711 Carpinus fangiana HOM05D001656 ORTHO05D005043 7.7e-271 936.8 555 83.1
Haze_19016 Corylus avellana HOM05D001656 ORTHO05D005043 2.2e-270 935.3 554 83.0
Gohir.A05G214600 Gossypium hirsutum HOM05D001656 ORTHO05D005043 8.5e-270 933.3 559 81.2
Gorai.009G224700 Gossypium raimondii HOM05D001656 ORTHO05D005043 8.5e-270 933.3 559 81.0
Eucgr.F00471 Eucalyptus grandis HOM05D001656 ORTHO05D005043 4.2e-269 931.0 559 79.4
COL.COLO4_35356 Corchorus olitorius HOM05D001656 ORTHO05D005043 8.8e-267 923.3 565 80.0
CAN.G1801.4 Capsicum annuum HOM05D001656 ORTHO05D005043 1.5e-266 922.5 557 79.5
Duzib093G1672 Durio zibethinus HOM05D001656 ORTHO05D005043 5.7e-266 920.6 548 81.9
TWI56G0239 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 1.7e-265 919.1 559 79.2
Manes.18G053600 Manihot esculenta HOM05D001656 ORTHO05D005043 2.8e-265 918.3 557 79.5
Sed0025136 Sechium edule HOM05D001656 ORTHO05D005043 2.8e-265 918.3 557 80.6
Potri.019G077600 Populus trichocarpa HOM05D001656 ORTHO05D005043 1.1e-264 916.4 553 79.2
TAR381G0234 Trochodendron aralioides HOM05D001656 ORTHO05D005043 1.4e-264 916.0 557 79.5
CiPaw.15G153300 Carya illinoinensis HOM05D001656 ORTHO05D005043 1.8e-264 915.6 557 80.1
GSVIVG01009259001 Vitis vinifera HOM05D001656 ORTHO05D005043 1.2e-263 912.9 557 79.2
Ciclev10000739m.g Citrus clementina HOM05D001656 ORTHO05D005043 2.6e-263 911.8 557 79.4
Solyc04g077040.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 4.5e-263 911.0 558 79.2
PGSC0003DMG400004938 Solanum tuberosum HOM05D001656 ORTHO05D005043 4.5e-263 911.0 558 79.2
CsaV3_6G036230 Cucumis sativus L. HOM05D001656 ORTHO05D005043 1.0e-262 909.8 557 80.6
TWI36G0349 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 1.7e-262 909.1 556 79.5
Cc10_g08000 Coffea canephora HOM05D001656 ORTHO05D005043 6.5e-262 907.1 557 78.6
Sabra19G0088700 Salix brachista HOM05D001656 ORTHO05D005043 8.5e-262 906.7 557 77.7
vmacro21383 Vaccinium macrocarpon HOM05D001656 ORTHO05D005043 3.2e-261 904.8 557 79.2
Nitab4.5_0006011g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 2.1e-260 902.1 574 77.2
Actinidia10250 Actinidia chinensis HOM05D001656 ORTHO05D005043 2.7e-260 901.7 557 78.8
Actinidia19273 Actinidia chinensis HOM05D001656 ORTHO05D005043 1.0e-259 899.8 557 78.3
Nitab4.5_0003791g0030 Nicotiana tabacum HOM05D001656 ORTHO05D005043 1.8e-259 899.0 558 78.9
PGR083G1861 Punica granatum HOM05D001656 ORTHO05D005043 1.8e-259 899.0 557 77.0
Atru.chr13.919 Acer truncatum HOM05D001656 ORTHO05D005043 2.3e-259 898.7 557 78.6
THA.LOC104799841 Tarenaya hassleriana HOM05D001656 ORTHO05D005043 3.0e-259 898.3 559 77.6
SalBow7G3472 Salvia bowleyana HOM05D001656 ORTHO05D005043 5.2e-259 897.5 557 77.2
Migut.C00423 Erythranthe guttata HOM05D001656 ORTHO05D005043 8.8e-259 896.7 557 77.6
MBI16_g26737_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 2.6e-258 895.2 555 77.7
Lsat_1_v5_gn_2_121140 Lactuca sativa HOM05D001656 ORTHO05D005043 4.4e-258 894.4 560 77.5
Ah.11g038980 Amaranthus hybridus HOM05D001656 ORTHO05D005043 9.7e-258 893.3 556 76.1
ClCG08G008920 Citrullus lanatus HOM05D001656 ORTHO05D005043 1.7e-257 892.5 557 80.1
Aqoxy5G02659 Aquilegia oxysepala HOM05D001656 ORTHO05D005043 1.8e-256 889.0 554 77.4
Carub.0008s0951 Capsella rubella HOM05D001656 ORTHO05D005043 1.8e-256 889.0 559 77.5
DCAR_020038 Daucus carota HOM05D001656 ORTHO05D005043 3.1e-256 888.3 559 78.0
Rhsim06G0067500 Rhododendron simsii HOM05D001656 ORTHO05D005043 3.1e-256 888.3 557 77.9
SpUn0011_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 5.3e-256 887.5 559 77.1
SpUn0057_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 5.3e-256 887.5 559 77.1
SpUn0134_0020 Schrenkiella parvula HOM05D001656 ORTHO05D005043 5.3e-256 887.5 559 77.1
AL8G23490 Arabidopsis lyrata HOM05D001656 ORTHO05D005043 9.1e-256 886.7 559 76.9
Hma1.2p1_1078F.1_g254805 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 1.6e-255 885.9 558 76.7
MSTRG.915 Avicennia marina HOM05D001656 ORTHO05D005043 5.9e-255 884.0 557 76.7
AUR62034954 Chenopodium quinoa HOM05D001656 ORTHO05D005043 7.7e-255 883.6 559 77.1
Nn6g32050 Nelumbo nucifera HOM05D001656 ORTHO05D005043 7.7e-255 883.6 559 77.1
Lj4A79T57 Lonicera japonica HOM05D001656 ORTHO05D005043 1.0e-254 883.2 557 76.3
Lj4C747T6 Lonicera japonica HOM05D001656 ORTHO05D005043 2.2e-254 882.1 576 74.7
AUR62035764 Chenopodium quinoa HOM05D001656 ORTHO05D005043 2.9e-254 881.7 559 76.9
AT5G49650 Arabidopsis thaliana HOM05D001656 ORTHO05D005043 1.5e-253 879.4 559 76.2
Sopen00g004570 Solanum pennellii HOM05D001656 ORTHO05D005043 1.9e-253 879.0 537 79.5
BcaC01g01862 Brassica carinata HOM05D001656 ORTHO05D005043 4.2e-253 877.9 559 76.2
Dinv22032 Davidia involucrata HOM05D001656 ORTHO05D005043 4.2e-253 877.9 525 82.3
PSO447G0306 Papaver somniferum HOM05D001656 ORTHO05D005043 7.2e-253 877.1 557 76.1
Thhalv10013140m.g Eutrema salsugineum HOM05D001656 ORTHO05D005043 2.7e-252 875.2 559 75.5
Oeu035948.1 Olea europaea HOM05D001656 ORTHO05D005043 5.2e-251 870.9 557 75.8
FvH4_5g33550 Fragaria vesca HOM05D001656 ORTHO05D005043 6.8e-251 870.5 560 75.2
A06p20550 Brassica napus HOM05D001656 ORTHO05D005043 2.0e-250 869.0 565 75.4
BcaB01g00958 Brassica carinata HOM05D001656 ORTHO05D005043 9.8e-250 866.7 560 75.7
Nitab4.5_0010814g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 9.8e-250 866.7 586 72.7
C03p71250 Brassica napus HOM05D001656 ORTHO05D005043 3.7e-249 864.8 577 73.7
BolC3t19406H Brassica oleracea HOM05D001656 ORTHO05D005043 4.8e-249 864.4 565 74.9
RcHm_v2.0_Chr7g0232371 Rosa chinensis HOM05D001656 ORTHO05D005043 4.8e-249 864.4 560 74.6
Aa31LG3G8940 Aethionema arabicum HOM05D001656 ORTHO05D005043 3.1e-248 861.7 572 74.7
Solyc04g077030.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 3.1e-248 861.7 575 73.2
CAN.G1801.5 Capsicum annuum HOM05D001656 ORTHO05D005043 1.6e-247 859.4 557 73.8
Oeu046408.1 Olea europaea HOM05D001656 ORTHO05D005043 5.0e-246 854.4 533 78.0
Prupe.1G542700 Prunus persica HOM05D001656 ORTHO05D005043 3.3e-245 851.7 558 74.2
ECA247G3818 Erigeron canadensis HOM05D001656 ORTHO05D005043 7.2e-245 850.5 556 74.5
MD15G1398600 Malus domestica HOM05D001656 ORTHO05D005043 9.5e-245 850.1 558 74.0
Peaxi162Scf01174g00119 Petunia axillaris HOM05D001656 ORTHO05D005043 1.2e-244 849.7 514 79.8
Cc10_g08010 Coffea canephora HOM05D001656 ORTHO05D005043 6.8e-243 844.0 564 73.6
Sopen00g003720 Solanum pennellii HOM05D001656 ORTHO05D005043 8.9e-243 843.6 542 74.9
ATR0315G023 Amborella trichopoda HOM05D001656 ORTHO05D005043 1.2e-242 843.2 551 74.2
MSTRG.914 Avicennia marina HOM05D001656 ORTHO05D005043 1.5e-242 842.8 557 73.4
FvH4_5g33570 Fragaria vesca HOM05D001656 ORTHO05D005043 5.7e-242 840.9 559 73.0
Hund05241 Selenicereus undatus HOM05D001656 ORTHO05D005043 2.2e-241 839.0 604 70.7
HanXRQChr02g0046991 Helianthus annuus HOM05D001656 ORTHO05D005043 2.8e-241 838.6 538 75.5
CDE02G2348 Ceratophyllum demersum HOM05D001656 ORTHO05D005043 5.4e-240 834.3 552 73.6
Zm00001eb109880 Zea mays HOM05D001656 ORTHO05D005043 5.4e-240 834.3 557 72.4
DCAR_009544 Daucus carota HOM05D001656 ORTHO05D005043 9.2e-240 833.6 556 73.2
Os07g0640200 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 1.2e-239 833.2 557 72.0
MD08G1210700 Malus domestica HOM05D001656 ORTHO05D005043 4.5e-239 831.2 558 72.4
MELO3C019781.2 Cucumis melo HOM05D001656 ORTHO05D005043 1.9e-237 825.9 568 74.1
SGA_v2.0_scaffold14G07067 Striga asiatica HOM05D001656 ORTHO05D005043 1.0e-235 820.1 552 72.8
ECA232G0787 Erigeron canadensis HOM05D001656 ORTHO05D005043 2.6e-234 815.5 553 71.8
RcHm_v2.0_Chr7g0232401 Rosa chinensis HOM05D001656 ORTHO05D005043 4.1e-232 808.1 540 72.8
EL10Ac1g02312 Beta vulgaris HOM05D001656 ORTHO05D005043 7.0e-232 807.4 549 71.2
Nitab4.5_0003791g0040 Nicotiana tabacum HOM05D001656 ORTHO05D005043 2.7e-231 805.4 602 67.9
Hund05240 Selenicereus undatus HOM05D001656 ORTHO05D005043 3.5e-231 805.1 554 71.3
RcHm_v2.0_Chr7g0232391 Rosa chinensis HOM05D001656 ORTHO05D005043 4.6e-231 804.7 562 70.3
Manes.05G186400 Manihot esculenta HOM05D001656 ORTHO05D005043 1.2e-228 796.6 490 78.2
SEGI_21864 Sequoiadendron giganteum HOM05D001656 ORTHO05D005043 2.9e-225 785.4 557 68.6
FAN18G4580 Fragaria x ananassa HOM05D001656 ORTHO05D005043 2.1e-223 779.2 666 61.0
EL10Ac1g02313 Beta vulgaris HOM05D001656 ORTHO05D005043 5.6e-221 771.2 559 68.9
FAN18G2419 Fragaria x ananassa HOM05D001656 ORTHO05D003489 2.8e-220 768.8 544 70.2
PSO210G2052 Papaver somniferum HOM05D001656 ORTHO05D005043 1.7e-217 759.6 488 75.2
FAN08G0520 Fragaria x ananassa HOM05D001656 ORTHO05D003489 3.0e-214 748.8 544 69.3
Nn5g30719 Nelumbo nucifera HOM05D001656 ORTHO05D005043 1.2e-212 743.4 447 79.6
Os12g0633000 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 4.0e-211 738.4 559 64.9
Pp3c13_15890 Physcomitrium patens HOM05D001656 ORTHO05D005043 1.3e-206 723.4 549 61.9
FAN08G2664 Fragaria x ananassa HOM05D001656 ORTHO05D005043 4.0e-203 711.8 563 64.5
Psat5g091440 Pisum sativum HOM05D001656 ORTHO05D005043 6.0e-199 698.0 391 86.7
MBI16_g05037_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 4.2e-184 648.7 433 74.1
Pp3c4_10480 Physcomitrium patens HOM05D001656 ORTHO05D005043 1.0e-182 644.0 554 55.1
Mapoly0152s0012 Marchantia polymorpha HOM05D001656 ORTHO05D005043 3.0e-182 642.5 544 57.7
Sc26g0004310 Simmondsia chinensis HOM05D001656 ORTHO05D005043 5.1e-182 641.7 391 79.3
SMO339G0045 Selaginella moellendorffii HOM05D001656 ORTHO05D005043 8.2e-172 607.8 551 57.4
Sc08g0003410 Simmondsia chinensis HOM05D001656 ORTHO05D005043 3.4e-170 602.4 391 74.2
AagrBONN_evm.TU.Sc2ySwM_228.1076 Anthoceros agrestis HOM05D001656 ORTHO05D005043 2.7e-167 592.8 549 54.8
Pp3c4_10497 Physcomitrium patens HOM05D001656 ORTHO05D005043 4.7e-159 565.5 490 54.9
Dinv44906 Davidia involucrata HOM05D001656 ORTHO05D005043 3.1e-155 552.7 322 82.0
Hma1.2p1_1281F.1_g272610 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 2.3e-142 510.0 292 82.5
Oeu034830.1 Olea europaea HOM05D001656 ORTHO05D005043 1.5e-141 507.3 308 79.9
CARHR293240 Cardamine hirsuta HOM05D001656 ORTHO05D005043 3.5e-138 496.1 322 73.6
FAN04G1176 Fragaria x ananassa HOM05D001656 ORTHO05D005043 6.5e-137 491.9 339 70.8
unitig_736.g22951 Utricularia gibba HOM05D001656 ORTHO05D005043 5.9e-130 468.8 321 70.1
Oeu035949.1 Olea europaea HOM05D001656 ORTHO05D005043 1.0e-118 431.4 268 78.0
AUR62034953 Chenopodium quinoa HOM05D001656 ORTHO05D005043 2.6e-117 426.8 292 70.2
HPP92_028451 Vanilla planifolia HOM05D001656 ORTHO05D005043 3.9e-113 412.9 273 73.6
SpUn0078_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 1.6e-106 391.0 245 77.1
Oeu011631.2 Olea europaea HOM05D001656 ORTHO05D005043 1.8e-102 377.5 238 77.3
Glyma.06G090401 Glycine max HOM05D001656 ORTHO05D005043 2.4e-99 367.1 240 77.1
HPP92_019867 Vanilla planifolia HOM05D001656 ORTHO05D005043 8.9e-94 348.6 267 66.3
CBR_g40751 Chara braunii HOM05D001656 ORTHO05D005043 2.7e-82 310.5 267 58.1
Gorai.010G169800 Gossypium raimondii HOM05D001656 ORTHO05D005043 2.6e-53 214.2 138 74.6
unitig_736.g22950 Utricularia gibba HOM05D001656 ORTHO05D005043 1.0e-52 212.2 140 71.4
Gohir.D06G145701 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.3e-52 211.8 137 73.7
Gohir.D13G037000 Gossypium hirsutum HOM05D001656 ORTHO05D005043 2.9e-52 210.7 139 73.4
Gorai.013G041400 Gossypium raimondii HOM05D001656 ORTHO05D005043 3.8e-52 210.3 139 72.7
Atru.chr7.541 Acer truncatum HOM05D001656 ORTHO05D005043 5.0e-52 209.9 180 61.1
Gorai.010G172000 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.4e-46 191.8 128 71.9
Dinv26408 Davidia involucrata HOM05D001656 ORTHO05D005043 1.5e-35 155.2 98 74.5
Dinv14696 Davidia involucrata HOM05D001656 ORTHO05D005043 1.0e-33 149.1 116 61.2
Atru.chr13.2595 Acer truncatum HOM05D001656 ORTHO05D005043 1.6e-26 125.2 106 63.2
Cc11_g07750 Coffea canephora HOM05D001656 ORTHO05D005043 4.8e-23 113.6 71 70.4
Cc01_g04230 Coffea canephora HOM05D001656 ORTHO05D005043 5.4e-22 110.2 63 79.4
Cc04_g15120 Coffea canephora HOM05D001656 ORTHO05D005043 9.1e-22 109.4 63 77.8
Cc02_g27750 Coffea canephora HOM05D001656 ORTHO05D005043 1.6e-21 108.6 63 76.2
Gohir.D08G147150 Gossypium hirsutum HOM05D001656 ORTHO05D005043 9.4e-19 99.4 63 76.2
Gorai.004G152700 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.6e-18 98.6 63 74.6
CBR_g50937 Chara braunii HOM05D001656 ORTHO05D005043 3.0e-17 94.4 244 27.0
ECA247G1681 Erigeron canadensis HOM05D000257 ORTHO05D008527 5.2e-17 93.6 62 71.0
HanXRQChr08g0210401 Helianthus annuus HOM05D001656 ORTHO05D005043 2.6e-16 91.3 57 68.4
Cre07.g321100 Chlamydomonas reinhardtii HOM05D001656 ORTHO05D014814 5.7e-16 90.1 491 25.1
Cc08_g09760 Coffea canephora HOM05D001656 ORTHO05D005043 3.1e-14 84.3 54 72.2
MCO10G102 Micromonas commoda HOM05D001656 ORTHO05D014814 4.1e-14 84.0 501 25.0
RcHm_v2.0_Chr2g0168121 Rosa chinensis HOM05D004344 ORTHO05D021344 2.8e-10 71.2 54 55.6
Thecc.03G047200 Theobroma cacao HOM05D000075 ORTHO05D408647 2.0e-08 65.1 64 64.1
FvH4_5g33600 Fragaria vesca HOM05D001656 ORTHO05D005043 6.4e-07 60.1 49 59.2
FAN18G3130 Fragaria x ananassa HOM05D001656 ORTHO05D005043 6.4e-07 60.1 49 59.2
ECA247G1273 Erigeron canadensis HOM05D000004 ORTHO05D000002 1.1e-06 59.3 61 45.9


User provided reference genes

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