Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0064431 Lupinus albus HOM05D004021 ORTHO05D003767 0.0e+00 2229.5 1108 100.0
Lalb_Chr08g0243171 Lupinus albus HOM05D004021 ORTHO05D003767 0.0e+00 1288.5 1167 60.2
Lalb_Chr11g0064441 Lupinus albus HOM05D004021 ORTHO05D003767 0.0e+00 1263.8 1169 59.4
Lalb_Chr01g0011141 Lupinus albus HOM05D004021 ORTHO05D003767 0.0e+00 1242.6 1170 58.9
Glyma.04G081800 Glycine max HOM05D004021 ORTHO05D003767 0.0e+00 1117.4 1178 55.0
Glyma.06G083500 Glycine max HOM05D004021 ORTHO05D003767 0.0e+00 1109.4 1188 54.5
Lj1g0012897 Lotus japonicus HOM05D004021 ORTHO05D003767 4.5e-307 1058.1 1209 52.0
Phvul.009G107600 Phaseolus vulgaris HOM05D004021 ORTHO05D003767 7.3e-305 1050.8 1189 51.1
Ca_15608_v3 Cicer arietinum L. HOM05D004021 ORTHO05D003767 4.0e-303 1045.0 1156 53.1
VMungo1309G0329 Vigna mungo HOM05D004021 ORTHO05D003767 6.8e-303 1044.3 1189 51.3
TPR.G1392 Trifolium pratense HOM05D004021 ORTHO05D003767 9.8e-302 1040.4 1188 50.8
Psat5g022920 Pisum sativum HOM05D004021 ORTHO05D003767 1.4e-300 1036.6 1199 50.8
Psat5g022840 Pisum sativum HOM05D004021 ORTHO05D003767 3.9e-298 1028.5 1190 51.3
Medtr3g110132 Medicago truncatula HOM05D004021 ORTHO05D003767 1.6e-296 1023.1 1187 51.1
arahy.Tifrunner.gnm1.ann1.QM1LQ0 Arachis hypogaea HOM05D004021 ORTHO05D003767 4.7e-288 995.0 1185 50.8
Medtr3g110082 Medicago truncatula HOM05D004021 ORTHO05D003767 2.0e-286 989.6 1171 50.5
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 3.5e-134 483.8 1273 33.2
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 7.6e-129 466.1 1287 32.8
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 8.4e-128 462.6 1326 31.3
arahy.Tifrunner.gnm1.ann1.E545QA Arachis hypogaea HOM05D004021 ORTHO05D003767 8.2e-123 446.0 1150 32.2
Lalb_Chr24g0396931 Lupinus albus HOM05D004021 ORTHO05D003767 6.5e-120 436.4 1205 31.8
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 1.2e-118 432.2 1290 30.8
Lalb_Chr14g0372341 Lupinus albus HOM05D004021 ORTHO05D003767 3.3e-116 424.1 1131 31.3
RcHm_v2.0_Chr6g0305941 Rosa chinensis HOM05D004021 ORTHO05D003767 3.9e-109 400.6 1278 30.4
FvH4_2g35880 Fragaria vesca HOM05D004021 ORTHO05D003767 7.7e-105 386.3 1296 29.2
FAN20G2231 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.0e-104 386.0 1295 29.2
FAN27G1714 Fragaria x ananassa HOM05D004021 ORTHO05D003767 3.2e-103 380.9 1299 29.1
FAN15G2992 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.2e-102 379.0 1290 29.3
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 3.6e-102 377.5 1281 29.4
Potri.006G240500 Populus trichocarpa HOM05D004021 ORTHO05D003767 9.1e-98 362.8 1296 29.2
Sabra06G0188100 Salix brachista HOM05D004021 ORTHO05D003767 1.0e-96 359.4 1296 28.6
Thecc.09G042000 Theobroma cacao HOM05D004021 ORTHO05D003767 4.7e-94 350.5 1298 29.4
Prupe.1G450900 Prunus persica HOM05D004021 ORTHO05D003767 4.0e-93 347.4 1269 28.7
Potri.018G039500 Populus trichocarpa HOM05D004021 ORTHO05D003767 4.4e-92 344.0 1296 28.2
Duzib187G0651 Durio zibethinus HOM05D004021 ORTHO05D003767 4.5e-89 334.0 1293 28.3
Duzib150G1483 Durio zibethinus HOM05D004021 ORTHO05D003767 6.5e-88 330.1 1319 28.4
Sabra18G0039500 Salix brachista HOM05D004021 ORTHO05D003767 8.0e-86 323.2 1296 28.2
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 8.8e-85 319.7 1331 27.3
Lalb_Chr22g0352261 Lupinus albus HOM05D004021 ORTHO05D003767 9.8e-84 316.2 596 37.9
Ciclev10007267m.g Citrus clementina HOM05D004021 ORTHO05D003767 1.7e-83 315.5 1270 28.8
Manes.16G071666 Manihot esculenta HOM05D004021 ORTHO05D003767 1.7e-83 315.5 1267 27.8
COL.COLO4_18677 Corchorus olitorius HOM05D004021 ORTHO05D003767 7.2e-79 300.1 1258 29.0
MD08G1116300 Malus domestica HOM05D004021 ORTHO05D003767 3.6e-78 297.7 1226 27.4
Gohir.A07G023000 Gossypium hirsutum HOM05D004021 ORTHO05D003767 5.7e-76 290.4 1271 27.3
Duzib168G2343 Durio zibethinus HOM05D004021 ORTHO05D003767 1.4e-74 285.8 1262 27.3
CsaV3_3G048630 Cucumis sativus L. HOM05D004021 ORTHO05D003767 5.9e-73 280.4 1198 27.5
Dinv30267 Davidia involucrata HOM05D004021 ORTHO05D003767 7.8e-73 280.0 1322 26.6
MELO3C003457.2 Cucumis melo HOM05D004021 ORTHO05D003767 1.3e-72 279.3 1170 27.5
Gohir.A07G023100 Gossypium hirsutum HOM05D004021 ORTHO05D003767 2.5e-71 275.0 1246 27.5
Gorai.001G027600 Gossypium raimondii HOM05D004021 ORTHO05D003767 7.3e-71 273.5 1273 27.2
Dinv14242 Davidia involucrata HOM05D004021 ORTHO05D003767 2.0e-68 265.4 1311 26.5
Gohir.D07G026700 Gossypium hirsutum HOM05D004021 ORTHO05D003767 3.4e-68 264.6 1250 26.7
Gorai.001G027700 Gossypium raimondii HOM05D004021 ORTHO05D003767 5.8e-68 263.8 1249 26.1
MD15G1096000 Malus domestica HOM05D004021 ORTHO05D003767 1.1e-66 259.6 1087 27.0
Sed0007846 Sechium edule HOM05D004021 ORTHO05D003767 2.7e-65 255.0 1244 27.2
TWI63G0612 Tripterygium wilfordii HOM05D004021 ORTHO05D003767 1.9e-63 248.8 1157 26.0
ClCG11G015210 Citrullus lanatus HOM05D004021 ORTHO05D003767 2.5e-63 248.4 1203 26.9
Gohir.D07G026600 Gossypium hirsutum HOM05D004021 ORTHO05D003767 8.9e-61 240.0 1238 25.9
ClCG08G012320 Citrullus lanatus HOM05D004021 ORTHO05D003767 9.2e-58 229.9 1206 26.2
MELO3C011152.2 Cucumis melo HOM05D004021 ORTHO05D003767 4.0e-53 214.5 1197 24.9
CsaV3_2G030990 Cucumis sativus L. HOM05D004021 ORTHO05D003767 1.2e-52 213.0 1199 25.4
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 1.5e-52 212.6 1265 25.1
THA.LOC104799199 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 7.8e-49 200.3 1240 25.5
Nn3g18104 Nelumbo nucifera HOM05D004021 ORTHO05D003767 1.1e-47 196.4 1190 24.4
Rhsim07G0152700 Rhododendron simsii HOM05D004021 ORTHO05D003767 1.9e-47 195.7 1220 25.2
THA.LOC104814779 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 3.3e-47 194.9 1227 24.8
Atru.chr7.2140 Acer truncatum HOM05D004021 ORTHO05D003767 5.6e-47 194.1 789 27.2
Sed0002796 Sechium edule HOM05D004021 ORTHO05D003767 2.8e-46 191.8 1203 23.1
Actinidia15734 Actinidia chinensis HOM05D004021 ORTHO05D003767 1.1e-45 189.9 1200 25.0
CSS0009602 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 4.6e-41 174.5 1256 24.0
GSVIVG01035651001 Vitis vinifera HOM05D004021 ORTHO05D003767 3.0e-40 171.8 997 24.2
Aa31LG3G15670 Aethionema arabicum HOM05D004021 ORTHO05D003767 2.6e-36 158.7 1216 23.1
vmacro05366 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 1.3e-35 156.4 1176 24.2
Lj8A589G31 Lonicera japonica HOM05D004021 ORTHO05D003767 2.2e-35 155.6 1274 22.1
Lalb_Chr22g0352251 Lupinus albus HOM05D004021 ORTHO05D003767 3.8e-35 154.8 490 29.2
Carub.0006s1000 Capsella rubella HOM05D004021 ORTHO05D003767 2.1e-33 149.1 1201 23.9
TAR383G0364 Trochodendron aralioides HOM05D004021 ORTHO05D003767 2.3e-32 145.6 874 25.4
A02p01040 Brassica napus HOM05D004021 ORTHO05D003767 1.1e-31 143.3 1122 25.3
BraA02t05084Z Brassica rapa HOM05D004021 ORTHO05D003767 9.6e-31 140.2 1122 25.1
Eucgr.C02901 Eucalyptus grandis HOM05D004021 ORTHO05D003767 2.1e-30 139.0 1250 23.6
Thhalv10003568m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 3.6e-30 138.3 1198 23.8
BcaC03g13370 Brassica carinata HOM05D004021 ORTHO05D003767 4.8e-30 137.9 1147 25.6
C02p05090 Brassica napus HOM05D004021 ORTHO05D003767 4.8e-30 137.9 1147 25.6
TAR626G0792 Trochodendron aralioides HOM05D004021 ORTHO05D003767 1.1e-29 136.7 562 29.4
AL6G22200 Arabidopsis lyrata HOM05D004021 ORTHO05D003767 1.4e-29 136.3 1221 23.8
PGR044G0442 Punica granatum HOM05D004021 ORTHO05D003767 3.1e-29 135.2 1268 22.5
AT5G11530 Arabidopsis thaliana HOM05D004021 ORTHO05D003767 1.2e-28 133.3 1214 22.7
Nn2g11674 Nelumbo nucifera HOM05D004021 ORTHO05D003767 3.4e-28 131.7 1319 23.2
Sp6g32070 Schrenkiella parvula HOM05D004021 ORTHO05D003767 3.4e-28 131.7 1190 23.4
BolC2t06463H Brassica oleracea HOM05D004021 ORTHO05D003767 5.8e-28 131.0 1122 25.3
Peaxi162Scf00276g00210 Petunia axillaris HOM05D004021 ORTHO05D003767 1.3e-27 129.8 1263 22.6
Nitab4.5_0001567g0120 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.4e-26 126.3 1246 23.8
Nitab4.5_0001567g0150 Nicotiana tabacum HOM05D004021 ORTHO05D003767 5.4e-26 124.4 1220 22.9
Aa31LG11G4580 Aethionema arabicum HOM05D004021 ORTHO05D003767 4.6e-25 121.3 1157 22.0
Nitab4.5_0000664g0210 Nicotiana tabacum HOM05D004021 ORTHO05D003767 7.9e-25 120.6 1242 23.1
CAN.G309.87 Capsicum annuum HOM05D004021 ORTHO05D003767 3.9e-24 118.2 1211 22.9
Nitab4.5_0000664g0250 Nicotiana tabacum HOM05D004021 ORTHO05D003767 3.9e-24 118.2 1248 23.2
BolC3t13094H Brassica oleracea HOM05D004021 ORTHO05D003767 6.7e-24 117.5 1181 23.2
Cpa.g.sc7.256 Carica papaya HOM05D004021 ORTHO05D003767 1.1e-23 116.7 340 29.1
PGSC0003DMG401018585 Solanum tuberosum HOM05D004021 ORTHO05D003767 2.5e-23 115.5 1278 22.3
CARHR201690 Cardamine hirsuta HOM05D004021 ORTHO05D003767 1.3e-22 113.2 1201 22.4
Eucgr.E03518 Eucalyptus grandis HOM05D004021 ORTHO05D003767 1.3e-22 113.2 514 26.8
Hund03406 Selenicereus undatus HOM05D012164 ORTHO05D003767 1.3e-22 113.2 1299 22.2
A06p36400 Brassica napus HOM05D004021 ORTHO05D003767 1.8e-21 109.4 1146 23.4
SHI18661 Sapria himalayana HOM05D004021 ORTHO05D003767 3.1e-21 108.6 1088 23.3
SGA_v2.0_scaffold169G38653 Striga asiatica HOM05D004021 ORTHO05D003767 3.1e-21 108.6 1129 22.9
BolC7t44742H Brassica oleracea HOM05D004021 ORTHO05D003767 4.0e-21 108.2 1189 23.2
C07p42110 Brassica napus HOM05D004021 ORTHO05D003767 6.9e-21 107.5 1189 23.1
BcaNung01931 Brassica carinata HOM05D004021 ORTHO05D003767 9.0e-21 107.1 1156 24.0
BcaNung03924 Brassica carinata HOM05D004021 ORTHO05D003767 2.0e-20 105.9 1189 23.2
FAN09G3084 Fragaria x ananassa HOM05D004021 ORTHO05D003767 3.4e-20 105.1 416 27.2
FAN20G1338 Fragaria x ananassa HOM05D004021 ORTHO05D003767 3.4e-20 105.1 416 27.2
FAN02G4319 Fragaria x ananassa HOM05D004021 ORTHO05D003767 4.5e-20 104.8 416 27.2
Cpa.g.sc7.255 Carica papaya HOM05D004021 ORTHO05D003767 2.2e-19 102.4 426 26.3
Lj4g0004076 Lotus japonicus HOM05D032889 ORTHO05D003767 3.8e-19 101.7 164 35.4
BraA03t09842Z Brassica rapa HOM05D004021 ORTHO05D003767 1.1e-18 100.1 1168 21.8
Oeu031555.1 Olea europaea HOM05D004021 ORTHO05D003767 2.5e-18 99.0 1160 22.1
MSTRG.14021 Avicennia marina HOM05D004021 ORTHO05D003767 3.2e-18 98.6 1157 21.8
BcaB01g05477 Brassica carinata HOM05D004021 ORTHO05D003767 4.2e-18 98.2 1163 23.2
Solyc11g071250.3 Solanum lycopersicum HOM05D004021 ORTHO05D003767 4.2e-18 98.2 1254 21.1
DCAR_007709 Daucus carota HOM05D004021 ORTHO05D003767 1.2e-17 96.7 1105 23.0
MBI01_g30860_MAGBIO Magnolia biondii HOM05D004021 ORTHO05D003767 1.2e-17 96.7 1295 22.2
Sopen11g028940 Solanum pennellii HOM05D004021 ORTHO05D003767 2.1e-17 95.9 1259 21.8
FAN13G2039 Fragaria x ananassa HOM05D004021 ORTHO05D003767 2.7e-17 95.5 279 29.4
Lalb_Chr14g0372311 Lupinus albus HOM05D004021 ORTHO05D003767 4.6e-17 94.7 668 23.7
SGA_v2.0_scaffold163G38081 Striga asiatica HOM05D004021 ORTHO05D003767 7.9e-17 94.0 1133 21.1
BraA06t26563Z Brassica rapa HOM05D004021 ORTHO05D003767 1.0e-16 93.6 1162 22.1
Atru.chr7.2139 Acer truncatum HOM05D004021 ORTHO05D003767 3.0e-16 92.0 268 30.2
SalBow1G4226 Salvia bowleyana HOM05D004021 ORTHO05D003767 3.0e-16 92.0 1163 22.5
MSTRG.1655 Avicennia marina HOM05D004021 ORTHO05D003767 3.9e-16 91.7 1124 22.1
FAN20G0872 Fragaria x ananassa HOM05D004021 ORTHO05D003767 8.7e-16 90.5 255 29.8
Glyma.17G195000 Glycine max HOM05D004021 ORTHO05D003767 1.1e-15 90.1 343 27.1
Cpa.g.sc7.254 Carica papaya HOM05D004021 ORTHO05D003767 2.5e-15 89.0 84 53.6
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 3.3e-15 88.6 675 22.8
Dinv30474 Davidia involucrata HOM05D004021 ORTHO05D003767 1.1e-13 83.6 522 25.5
CSS0003638 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 2.4e-13 82.4 1222 20.7
Migut.E01516 Erythranthe guttata HOM05D004021 ORTHO05D003767 2.4e-13 82.4 1133 21.4
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 6.9e-13 80.9 658 22.8
Oeu012193.1 Olea europaea HOM05D004021 ORTHO05D003767 6.9e-13 80.9 1146 21.6
VMungo0647G2380 Vigna mungo HOM05D058389 ORTHO05D003767 2.6e-12 79.0 346 25.7
Lj8A589T33 Lonicera japonica HOM05D004021 ORTHO05D003767 7.6e-12 77.4 182 33.5
Dinv38014 Davidia involucrata HOM05D004021 ORTHO05D003767 2.9e-11 75.5 561 25.0
PSO782G1327 Papaver somniferum HOM05D004021 ORTHO05D003767 1.9e-10 72.8 347 25.1
SalBow4G0344 Salvia bowleyana HOM05D004021 ORTHO05D003767 7.1e-10 70.9 645 20.9
EL10Ac2g04051 Beta vulgaris HOM05D012164 ORTHO05D003767 7.9e-09 67.4 94 40.4
vmacro18883 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 1.3e-08 66.6 70 45.7
TAR626G0813 Trochodendron aralioides HOM05D004021 ORTHO05D003767 3.0e-08 65.5 97 37.1
Lj8P589T23 Lonicera japonica HOM05D004021 ORTHO05D003767 1.5e-07 63.2 553 22.8
Thhalv10015703m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 2.5e-07 62.4 97 32.0
CDE05G1483 Ceratophyllum demersum HOM05D050580 ORTHO05D003767 7.4e-07 60.8 97 32.0
Nitab4.5_0002178g0010 Nicotiana tabacum HOM05D004021 ORTHO05D003767 2.2e-06 59.3 213 26.8
BcaNung04838 Brassica carinata HOM05D004021 ORTHO05D003767 2.8e-06 58.9 232 27.2
Dinv10761 Davidia involucrata HOM05D024977 ORTHO05D003767 2.8e-06 58.9 77 37.7
Dinv30643 Davidia involucrata HOM05D024977 ORTHO05D003767 2.8e-06 58.9 77 37.7
Nitab4.5_0000500g0270 Nicotiana tabacum HOM05D004021 ORTHO05D003767 4.8e-06 58.2 147 32.0
Sc09g0009160 Simmondsia chinensis HOM05D012164 ORTHO05D003767 4.8e-06 58.2 1052 22.0
AUR62009309 Chenopodium quinoa HOM05D012164 ORTHO05D003767 6.3e-06 57.8 71 40.8
DCAR_003118 Daucus carota HOM05D004021 ORTHO05D003767 6.3e-06 57.8 298 24.2


User provided reference genes

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