Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0064251 Lupinus albus HOM05D002246 ORTHO05D002308 3.5e-52 208.0 103 100.0
Psat0s709g0120 Pisum sativum HOM05D002246 ORTHO05D002308 2.0e-23 112.5 70 78.6
Lalb_Chr08g0243481 Lupinus albus HOM05D002246 ORTHO05D002308 2.6e-23 112.1 85 72.9
TPR.G12446 Trifolium pratense HOM05D002246 ORTHO05D002308 3.4e-23 111.7 70 78.6
Lj1g0025226 Lotus japonicus HOM05D002246 ORTHO05D002308 7.1e-21 104.0 82 65.9
Glyma.04G077300 Glycine max HOM05D002246 ORTHO05D002308 1.6e-20 102.8 82 64.6
Glyma.06G078400 Glycine max HOM05D002246 ORTHO05D002308 2.1e-20 102.4 70 72.9
Medtr3g109250 Medicago truncatula HOM05D002246 ORTHO05D002308 4.6e-20 101.3 70 71.4
Ca_15637_v3 Cicer arietinum L. HOM05D002246 ORTHO05D002308 6.0e-20 100.9 70 72.9
arahy.Tifrunner.gnm1.ann1.4D0408 Arachis hypogaea HOM05D002246 ORTHO05D002308 1.7e-19 99.4 71 71.8
arahy.Tifrunner.gnm1.ann1.BXVS1E Arachis hypogaea HOM05D002246 ORTHO05D002308 6.6e-19 97.4 71 70.4
Lalb_Chr23g0269251 Lupinus albus HOM05D002246 ORTHO05D002308 4.3e-18 94.7 74 68.9
Migut.A00447 Erythranthe guttata HOM05D002246 ORTHO05D002308 5.6e-18 94.4 59 79.7
SalBow8G3000 Salvia bowleyana HOM05D002246 ORTHO05D002308 1.3e-17 93.2 59 79.7
VMungo1309G2527 Vigna mungo HOM05D002246 ORTHO05D002308 1.6e-17 92.8 82 62.2
CANSAT25G3805 Cannabis sativa HOM05D002246 ORTHO05D002308 1.4e-16 89.7 86 59.3
CAN.G947.14 Capsicum annuum HOM05D002246 ORTHO05D002308 1.4e-16 89.7 70 60.0
Oeu038303.1 Olea europaea HOM05D002246 ORTHO05D002308 2.4e-16 89.0 59 72.9
Oeu008747.1 Olea europaea HOM05D002246 ORTHO05D002308 3.1e-16 88.6 76 59.2
Nitab4.5_0001159g0090 Nicotiana tabacum HOM05D002246 ORTHO05D002308 4.0e-16 88.2 70 60.0
PGSC0003DMG400029373 Solanum tuberosum HOM05D002246 ORTHO05D002308 4.0e-16 88.2 70 58.6
Cc00_g05390 Coffea canephora HOM05D002246 ORTHO05D002308 6.9e-16 87.4 61 70.5
Cc00_g05400 Coffea canephora HOM05D002246 ORTHO05D002308 6.9e-16 87.4 61 70.5
FvH4_2g36490 Fragaria vesca HOM05D002246 ORTHO05D002308 6.9e-16 87.4 71 64.8
FAN27G3459 Fragaria x ananassa HOM05D002246 ORTHO05D002308 6.9e-16 87.4 71 64.8
Rhsim09G0032300 Rhododendron simsii HOM05D002246 ORTHO05D002308 6.9e-16 87.4 68 63.2
Actinidia25740 Actinidia chinensis HOM05D002246 ORTHO05D002308 9.0e-16 87.0 79 57.0
Atru.chr7.2691 Acer truncatum HOM05D002246 ORTHO05D002308 1.2e-15 86.7 62 74.2
FAN20G2778 Fragaria x ananassa HOM05D002246 ORTHO05D002308 1.2e-15 86.7 71 64.8
Manes.16G137700 Manihot esculenta HOM05D002246 ORTHO05D002308 1.5e-15 86.3 50 84.0
Peaxi162Scf00459g00843 Petunia axillaris HOM05D002246 ORTHO05D002308 1.5e-15 86.3 70 60.0
Phvul.009G103300 Phaseolus vulgaris HOM05D002246 ORTHO05D002308 1.5e-15 86.3 82 57.3
Actinidia03336 Actinidia chinensis HOM05D002246 ORTHO05D002308 2.0e-15 85.9 60 71.7
BcaB03g12687 Brassica carinata HOM05D002246 ORTHO05D002308 2.0e-15 85.9 47 89.4
BcaC01g01104 Brassica carinata HOM05D002246 ORTHO05D002308 2.0e-15 85.9 47 89.4
A08p18740 Brassica napus HOM05D002246 ORTHO05D002308 2.0e-15 85.9 47 89.4
C03p88120 Brassica napus HOM05D002246 ORTHO05D002308 2.0e-15 85.9 47 89.4
BolC3t21120H Brassica oleracea HOM05D002246 ORTHO05D002308 2.0e-15 85.9 47 89.4
BraA08t33835Z Brassica rapa HOM05D002246 ORTHO05D002308 2.0e-15 85.9 47 89.4
Thhalv10026164m.g Eutrema salsugineum HOM05D002246 ORTHO05D002308 2.0e-15 85.9 47 89.4
MD15G1104100 Malus domestica HOM05D002246 ORTHO05D002308 2.0e-15 85.9 60 76.7
Nitab4.5_0003963g0020 Nicotiana tabacum HOM05D002246 ORTHO05D002308 2.0e-15 85.9 70 57.1
PGR084G0006 Punica granatum HOM05D002246 ORTHO05D002308 2.0e-15 85.9 83 56.6
PGR142G0571 Punica granatum HOM05D002246 ORTHO05D002308 2.0e-15 85.9 83 56.6
RhsimUnG0033200 Rhododendron simsii HOM05D002246 ORTHO05D002308 2.0e-15 85.9 68 63.2
TAR636G1798 Trochodendron aralioides HOM05D002246 ORTHO05D002308 2.0e-15 85.9 60 75.0
TAR636G3631 Trochodendron aralioides HOM05D002246 ORTHO05D002308 2.0e-15 85.9 60 75.0
BcaC09g51906 Brassica carinata HOM05D002246 ORTHO05D002308 2.6e-15 85.5 81 58.0
C01p07740 Brassica napus HOM05D002246 ORTHO05D002308 2.6e-15 85.5 81 58.0
BolC1t00757H Brassica oleracea HOM05D002246 ORTHO05D002308 2.6e-15 85.5 81 58.0
FAN15G3702 Fragaria x ananassa HOM05D002246 ORTHO05D002308 2.6e-15 85.5 71 63.4
Hma1.2p1_0443F.1_g154010 Hydrangea macrophylla HOM05D002246 ORTHO05D002308 2.6e-15 85.5 70 64.3
Hund19387 Selenicereus undatus HOM05D002246 ORTHO05D002308 2.6e-15 85.5 60 70.0
AT4G31290 Arabidopsis thaliana HOM05D002246 ORTHO05D002308 3.4e-15 85.1 81 58.0
AL7G20790 Arabidopsis lyrata HOM05D002246 ORTHO05D002308 4.4e-15 84.7 81 58.0
BcaNung05316 Brassica carinata HOM05D002246 ORTHO05D002308 4.4e-15 84.7 47 87.2
A01p07010 Brassica napus HOM05D002246 ORTHO05D002308 4.4e-15 84.7 81 56.8
BraA01t00652Z Brassica rapa HOM05D002246 ORTHO05D002308 4.4e-15 84.7 81 56.8
Carub.0007s0927 Capsella rubella HOM05D002246 ORTHO05D002308 4.4e-15 84.7 47 87.2
CARHR239160 Cardamine hirsuta HOM05D002246 ORTHO05D002308 4.4e-15 84.7 47 87.2
Sp7g29140 Schrenkiella parvula HOM05D002246 ORTHO05D002308 4.4e-15 84.7 47 87.2
CSS0001463 Camellia sinensis var. sinensis HOM05D002246 ORTHO05D002308 5.8e-15 84.3 60 76.7
CSS0025097 Camellia sinensis var. sinensis HOM05D002246 ORTHO05D002308 5.8e-15 84.3 60 76.7
CiPaw.07G210000 Carya illinoinensis HOM05D002246 ORTHO05D002308 7.6e-15 84.0 72 63.9
CAN.G1364.6 Capsicum annuum HOM05D002246 ORTHO05D002308 9.9e-15 83.6 70 57.1
Eucgr.C02134 Eucalyptus grandis HOM05D002246 ORTHO05D002308 9.9e-15 83.6 60 71.7
RcHm_v2.0_Chr6g0305381 Rosa chinensis HOM05D002246 ORTHO05D002308 9.9e-15 83.6 74 60.8
Sc06g0001260 Simmondsia chinensis HOM05D002246 ORTHO05D002308 9.9e-15 83.6 77 57.1
SGA_v2.0_scaffold121G33038 Striga asiatica HOM05D002246 ORTHO05D002308 9.9e-15 83.6 56 69.6
Ciclev10009681m.g Citrus clementina HOM05D002246 ORTHO05D002308 1.3e-14 83.2 61 70.5
MD08G1124700 Malus domestica HOM05D002246 ORTHO05D002308 1.3e-14 83.2 49 83.7
SHI21135 Sapria himalayana HOM05D002246 ORTHO05D002308 1.7e-14 82.8 83 51.8
THA.LOC104819923 Tarenaya hassleriana HOM05D002246 ORTHO05D002308 1.7e-14 82.8 48 83.3
Thecc.09G002500 Theobroma cacao HOM05D002246 ORTHO05D002308 1.7e-14 82.8 66 68.2
vmacro00587 Vaccinium macrocarpon HOM05D002246 ORTHO05D002308 1.7e-14 82.8 70 62.9
Aa31LG2G19080 Aethionema arabicum HOM05D002246 ORTHO05D002308 2.2e-14 82.4 47 85.1
MSTRG.25771 Avicennia marina HOM05D002246 ORTHO05D002308 2.2e-14 82.4 57 71.9
Haze_21790 Corylus avellana HOM05D002246 ORTHO05D002308 2.2e-14 82.4 71 62.0
Dinv38808 Davidia involucrata HOM05D002246 ORTHO05D002308 2.9e-14 82.0 71 60.6
Lj8A465T8 Lonicera japonica HOM05D002246 ORTHO05D002308 2.9e-14 82.0 71 60.6
Prupe.1G456300 Prunus persica HOM05D002246 ORTHO05D002308 2.9e-14 82.0 71 63.4
GSVIVG01035568001 Vitis vinifera HOM05D002246 ORTHO05D002308 2.9e-14 82.0 66 69.7
CARHR187150 Cardamine hirsuta HOM05D002246 ORTHO05D002308 3.8e-14 81.6 71 62.0
Dinv37492 Davidia involucrata HOM05D002246 ORTHO05D002308 3.8e-14 81.6 60 71.7
Medtr1g009210 Medicago truncatula HOM05D002246 ORTHO05D002308 4.9e-14 81.3 60 71.7
Potri.018G002900 Populus trichocarpa HOM05D002246 ORTHO05D002308 4.9e-14 81.3 60 71.7
SGA_v2.0_scaffold193G40655 Striga asiatica HOM05D002246 ORTHO05D002308 4.9e-14 81.3 50 80.0
SGA_v2.0_scaffold27G11663 Striga asiatica HOM05D002246 ORTHO05D002308 4.9e-14 81.3 50 80.0
THA.LOC104811222 Tarenaya hassleriana HOM05D002246 ORTHO05D002308 4.9e-14 81.3 55 72.7
Cfa013307 Carpinus fangiana HOM05D002246 ORTHO05D002308 6.4e-14 80.9 71 60.6
SalBow4G1204 Salvia bowleyana HOM05D002246 ORTHO05D002308 6.4e-14 80.9 66 65.2
Solyc12g096320.2 Solanum lycopersicum HOM05D002246 ORTHO05D002308 6.4e-14 80.9 70 55.7
Sopen12g032180 Solanum pennellii HOM05D002246 ORTHO05D002308 6.4e-14 80.9 70 55.7
A09p05920 Brassica napus HOM05D002246 ORTHO05D002308 8.4e-14 80.5 80 56.2
Sp2g21530 Schrenkiella parvula HOM05D002246 ORTHO05D002308 8.4e-14 80.5 54 74.1
Hund03261 Selenicereus undatus HOM05D002246 ORTHO05D002308 8.4e-14 80.5 47 83.0
AUR62020648 Chenopodium quinoa HOM05D002246 ORTHO05D002308 1.1e-13 80.1 73 58.9
AUR62038725 Chenopodium quinoa HOM05D002246 ORTHO05D002308 1.1e-13 80.1 73 58.9
ECA240G0911 Erigeron canadensis HOM05D002246 ORTHO05D002308 1.1e-13 80.1 83 55.4
Sabra18G0003200 Salix brachista HOM05D002246 ORTHO05D002308 1.1e-13 80.1 61 68.9
Nitab4.5_0003259g0080 Nicotiana tabacum HOM05D002246 ORTHO05D002308 1.4e-13 79.7 70 57.1
Nitab4.5_0000025g0090 Nicotiana tabacum HOM05D002246 ORTHO05D002308 1.9e-13 79.3 60 63.3
SalBow7G0718 Salvia bowleyana HOM05D002246 ORTHO05D002308 1.9e-13 79.3 66 65.2
BcaC04g23609 Brassica carinata HOM05D002246 ORTHO05D002308 2.4e-13 79.0 80 55.0
BolC9t53572H Brassica oleracea HOM05D002246 ORTHO05D002308 2.4e-13 79.0 80 55.0
MELO3C003603.2 Cucumis melo HOM05D002246 ORTHO05D002308 2.4e-13 79.0 86 54.7
Thhalv10004888m.g Eutrema salsugineum HOM05D002246 ORTHO05D002308 2.4e-13 79.0 54 72.2
Gohir.A07G000700 Gossypium hirsutum HOM05D002246 ORTHO05D002308 2.4e-13 79.0 61 70.5
Gohir.D07G001100 Gossypium hirsutum HOM05D002246 ORTHO05D002308 2.4e-13 79.0 61 70.5
Gorai.001G000800 Gossypium raimondii HOM05D002246 ORTHO05D002308 2.4e-13 79.0 61 70.5
HanXRQChr03g0082451 Helianthus annuus HOM05D002246 ORTHO05D002308 2.4e-13 79.0 52 73.1
BraA09t36234Z Brassica rapa HOM05D002246 ORTHO05D002308 3.2e-13 78.6 80 55.0
Duzib168G0807 Durio zibethinus HOM05D002246 ORTHO05D002308 3.2e-13 78.6 82 59.8
Gohir.A06G107600 Gossypium hirsutum HOM05D002246 ORTHO05D002308 3.2e-13 78.6 60 71.7
CDE07G2057 Ceratophyllum demersum HOM05D002246 ORTHO05D002308 4.2e-13 78.2 63 66.7
Peaxi162Scf00045g01523 Petunia axillaris HOM05D002246 ORTHO05D002308 4.2e-13 78.2 61 63.9
Aa31LG1G8930 Aethionema arabicum HOM05D002246 ORTHO05D002308 5.4e-13 77.8 46 82.6
CDE04G2060 Ceratophyllum demersum HOM05D000163 ORTHO05D000219 5.4e-13 77.8 51 72.5
AL6G38220 Arabidopsis lyrata HOM05D002246 ORTHO05D002308 7.1e-13 77.4 54 72.2
DCAR_000675 Daucus carota HOM05D002246 ORTHO05D002308 7.1e-13 77.4 78 50.0
Solyc08g006150.3 Solanum lycopersicum HOM05D002246 ORTHO05D002308 7.1e-13 77.4 61 60.7
Sopen08g002110 Solanum pennellii HOM05D002246 ORTHO05D002308 7.1e-13 77.4 61 60.7
PGSC0003DMG400009544 Solanum tuberosum HOM05D002246 ORTHO05D002308 7.1e-13 77.4 61 60.7
TAR383G0783 Trochodendron aralioides HOM05D002246 ORTHO05D002308 7.1e-13 77.4 60 70.0
Carub.0006s2400 Capsella rubella HOM05D002246 ORTHO05D002308 9.3e-13 77.0 54 72.2
CsaV3_3G047260 Cucumis sativus L. HOM05D002246 ORTHO05D002308 9.3e-13 77.0 64 62.5
TWI63G0060 Tripterygium wilfordii HOM05D002246 ORTHO05D002308 9.3e-13 77.0 50 78.0
HPP92_010799 Vanilla planifolia HOM05D002246 ORTHO05D002308 9.3e-13 77.0 47 78.7
AT5G26220 Arabidopsis thaliana HOM05D002246 ORTHO05D002308 1.2e-12 76.6 54 72.2
BcaB04g19743 Brassica carinata HOM05D002246 ORTHO05D002308 1.2e-12 76.6 80 55.0
FAN11G1736 Fragaria x ananassa HOM05D002246 ORTHO05D002308 1.2e-12 76.6 50 74.0
HanXRQChr13g0411561 Helianthus annuus HOM05D002246 ORTHO05D002308 1.2e-12 76.6 52 73.1
Gohir.D06G109900 Gossypium hirsutum HOM05D002246 ORTHO05D002308 1.6e-12 76.3 60 70.0
Gorai.010G124700 Gossypium raimondii HOM05D002246 ORTHO05D002308 1.6e-12 76.3 60 70.0
Lsat_1_v5_gn_5_61180 Lactuca sativa HOM05D002246 ORTHO05D002308 1.6e-12 76.3 79 54.4
EL10Ac2g03686 Beta vulgaris HOM05D002246 ORTHO05D002308 2.1e-12 75.9 60 63.3
QL12p025826 Quercus lobata HOM05D002246 ORTHO05D002308 2.1e-12 75.9 91 53.8
BcaNung03973 Brassica carinata HOM05D002246 ORTHO05D002308 3.5e-12 75.1 54 70.4
C09p06500 Brassica napus HOM05D002246 ORTHO05D002308 3.5e-12 75.1 80 52.5
DCAR_004563 Daucus carota HOM05D002246 ORTHO05D002308 6.0e-12 74.3 54 64.8
MBI16_g37218_MAGBIO Magnolia biondii HOM05D002246 ORTHO05D002308 6.0e-12 74.3 60 70.0
Sed0006378 Sechium edule HOM05D002246 ORTHO05D002308 6.0e-12 74.3 86 52.3
Aqoxy7G02667 Aquilegia oxysepala HOM05D002246 ORTHO05D002308 7.8e-12 73.9 47 76.6
ClCG08G012540 Citrullus lanatus HOM05D002246 ORTHO05D002308 7.8e-12 73.9 60 68.3
MELO3C011173.2 Cucumis melo HOM05D002246 ORTHO05D002308 7.8e-12 73.9 60 68.3
CsaV3_2G031240 Cucumis sativus L. HOM05D002246 ORTHO05D002308 1.0e-11 73.6 61 65.6
HPP92_017380 Vanilla planifolia HOM05D002246 ORTHO05D002308 1.0e-11 73.6 58 67.2
ATR0626G166 Amborella trichopoda HOM05D002246 ORTHO05D002308 3.0e-11 72.0 48 72.9
Potri.006G279000 Populus trichocarpa HOM05D002246 ORTHO05D002308 3.0e-11 72.0 60 63.3
ClCG05G026340 Citrullus lanatus HOM05D002246 ORTHO05D002308 3.9e-11 71.6 83 51.8
Sed0024396 Sechium edule HOM05D002246 ORTHO05D002308 5.1e-11 71.2 60 63.3
BcaNung02810 Brassica carinata HOM05D002246 ORTHO05D002308 6.6e-11 70.9 49 71.4
SEGI_04447 Sequoiadendron giganteum HOM05D002246 ORTHO05D002308 1.1e-10 70.1 51 66.7
ATR0681G269 Amborella trichopoda HOM05D002246 ORTHO05D002308 3.3e-10 68.6 48 72.9
PSO063G1987 Papaver somniferum HOM05D002246 ORTHO05D002308 4.3e-10 68.2 60 63.3
PSO170G2987 Papaver somniferum HOM05D002246 ORTHO05D002308 4.3e-10 68.2 60 63.3
Zm00001eb351560 Zea mays HOM05D002246 ORTHO05D002308 5.6e-10 67.8 72 50.0
Os02g0465900 Oryza sativa ssp. japonica HOM05D002246 ORTHO05D002308 9.6e-10 67.0 78 46.2
Sabra06G0216300 Salix brachista HOM05D002246 ORTHO05D002308 9.6e-10 67.0 90 46.7
Zm00001eb203900 Zea mays HOM05D002246 ORTHO05D002308 2.8e-09 65.5 84 45.2
Pp3c12_5220 Physcomitrium patens HOM05D002246 ORTHO05D002308 6.2e-09 64.3 49 63.3
Lsat_1_v5_gn_8_16500 Lactuca sativa HOM05D002246 ORTHO05D002308 8.1e-09 63.9 48 66.7
Zm00001eb203890 Zea mays HOM05D002246 ORTHO05D002308 1.1e-08 63.5 47 66.0
Pp3c4_15710 Physcomitrium patens HOM05D002246 ORTHO05D002308 1.4e-08 63.2 49 63.3
Zm00001eb220190 Zea mays HOM05D002246 ORTHO05D002308 3.1e-08 62.0 47 63.8
Pp3c3_22490 Physcomitrium patens HOM05D002246 ORTHO05D002308 6.9e-08 60.8 64 50.0
unitig_46.g18224 Utricularia gibba HOM05D002246 ORTHO05D002308 6.9e-08 60.8 65 50.8
MD02G1097700 Malus domestica HOM05D002246 ORTHO05D002308 2.6e-07 58.9 34 85.3
Glyma.13G080900 Glycine max HOM05D002246 ORTHO05D002308 3.4e-07 58.5 47 61.7
CANSAT54G0211 Cannabis sativa HOM05D002246 ORTHO05D002308 1.3e-06 56.6 47 61.7
CANSAT54G0793 Cannabis sativa HOM05D002246 ORTHO05D002308 1.3e-06 56.6 47 61.7
Lj8A433T5 Lonicera japonica HOM05D002246 ORTHO05D002308 1.7e-06 56.2 30 86.7
Pp3c10_14650 Physcomitrium patens HOM05D002246 ORTHO05D002308 1.7e-06 56.2 45 62.2
Medtr1g030430 Medicago truncatula HOM05D002246 ORTHO05D002308 2.2e-06 55.8 47 59.6
Psat6g042040 Pisum sativum HOM05D002246 ORTHO05D002308 2.9e-06 55.5 45 60.0
Lj1g0027756 Lotus japonicus HOM05D002246 ORTHO05D002308 3.8e-06 55.1 45 60.0
MBI06_g20716_MAGBIO Magnolia biondii HOM05D002246 ORTHO05D002308 3.8e-06 55.1 52 53.8
DCAR_017411 Daucus carota HOM05D002246 ORTHO05D002308 6.4e-06 54.3 47 59.6
TPR.G25804 Trifolium pratense HOM05D002246 ORTHO05D002308 6.4e-06 54.3 45 57.8
arahy.Tifrunner.gnm1.ann1.265AFI Arachis hypogaea HOM05D002246 ORTHO05D002308 8.4e-06 53.9 47 59.6
arahy.Tifrunner.gnm1.ann1.JFC39M Arachis hypogaea HOM05D002246 ORTHO05D002308 8.4e-06 53.9 47 59.6
Ca_12611_v3 Cicer arietinum L. HOM05D002246 ORTHO05D002308 8.4e-06 53.9 45 57.8
Phvul.008G163900 Phaseolus vulgaris HOM05D002246 ORTHO05D002308 8.4e-06 53.9 47 59.6
SMO347G0205 Selaginella moellendorffii HOM05D002246 ORTHO05D002308 8.4e-06 53.9 59 54.2
VMungo0647G1803 Vigna mungo HOM05D002246 ORTHO05D002308 8.4e-06 53.9 47 59.6


User provided reference genes

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