Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0064441 Lupinus albus HOM05D004021 ORTHO05D003767 0.0e+00 2338.1 1163 100.0
Lalb_Chr08g0243171 Lupinus albus HOM05D004021 ORTHO05D003767 0.0e+00 1663.3 1180 73.2
Lalb_Chr01g0011141 Lupinus albus HOM05D004021 ORTHO05D003767 0.0e+00 1425.6 1189 64.3
Glyma.04G081800 Glycine max HOM05D004021 ORTHO05D003767 0.0e+00 1320.8 1191 60.6
Glyma.06G083500 Glycine max HOM05D004021 ORTHO05D003767 0.0e+00 1302.0 1197 60.1
VMungo1309G0329 Vigna mungo HOM05D004021 ORTHO05D003767 0.0e+00 1281.9 1198 58.3
Phvul.009G107600 Phaseolus vulgaris HOM05D004021 ORTHO05D003767 0.0e+00 1277.3 1198 58.2
Lalb_Chr11g0064431 Lupinus albus HOM05D004021 ORTHO05D003767 0.0e+00 1248.8 1169 59.4
TPR.G1392 Trifolium pratense HOM05D004021 ORTHO05D003767 0.0e+00 1215.7 1185 57.0
Medtr3g110132 Medicago truncatula HOM05D004021 ORTHO05D003767 0.0e+00 1214.5 1190 57.0
Lj1g0012897 Lotus japonicus HOM05D004021 ORTHO05D003767 0.0e+00 1203.7 1201 56.6
Medtr3g110082 Medicago truncatula HOM05D004021 ORTHO05D003767 0.0e+00 1180.6 1190 56.1
Psat5g022840 Pisum sativum HOM05D004021 ORTHO05D003767 0.0e+00 1152.9 1189 54.2
arahy.Tifrunner.gnm1.ann1.QM1LQ0 Arachis hypogaea HOM05D004021 ORTHO05D003767 0.0e+00 1143.6 1200 54.3
Psat5g022920 Pisum sativum HOM05D004021 ORTHO05D003767 0.0e+00 1139.0 1200 53.8
Ca_15608_v3 Cicer arietinum L. HOM05D004021 ORTHO05D003767 0.0e+00 1128.6 1192 54.5
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 1.5e-156 558.1 1261 35.4
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 3.2e-154 550.4 1277 34.8
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 7.0e-149 532.7 1307 33.4
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 5.7e-143 513.1 1285 34.2
Lalb_Chr24g0396931 Lupinus albus HOM05D004021 ORTHO05D003767 8.3e-142 509.2 1243 33.6
arahy.Tifrunner.gnm1.ann1.E545QA Arachis hypogaea HOM05D004021 ORTHO05D003767 1.6e-140 505.0 1175 34.3
Lalb_Chr14g0372341 Lupinus albus HOM05D004021 ORTHO05D003767 9.4e-138 495.7 1195 33.4
Sabra06G0188100 Salix brachista HOM05D004021 ORTHO05D003767 4.1e-125 453.8 1271 31.2
Potri.006G240500 Populus trichocarpa HOM05D004021 ORTHO05D003767 1.3e-118 432.2 1270 31.4
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 4.9e-118 430.3 1257 32.1
Potri.018G039500 Populus trichocarpa HOM05D004021 ORTHO05D003767 1.2e-116 425.6 1269 29.2
Prupe.1G450900 Prunus persica HOM05D004021 ORTHO05D003767 7.3e-114 416.4 1304 30.1
Sabra18G0039500 Salix brachista HOM05D004021 ORTHO05D003767 2.6e-111 407.9 1264 29.4
RcHm_v2.0_Chr6g0305941 Rosa chinensis HOM05D004021 ORTHO05D003767 3.2e-109 401.0 1292 30.2
FAN20G2231 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.2e-105 389.0 1303 30.2
FAN27G1714 Fragaria x ananassa HOM05D004021 ORTHO05D003767 3.1e-104 384.4 1304 29.6
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 8.9e-104 382.9 1349 28.5
FvH4_2g35880 Fragaria vesca HOM05D004021 ORTHO05D003767 1.2e-103 382.5 1307 29.5
FAN15G2992 Fragaria x ananassa HOM05D004021 ORTHO05D003767 5.8e-103 380.2 1307 29.8
Manes.16G071666 Manihot esculenta HOM05D004021 ORTHO05D003767 7.1e-101 373.2 1272 29.1
Thecc.09G042000 Theobroma cacao HOM05D004021 ORTHO05D003767 8.6e-99 366.3 1288 29.1
Duzib187G0651 Durio zibethinus HOM05D004021 ORTHO05D003767 1.2e-97 362.5 1304 29.3
Duzib150G1483 Durio zibethinus HOM05D004021 ORTHO05D003767 1.2e-95 355.9 1307 28.8
Dinv30267 Davidia involucrata HOM05D004021 ORTHO05D003767 2.6e-95 354.8 1330 27.3
Dinv14242 Davidia involucrata HOM05D004021 ORTHO05D003767 3.4e-95 354.4 1277 29.2
Ciclev10007267m.g Citrus clementina HOM05D004021 ORTHO05D003767 7.8e-92 343.2 1257 27.8
MD08G1116300 Malus domestica HOM05D004021 ORTHO05D003767 9.0e-88 329.7 1266 27.9
Lalb_Chr22g0352261 Lupinus albus HOM05D004021 ORTHO05D003767 1.3e-86 325.9 645 36.0
Gohir.A07G023000 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.7e-86 325.5 1301 27.2
Gorai.001G027600 Gossypium raimondii HOM05D004021 ORTHO05D003767 1.4e-85 322.4 1296 27.4
Gohir.A07G023100 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.3e-83 315.8 1265 27.7
Gohir.D07G026700 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.7e-83 315.5 1270 28.0
Gorai.001G027700 Gossypium raimondii HOM05D004021 ORTHO05D003767 3.0e-83 314.7 1274 28.4
COL.COLO4_18677 Corchorus olitorius HOM05D004021 ORTHO05D003767 6.6e-83 313.5 1263 27.9
Duzib168G2343 Durio zibethinus HOM05D004021 ORTHO05D003767 5.6e-82 310.5 1258 28.5
MD15G1096000 Malus domestica HOM05D004021 ORTHO05D003767 1.8e-75 288.9 1071 29.2
Gohir.D07G026600 Gossypium hirsutum HOM05D004021 ORTHO05D003767 3.7e-73 281.2 1259 26.4
CsaV3_3G048630 Cucumis sativus L. HOM05D004021 ORTHO05D003767 3.2e-69 268.1 1229 26.4
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 9.3e-69 266.5 1304 26.1
Sed0007846 Sechium edule HOM05D004021 ORTHO05D003767 4.6e-68 264.2 1264 27.5
MELO3C003457.2 Cucumis melo HOM05D004021 ORTHO05D003767 3.9e-67 261.2 1234 26.5
Actinidia15734 Actinidia chinensis HOM05D004021 ORTHO05D003767 5.3e-64 250.8 1223 26.2
CSS0009602 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 5.5e-61 240.7 1248 25.9
TWI63G0612 Tripterygium wilfordii HOM05D004021 ORTHO05D003767 9.3e-61 240.0 1201 26.0
ClCG11G015210 Citrullus lanatus HOM05D004021 ORTHO05D003767 5.1e-59 234.2 1254 26.0
ClCG08G012320 Citrullus lanatus HOM05D004021 ORTHO05D003767 9.7e-58 229.9 1262 26.5
Atru.chr7.2140 Acer truncatum HOM05D004021 ORTHO05D003767 8.2e-57 226.9 788 29.3
THA.LOC104799199 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 8.5e-54 216.9 1256 24.8
THA.LOC104814779 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 2.7e-52 211.8 1234 25.7
MELO3C011152.2 Cucumis melo HOM05D004021 ORTHO05D003767 3.0e-51 208.4 1256 25.5
Rhsim07G0152700 Rhododendron simsii HOM05D004021 ORTHO05D003767 2.0e-50 205.7 1219 25.7
Lalb_Chr22g0352251 Lupinus albus HOM05D004021 ORTHO05D003767 9.7e-50 203.4 492 32.5
CsaV3_2G030990 Cucumis sativus L. HOM05D004021 ORTHO05D003767 2.4e-48 198.7 1257 25.1
GSVIVG01035651001 Vitis vinifera HOM05D004021 ORTHO05D003767 5.0e-46 191.0 1007 25.6
Lj8A589G31 Lonicera japonica HOM05D004021 ORTHO05D003767 3.3e-42 178.3 1290 24.6
Sed0002796 Sechium edule HOM05D004021 ORTHO05D003767 3.3e-42 178.3 1245 24.6
Eucgr.C02901 Eucalyptus grandis HOM05D004021 ORTHO05D003767 4.1e-40 171.4 1264 24.6
Aa31LG3G15670 Aethionema arabicum HOM05D004021 ORTHO05D003767 1.2e-39 169.9 1235 24.0
TAR383G0364 Trochodendron aralioides HOM05D004021 ORTHO05D003767 1.5e-39 169.5 847 26.0
Carub.0006s1000 Capsella rubella HOM05D004021 ORTHO05D003767 4.5e-39 167.9 1229 24.6
Nn2g11674 Nelumbo nucifera HOM05D004021 ORTHO05D003767 1.2e-36 159.8 1329 23.0
vmacro05366 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 2.7e-36 158.7 1166 23.8
AL6G22200 Arabidopsis lyrata HOM05D004021 ORTHO05D003767 8.0e-36 157.1 1229 23.5
CAN.G309.87 Capsicum annuum HOM05D004021 ORTHO05D003767 1.4e-35 156.4 1258 24.2
Nitab4.5_0001567g0120 Nicotiana tabacum HOM05D004021 ORTHO05D003767 8.8e-35 153.7 1258 23.8
Sp6g32070 Schrenkiella parvula HOM05D004021 ORTHO05D003767 2.6e-34 152.1 1224 24.8
AT5G11530 Arabidopsis thaliana HOM05D004021 ORTHO05D003767 3.7e-33 148.3 1255 23.4
PGSC0003DMG401018585 Solanum tuberosum HOM05D004021 ORTHO05D003767 3.7e-33 148.3 1246 24.1
Nitab4.5_0000664g0250 Nicotiana tabacum HOM05D004021 ORTHO05D003767 5.3e-32 144.4 1236 22.6
Nitab4.5_0001567g0150 Nicotiana tabacum HOM05D004021 ORTHO05D003767 7.0e-32 144.1 1237 22.9
Aa31LG11G4580 Aethionema arabicum HOM05D004021 ORTHO05D003767 1.6e-31 142.9 1176 22.5
Peaxi162Scf00276g00210 Petunia axillaris HOM05D004021 ORTHO05D003767 3.5e-31 141.7 1288 22.4
CARHR201690 Cardamine hirsuta HOM05D004021 ORTHO05D003767 7.7e-31 140.6 1209 24.2
Nn3g18104 Nelumbo nucifera HOM05D004021 ORTHO05D003767 7.7e-31 140.6 1216 22.9
BcaNung01931 Brassica carinata HOM05D004021 ORTHO05D003767 1.5e-29 136.3 1207 24.4
PGR044G0442 Punica granatum HOM05D004021 ORTHO05D003767 4.2e-29 134.8 1281 23.7
TAR626G0792 Trochodendron aralioides HOM05D004021 ORTHO05D003767 1.2e-28 133.3 532 26.3
Nitab4.5_0000664g0210 Nicotiana tabacum HOM05D004021 ORTHO05D003767 2.1e-28 132.5 1268 22.9
Thhalv10003568m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 3.6e-28 131.7 1227 23.1
Cpa.g.sc7.256 Carica papaya HOM05D004021 ORTHO05D003767 1.4e-27 129.8 387 28.7
DCAR_007709 Daucus carota HOM05D004021 ORTHO05D003767 1.8e-27 129.4 1166 23.7
BolC3t13094H Brassica oleracea HOM05D004021 ORTHO05D003767 1.5e-26 126.3 1210 23.2
A02p01040 Brassica napus HOM05D004021 ORTHO05D003767 2.0e-26 125.9 1157 24.6
Lj4g0004076 Lotus japonicus HOM05D032889 ORTHO05D003767 2.0e-26 125.9 419 28.6
Solyc11g071250.3 Solanum lycopersicum HOM05D004021 ORTHO05D003767 2.0e-26 125.9 1252 23.3
BraA02t05084Z Brassica rapa HOM05D004021 ORTHO05D003767 4.4e-26 124.8 1157 24.5
Glyma.17G195000 Glycine max HOM05D004021 ORTHO05D003767 9.8e-26 123.6 339 30.1
A06p36400 Brassica napus HOM05D004021 ORTHO05D003767 6.3e-25 120.9 1181 23.3
Sopen11g028940 Solanum pennellii HOM05D004021 ORTHO05D003767 6.3e-25 120.9 1255 22.9
BcaC03g13370 Brassica carinata HOM05D004021 ORTHO05D003767 7.0e-24 117.5 1201 24.6
C02p05090 Brassica napus HOM05D004021 ORTHO05D003767 7.0e-24 117.5 1201 24.6
BraA03t09842Z Brassica rapa HOM05D004021 ORTHO05D003767 1.2e-23 116.7 1203 22.8
BolC2t06463H Brassica oleracea HOM05D004021 ORTHO05D003767 5.9e-23 114.4 1192 25.0
Eucgr.E03518 Eucalyptus grandis HOM05D004021 ORTHO05D003767 3.8e-22 111.7 582 26.6
MBI01_g30860_MAGBIO Magnolia biondii HOM05D004021 ORTHO05D003767 1.1e-21 110.2 1314 22.8
Cpa.g.sc7.255 Carica papaya HOM05D004021 ORTHO05D003767 1.5e-21 109.8 433 26.8
CSS0003638 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 1.9e-21 109.4 1248 21.8
Dinv30474 Davidia involucrata HOM05D004021 ORTHO05D003767 1.9e-21 109.4 507 26.8
BraA06t26563Z Brassica rapa HOM05D004021 ORTHO05D003767 2.5e-21 109.0 1202 23.4
BcaNung03924 Brassica carinata HOM05D004021 ORTHO05D003767 5.5e-21 107.8 1213 22.7
BolC7t44742H Brassica oleracea HOM05D004021 ORTHO05D003767 7.2e-21 107.5 1213 22.7
BcaB01g05477 Brassica carinata HOM05D004021 ORTHO05D003767 9.4e-21 107.1 1204 22.9
C07p42110 Brassica napus HOM05D004021 ORTHO05D003767 1.2e-20 106.7 1213 22.6
Lalb_Chr14g0372311 Lupinus albus HOM05D004021 ORTHO05D003767 1.0e-19 103.6 701 23.4
Hund03406 Selenicereus undatus HOM05D012164 ORTHO05D003767 1.4e-19 103.2 1318 22.8
Dinv38014 Davidia involucrata HOM05D004021 ORTHO05D003767 8.8e-19 100.5 576 25.5
Cpa.g.sc7.254 Carica papaya HOM05D004021 ORTHO05D003767 7.5e-18 97.4 93 51.6
Oeu031555.1 Olea europaea HOM05D004021 ORTHO05D003767 9.8e-18 97.1 1210 21.7
vmacro18883 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 9.8e-18 97.1 1193 21.1
PSO782G1327 Papaver somniferum HOM05D004021 ORTHO05D003767 2.8e-17 95.5 1047 23.8
Lj8P589T23 Lonicera japonica HOM05D004021 ORTHO05D003767 4.9e-17 94.7 570 25.1
Atru.chr7.2139 Acer truncatum HOM05D004021 ORTHO05D003767 8.3e-17 94.0 272 29.8
FAN09G3084 Fragaria x ananassa HOM05D004021 ORTHO05D003767 8.3e-17 94.0 438 24.9
FAN20G1338 Fragaria x ananassa HOM05D004021 ORTHO05D003767 8.3e-17 94.0 438 24.9
FAN02G4319 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.1e-16 93.6 438 24.9
FAN13G2039 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.4e-16 93.2 255 29.0
FAN20G0872 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.4e-16 93.2 255 29.0
SHI18661 Sapria himalayana HOM05D004021 ORTHO05D003767 1.8e-16 92.8 1123 22.8
EL10Ac2g04051 Beta vulgaris HOM05D012164 ORTHO05D003767 4.1e-16 91.7 1277 21.8
VMungo0647G2380 Vigna mungo HOM05D058389 ORTHO05D003767 2.0e-15 89.4 386 26.7
SGA_v2.0_scaffold163G38081 Striga asiatica HOM05D004021 ORTHO05D003767 4.5e-15 88.2 1158 21.0
Oeu012193.1 Olea europaea HOM05D004021 ORTHO05D003767 3.8e-14 85.1 1205 21.9
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 1.5e-13 83.2 700 23.1
Lj8A589T33 Lonicera japonica HOM05D004021 ORTHO05D003767 3.3e-13 82.0 186 30.1
SGA_v2.0_scaffold169G38653 Striga asiatica HOM05D004021 ORTHO05D003767 4.2e-13 81.6 229 30.6
SalBow4G0344 Salvia bowleyana HOM05D004021 ORTHO05D003767 1.2e-12 80.1 759 23.2
Nitab4.5_0002178g0010 Nicotiana tabacum HOM05D004021 ORTHO05D003767 4.7e-12 78.2 315 27.0
MSTRG.1655 Avicennia marina HOM05D004021 ORTHO05D003767 8.0e-12 77.4 1195 21.8
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 3.0e-11 75.5 151 33.8
TAR626G0813 Trochodendron aralioides HOM05D004021 ORTHO05D003767 5.2e-11 74.7 81 48.1
MSTRG.14021 Avicennia marina HOM05D004021 ORTHO05D003767 1.5e-10 73.2 85 43.5
Nitab4.5_0000500g0270 Nicotiana tabacum HOM05D004021 ORTHO05D003767 5.7e-10 71.2 82 47.6
SalBow1G4226 Salvia bowleyana HOM05D004021 ORTHO05D003767 5.7e-10 71.2 145 32.4
Sc09g0009160 Simmondsia chinensis HOM05D012164 ORTHO05D003767 7.5e-10 70.9 1219 21.2
Aqoxy7G01578 Aquilegia oxysepala HOM05D065736 ORTHO05D038511 1.3e-09 70.1 359 25.9
DCAR_003118 Daucus carota HOM05D004021 ORTHO05D003767 1.3e-09 70.1 79 43.0
AUR62041723 Chenopodium quinoa HOM05D012164 ORTHO05D003767 3.7e-09 68.6 1055 20.3
Migut.A00223 Erythranthe guttata HOM05D004021 ORTHO05D003767 4.9e-09 68.2 120 36.7
unitig_578.g16592 Utricularia gibba HOM05D004021 ORTHO05D003767 4.9e-09 68.2 103 40.8
Phvul.008G216900 Phaseolus vulgaris HOM05D058389 ORTHO05D003767 6.4e-09 67.8 330 25.5
Migut.E01516 Erythranthe guttata HOM05D004021 ORTHO05D003767 8.3e-09 67.4 1159 21.0
Thhalv10015703m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 1.8e-08 66.2 110 35.5
Peaxi162Scf00657g00058 Petunia axillaris HOM05D004021 ORTHO05D003767 1.8e-08 66.2 87 43.7
AUR62009309 Chenopodium quinoa HOM05D012164 ORTHO05D003767 3.2e-08 65.5 58 53.4
Hund19530 Selenicereus undatus HOM05D012164 ORTHO05D003767 1.2e-07 63.5 187 29.9
ATR0315G010 Amborella trichopoda HOM05D004021 ORTHO05D003767 1.6e-07 63.2 57 52.6
Ah.10g035100 Amaranthus hybridus HOM05D012164 ORTHO05D003767 2.0e-07 62.8 59 50.8
BcaNung04838 Brassica carinata HOM05D004021 ORTHO05D003767 3.5e-07 62.0 248 27.4
SEGI_07029 Sequoiadendron giganteum HOM05D004021 ORTHO05D003767 2.9e-06 58.9 111 35.1
CDE05G1483 Ceratophyllum demersum HOM05D050580 ORTHO05D003767 6.6e-06 57.8 98 32.7
ECA233G1986 Erigeron canadensis HOM05D004021 ORTHO05D003767 6.6e-06 57.8 136 33.1
Atru.chr7.2138 Acer truncatum HOM05D004021 ORTHO05D003767 8.6e-06 57.4 92 42.4
Lsat_1_v5_gn_6_64101 Lactuca sativa HOM05D004021 ORTHO05D003767 8.6e-06 57.4 116 33.6


User provided reference genes

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