Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0064351 Lupinus albus HOM05D001880 ORTHO05D005098 6.7e-114 414.1 216 100.0
Lalb_Chr08g0243251 Lupinus albus HOM05D001880 ORTHO05D005098 4.7e-107 391.3 216 94.0
CANSAT25G1770 Cannabis sativa HOM05D001880 ORTHO05D005098 5.1e-106 387.9 216 92.6
Potri.006G241900 Populus trichocarpa HOM05D001880 ORTHO05D005098 2.6e-105 385.6 216 91.7
Gohir.D08G272200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 9.7e-105 383.6 216 91.7
Gorai.004G290600 Gossypium raimondii HOM05D001880 ORTHO05D005098 9.7e-105 383.6 216 91.7
Glyma.04G080400 Glycine max HOM05D001880 ORTHO05D005098 1.3e-104 383.3 216 91.2
Potri.018G037800 Populus trichocarpa HOM05D001880 ORTHO05D005098 3.7e-104 381.7 216 90.3
arahy.Tifrunner.gnm1.ann1.0TS4QU Arachis hypogaea HOM05D001880 ORTHO05D005098 1.4e-103 379.8 216 89.8
arahy.Tifrunner.gnm1.ann1.I4CW6I Arachis hypogaea HOM05D001880 ORTHO05D005098 1.4e-103 379.8 216 89.8
VMungo1309G0461 Vigna mungo HOM05D001880 ORTHO05D005098 1.4e-103 379.8 215 90.7
ClCG11G014050 Citrullus lanatus HOM05D001880 ORTHO05D005098 2.4e-103 379.0 216 90.7
Gohir.A08G250700 Gossypium hirsutum HOM05D001880 ORTHO05D005098 2.4e-103 379.0 216 90.7
ATR0315G044 Amborella trichopoda HOM05D001880 ORTHO05D005098 3.1e-103 378.6 216 89.8
Phvul.009G106500 Phaseolus vulgaris HOM05D001880 ORTHO05D005098 5.3e-103 377.9 216 90.3
TAR626G0694 Trochodendron aralioides HOM05D001880 ORTHO05D005098 9.1e-103 377.1 216 89.8
MELO3C003579.2 Cucumis melo HOM05D001880 ORTHO05D005098 1.2e-102 376.7 216 90.7
PSO210G6462 Papaver somniferum HOM05D001880 ORTHO05D005098 1.6e-102 376.3 216 88.9
Duzib150G0439 Durio zibethinus HOM05D001880 ORTHO05D005098 2.0e-102 375.9 216 89.8
Glyma.06G082100 Glycine max HOM05D001880 ORTHO05D005098 2.0e-102 375.9 216 89.4
Lalb_Chr23g0269461 Lupinus albus HOM05D001880 ORTHO05D005098 2.0e-102 375.9 216 89.8
Sed0004320 Sechium edule HOM05D001880 ORTHO05D005098 2.0e-102 375.9 216 89.4
THA.LOC104815053 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 2.0e-102 375.9 216 88.4
Lj1g0025868 Lotus japonicus HOM05D001880 ORTHO05D005098 2.6e-102 375.6 220 88.6
Sed0015028 Sechium edule HOM05D001880 ORTHO05D005098 2.6e-102 375.6 216 88.9
CiPaw.08G023800 Carya illinoinensis HOM05D001880 ORTHO05D005098 3.5e-102 375.2 216 89.4
PSO210G1422 Papaver somniferum HOM05D001880 ORTHO05D005098 3.5e-102 375.2 216 88.4
Ciclev10009455m.g Citrus clementina HOM05D001880 ORTHO05D005098 4.5e-102 374.8 216 88.9
CsaV3_3G047450 Cucumis sativus L. HOM05D001880 ORTHO05D005098 4.5e-102 374.8 216 89.8
Aqoxy7G01618 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 7.7e-102 374.0 216 88.0
Manes.16G065900 Manihot esculenta HOM05D001880 ORTHO05D005098 7.7e-102 374.0 216 88.4
TAR383G0375 Trochodendron aralioides HOM05D001880 ORTHO05D005098 7.7e-102 374.0 216 88.9
Duzib187G1109 Durio zibethinus HOM05D001880 ORTHO05D005098 1.0e-101 373.6 216 89.8
Nn3g18068 Nelumbo nucifera HOM05D001880 ORTHO05D005098 1.7e-101 372.9 216 88.4
vmacro07643 Vaccinium macrocarpon HOM05D001880 ORTHO05D005098 1.7e-101 372.9 216 88.0
Eucgr.C01583 Eucalyptus grandis HOM05D001880 ORTHO05D005098 2.2e-101 372.5 216 86.6
Cfa013347 Carpinus fangiana HOM05D001880 ORTHO05D005098 3.8e-101 371.7 215 88.4
Psat0s4721g0040 Pisum sativum HOM05D001880 ORTHO05D005098 6.5e-101 370.9 216 88.0
Atru.chr7.2156 Acer truncatum HOM05D001880 ORTHO05D005098 1.5e-100 369.8 216 87.0
Manes.03G063100 Manihot esculenta HOM05D001880 ORTHO05D005098 1.5e-100 369.8 216 87.5
MD08G1117900 Malus domestica HOM05D001880 ORTHO05D005098 2.5e-100 369.0 216 88.0
AL6G22170 Arabidopsis lyrata HOM05D001880 ORTHO05D005098 3.2e-100 368.6 216 85.2
AT5G11500 Arabidopsis thaliana HOM05D001880 ORTHO05D005098 3.2e-100 368.6 216 85.2
CSS0008123 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 3.2e-100 368.6 216 87.5
CSS0050171 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 3.2e-100 368.6 216 87.5
DCAR_004495 Daucus carota HOM05D001880 ORTHO05D005098 3.2e-100 368.6 216 88.0
Carub.0006s0996 Capsella rubella HOM05D001880 ORTHO05D005098 4.2e-100 368.2 216 85.2
CARHR201720 Cardamine hirsuta HOM05D001880 ORTHO05D005098 4.2e-100 368.2 216 85.2
Sp6g32100 Schrenkiella parvula HOM05D001880 ORTHO05D005098 4.2e-100 368.2 216 85.6
Thecc.09G040200 Theobroma cacao HOM05D001880 ORTHO05D005098 4.2e-100 368.2 216 88.4
HPP92_023949 Vanilla planifolia HOM05D001880 ORTHO05D005098 5.5e-100 367.9 216 85.2
BcaB08g37053 Brassica carinata HOM05D001880 ORTHO05D005098 7.2e-100 367.5 216 85.6
C03p05780 Brassica napus HOM05D001880 ORTHO05D005098 7.2e-100 367.5 216 85.6
BolC3t13091H Brassica oleracea HOM05D001880 ORTHO05D005098 7.2e-100 367.5 216 85.6
Thhalv10014652m.g Eutrema salsugineum HOM05D001880 ORTHO05D005098 7.2e-100 367.5 216 85.2
BcaB01g05480 Brassica carinata HOM05D001880 ORTHO05D005098 9.4e-100 367.1 216 85.2
A03p05050 Brassica napus HOM05D001880 ORTHO05D005098 9.4e-100 367.1 216 85.2
BraA03t09839Z Brassica rapa HOM05D001880 ORTHO05D005098 9.4e-100 367.1 216 85.2
Gohir.D05G049500 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.2e-99 366.7 216 88.0
Medtr3g110022 Medicago truncatula HOM05D001880 ORTHO05D005098 1.2e-99 366.7 216 87.0
DCAR_000746 Daucus carota HOM05D001880 ORTHO05D005098 1.6e-99 366.3 216 86.6
TWI63G1366 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 1.6e-99 366.3 216 88.4
Migut.A00247 Erythranthe guttata HOM05D001880 ORTHO05D005098 2.1e-99 365.9 216 85.6
MD15G1097400 Malus domestica HOM05D001880 ORTHO05D005098 2.1e-99 365.9 216 87.5
HanXRQChr07g0188141 Helianthus annuus HOM05D001880 ORTHO05D005098 2.7e-99 365.5 216 87.0
BcaC04g19219 Brassica carinata HOM05D001880 ORTHO05D005098 3.6e-99 365.2 216 84.7
A10p26250 Brassica napus HOM05D001880 ORTHO05D005098 3.6e-99 365.2 216 84.7
C09p65340 Brassica napus HOM05D001880 ORTHO05D005098 3.6e-99 365.2 216 84.7
BolC9t59360H Brassica oleracea HOM05D001880 ORTHO05D005098 3.6e-99 365.2 216 84.7
BraA10t44682Z Brassica rapa HOM05D001880 ORTHO05D005098 3.6e-99 365.2 216 84.7
CDE05G1188 Ceratophyllum demersum HOM05D001880 ORTHO05D005098 3.6e-99 365.2 216 86.1
Gohir.D07G027400 Gossypium hirsutum HOM05D001880 ORTHO05D005098 3.6e-99 365.2 216 87.5
THA.LOC104799203 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 3.6e-99 365.2 216 86.1
Zm00001eb350500 Zea mays HOM05D001880 ORTHO05D005098 3.6e-99 365.2 216 84.7
BcaC03g13368 Brassica carinata HOM05D001880 ORTHO05D005098 4.7e-99 364.8 216 84.7
Prupe.1G452200 Prunus persica HOM05D001880 ORTHO05D005098 4.7e-99 364.8 227 85.0
Cc08_g09010 Coffea canephora HOM05D001880 ORTHO05D005098 6.1e-99 364.4 216 85.2
COL.COLO4_18693 Corchorus olitorius HOM05D001880 ORTHO05D005098 6.1e-99 364.4 216 88.0
Gorai.009G050800 Gossypium raimondii HOM05D001880 ORTHO05D005098 6.1e-99 364.4 216 87.5
Gohir.A07G023800 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.0e-98 363.6 216 87.0
Hma1.2p1_0422F.1_g150140 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 1.0e-98 363.6 216 86.6
Cpa.g.sc78.78 Carica papaya HOM05D001880 ORTHO05D005098 2.3e-98 362.5 216 85.6
Nn2g11707 Nelumbo nucifera HOM05D001880 ORTHO05D005098 2.3e-98 362.5 216 86.1
Hma1.2p1_0140F.1_g063500 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 3.0e-98 362.1 216 85.6
MSTRG.25891 Avicennia marina HOM05D001880 ORTHO05D005098 4.0e-98 361.7 216 86.1
C02p05070 Brassica napus HOM05D001880 ORTHO05D005098 4.0e-98 361.7 216 83.8
CiPaw.07G206800 Carya illinoinensis HOM05D001880 ORTHO05D005098 4.0e-98 361.7 215 85.1
TWI32G1114 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 4.0e-98 361.7 216 86.1
Gorai.001G028600 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.1e-97 360.1 215 86.0
PGR044G1166 Punica granatum HOM05D001880 ORTHO05D005098 1.5e-97 359.8 216 85.2
Aqoxy7G03843 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 3.3e-97 358.6 216 82.9
CAN.G21.29 Capsicum annuum HOM05D001880 ORTHO05D005098 3.3e-97 358.6 216 83.8
Gohir.A05G048200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 3.3e-97 358.6 216 86.1
Nitab4.5_0007240g0010 Nicotiana tabacum HOM05D001880 ORTHO05D005098 5.7e-97 357.8 216 84.7
Peaxi162Scf00523g00111 Petunia axillaris HOM05D001880 ORTHO05D005098 5.7e-97 357.8 216 84.7
Solyc08g068300.3 Solanum lycopersicum HOM05D001880 ORTHO05D005098 9.7e-97 357.1 216 83.8
Sopen08g022150 Solanum pennellii HOM05D001880 ORTHO05D005098 9.7e-97 357.1 216 83.8
PGSC0003DMG400010834 Solanum tuberosum HOM05D001880 ORTHO05D005098 1.3e-96 356.7 216 83.3
Dinv14228 Davidia involucrata HOM05D001880 ORTHO05D005098 2.2e-96 355.9 216 84.7
Nitab4.5_0000052g0180 Nicotiana tabacum HOM05D001880 ORTHO05D005098 2.8e-96 355.5 214 84.6
MSTRG.1651 Avicennia marina HOM05D001880 ORTHO05D005098 3.7e-96 355.1 216 83.8
unitig_748.g7799 Utricularia gibba HOM05D001880 ORTHO05D005098 6.3e-96 354.4 216 82.4
TPR.G1376 Trifolium pratense HOM05D001880 ORTHO05D005098 5.3e-95 351.3 216 84.3
GSVIVG01035667001 Vitis vinifera HOM05D001880 ORTHO05D005098 2.0e-94 349.4 199 91.0
SGA_v2.0_scaffold163G38091 Striga asiatica HOM05D001880 ORTHO05D005098 2.7e-94 349.0 221 81.9
BcaNung01928 Brassica carinata HOM05D001880 ORTHO05D005098 4.5e-94 348.2 221 81.0
Mapoly0042s0036 Marchantia polymorpha HOM05D001880 ORTHO05D005098 3.2e-92 342.0 216 79.6
SMO134G0016 Selaginella moellendorffii HOM05D001880 ORTHO05D005098 4.2e-92 341.7 216 78.7
SalBow8G4639 Salvia bowleyana HOM05D001880 ORTHO05D005098 5.5e-92 341.3 217 81.6
FvH4_2g36060 Fragaria vesca HOM05D001880 ORTHO05D005098 6.8e-90 334.3 216 81.5
RcHm_v2.0_Chr6g0305791 Rosa chinensis HOM05D001880 ORTHO05D005098 6.8e-90 334.3 216 81.5
Aa31LG3G15700 Aethionema arabicum HOM05D001758 ORTHO05D005969 1.5e-89 333.2 216 80.1
Rhsim03G0046500 Rhododendron simsii HOM05D001880 ORTHO05D005098 4.4e-89 331.6 216 81.0
Hund19544 Selenicereus undatus HOM05D001880 ORTHO05D005098 5.7e-89 331.3 221 78.3
BolC2t06461H Brassica oleracea HOM05D001880 ORTHO05D005098 4.8e-88 328.2 218 77.5
Pp3c9_4250 Physcomitrium patens HOM05D001880 ORTHO05D005098 6.3e-88 327.8 216 76.9
Lj8C597T7 Lonicera japonica HOM05D001880 ORTHO05D005098 8.3e-88 327.4 216 79.2
SalBow4G0117 Salvia bowleyana HOM05D001880 ORTHO05D005098 1.4e-87 326.6 216 80.1
Pp3c9_9290 Physcomitrium patens HOM05D001880 ORTHO05D005098 3.5e-86 322.0 216 75.9
CBR_g39177 Chara braunii HOM05D001880 ORTHO05D005098 1.3e-85 320.1 216 75.0
Os01g0750500 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 1.3e-85 320.1 216 72.7
CBR_g40963 Chara braunii HOM05D001880 ORTHO05D005098 5.0e-85 318.2 216 74.5
ECA246G2183 Erigeron canadensis HOM05D001880 ORTHO05D004730 1.1e-84 317.0 183 86.3
SGA_v2.0_scaffold169G38642 Striga asiatica HOM05D001880 ORTHO05D005098 7.2e-84 314.3 216 75.9
Oeu014654.1 Olea europaea HOM05D001880 ORTHO05D005098 4.0e-82 308.5 216 75.5
QL12p026578 Quercus lobata HOM05D001880 ORTHO05D005098 3.4e-81 305.4 165 91.5
Lsat_1_v5_gn_5_34021 Lactuca sativa HOM05D001880 ORTHO05D005098 3.7e-80 302.0 215 74.4
Ca_15617_v3 Cicer arietinum L. HOM05D001880 ORTHO05D005098 3.1e-79 298.9 165 90.9
Dinv30256 Davidia involucrata HOM05D001880 ORTHO05D005098 4.1e-79 298.5 165 89.7
AUR62009327 Chenopodium quinoa HOM05D001880 ORTHO05D005098 1.2e-78 297.0 216 74.1
Sc09g0009110 Simmondsia chinensis HOM05D001880 ORTHO05D005098 3.5e-78 295.4 276 62.0
FAN27G1491 Fragaria x ananassa HOM05D001880 ORTHO05D005098 1.3e-77 293.5 216 74.1
FAN15G2674 Fragaria x ananassa HOM05D001880 ORTHO05D005098 5.0e-77 291.6 216 73.6
PSO832G1756 Papaver somniferum HOM05D001880 ORTHO05D005098 3.6e-75 285.4 217 70.5
EL10Ac2g04067 Beta vulgaris HOM05D001880 ORTHO05D005098 8.0e-75 284.3 216 71.8
Zm00001eb153360 Zea mays HOM05D001880 ORTHO05D005098 8.9e-74 280.8 217 67.3
Oeu016233.2 Olea europaea HOM05D001880 ORTHO05D005098 7.5e-73 277.7 216 69.0
Gorai.011G152300 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.3e-72 276.9 216 69.0
AUR62023014 Chenopodium quinoa HOM05D000682 ORTHO05D000510 2.9e-72 275.8 220 70.5
Haze_21860 Corylus avellana HOM05D001880 ORTHO05D005098 3.0e-69 265.8 353 48.4
Lj8C602T7 Lonicera japonica HOM05D001880 ORTHO05D005098 1.5e-68 263.5 216 67.6
AagrBONN_evm.TU.Sc2ySwM_228.2603 Anthoceros agrestis HOM05D001880 ORTHO05D005098 1.6e-67 260.0 144 82.6
Sabra18G0038400 Salix brachista HOM05D001880 ORTHO05D005098 1.6e-67 260.0 165 80.6
Rhsim03G0044500 Rhododendron simsii HOM05D001880 ORTHO05D005098 2.3e-66 256.1 180 78.3
Ah.10g035220 Amaranthus hybridus HOM05D001880 ORTHO05D005098 4.0e-66 255.4 217 66.8
MCO11G833 Micromonas commoda HOM05D001880 ORTHO05D005098 1.2e-57 227.3 217 56.2
PRCOL_00004463 Prasinoderma coloniale HOM05D001880 ORTHO05D005098 2.7e-54 216.1 234 53.8
CSS0023199 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 2.4e-47 193.0 264 50.0
Cc00_g02820 Coffea canephora HOM05D001880 ORTHO05D005098 2.4e-47 193.0 108 81.5
Cc03_g15000 Coffea canephora HOM05D001880 ORTHO05D005098 2.4e-47 193.0 108 81.5
MBI04_g19163_MAGBIO Magnolia biondii HOM05D001880 ORTHO05D005098 4.1e-47 192.2 136 77.9
Cre06.g275300 Chlamydomonas reinhardtii HOM05D001880 ORTHO05D005098 7.8e-46 188.0 219 48.4
HPP92_023928 Vanilla planifolia HOM05D001880 ORTHO05D005098 1.1e-42 177.6 135 74.1
Cfa026630 Carpinus fangiana HOM05D004477 ORTHO05D005615 1.3e-40 170.6 204 46.6
HPP92_023929 Vanilla planifolia HOM05D001880 ORTHO05D005098 6.0e-38 161.8 84 85.7
Lj7A706T45 Lonicera japonica HOM05D001880 ORTHO05D005098 2.3e-37 159.8 114 77.2
Sabra06G0189300 Salix brachista HOM05D001880 ORTHO05D005098 5.1e-37 158.7 81 90.1
Pp3c9_8200 Physcomitrium patens HOM05D001880 ORTHO05D005098 6.6e-37 158.3 113 71.7
Os05g0221400 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 2.1e-35 153.3 81 87.7
Lj7A706G42 Lonicera japonica HOM05D001880 ORTHO05D001339 6.2e-35 151.8 186 52.2
Zm00001eb036010 Zea mays HOM05D001880 ORTHO05D005098 1.3e-32 144.1 101 78.2
Zm00001eb052320 Zea mays HOM05D001880 ORTHO05D005098 1.3e-32 144.1 101 78.2
Zm00001eb071380 Zea mays HOM05D001880 ORTHO05D005098 1.3e-32 144.1 101 78.2
Zm00001eb291550 Zea mays HOM05D001880 ORTHO05D005098 1.3e-32 144.1 101 78.2
Zm00001eb391830 Zea mays HOM05D001880 ORTHO05D005098 1.3e-32 144.1 101 78.2
Cc00_g34580 Coffea canephora HOM05D001880 ORTHO05D005098 1.2e-25 120.9 70 72.9
Gorai.011G178000 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.6e-19 100.5 74 81.1
CSS0036439 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 3.1e-18 96.3 63 82.5
Gorai.012G085200 Gossypium raimondii HOM05D001880 ORTHO05D005098 2.9e-16 89.7 68 77.9
Gorai.011G118500 Gossypium raimondii HOM05D001880 ORTHO05D013650 5.3e-10 68.9 39 76.9
Gorai.002G175500 Gossypium raimondii HOM05D001035 ORTHO05D013650 2.0e-09 67.0 39 74.4
SalBow5G0200 Salvia bowleyana HOM05D001880 ORTHO05D355852 1.7e-08 63.9 48 64.6
SalBow8G1849 Salvia bowleyana HOM05D001880 ORTHO05D363534 1.7e-08 63.9 48 64.6
SalBow8G2043 Salvia bowleyana HOM05D001880 ORTHO05D356500 1.7e-08 63.9 48 64.6
SalBow6G5594 Salvia bowleyana HOM05D001880 ORTHO05D357349 6.5e-08 62.0 48 62.5


User provided reference genes

Program Settings