Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0064231 Lupinus albus HOM05D003201 ORTHO05D008914 2.0e-169 599.0 300 100.0
Glyma.06G078200 Glycine max HOM05D003201 ORTHO05D008914 4.6e-121 438.3 278 77.7
TPR.G12401 Trifolium pratense HOM05D003201 ORTHO05D008914 4.6e-121 438.3 272 81.2
Psat5g023760 Pisum sativum HOM05D003201 ORTHO05D008914 2.3e-120 436.0 272 79.4
Glyma.04G077000 Glycine max HOM05D003201 ORTHO05D008914 3.0e-120 435.6 296 75.0
Lj1g0010900 Lotus japonicus HOM05D003201 ORTHO05D008914 3.8e-115 418.7 298 72.8
Ca_15643_v3 Cicer arietinum L. HOM05D000163 ORTHO05D000219 4.8e-110 401.7 265 75.1
arahy.Tifrunner.gnm1.ann1.6BLG7S Arachis hypogaea HOM05D003201 ORTHO05D008914 6.3e-110 401.4 300 69.7
arahy.Tifrunner.gnm1.ann1.N5J460 Arachis hypogaea HOM05D003201 ORTHO05D008914 1.1e-109 400.6 285 72.3
VMungo1309G0938 Vigna mungo HOM05D003201 ORTHO05D008914 6.9e-109 397.9 370 58.9
Cpa.g.sc30.52 Carica papaya HOM05D003201 ORTHO05D008914 7.9e-97 357.8 279 62.7
QL12p025722 Quercus lobata HOM05D003201 ORTHO05D008914 3.9e-96 355.5 274 66.1
CiPaw.07G210300 Carya illinoinensis HOM05D003201 ORTHO05D008914 8.8e-96 354.4 276 65.6
CsaV3_2G031270 Cucumis sativus L. HOM05D003201 ORTHO05D008914 1.1e-93 347.4 281 63.0
Manes.02G219100 Manihot esculenta HOM05D003201 ORTHO05D008914 1.1e-93 347.4 273 65.6
Phvul.009G102800 Phaseolus vulgaris HOM05D003201 ORTHO05D008914 2.4e-93 346.3 203 79.8
ClCG08G012570 Citrullus lanatus HOM05D003201 ORTHO05D008914 5.3e-93 345.1 272 65.4
GSVIVG01035604001 Vitis vinifera HOM05D003201 ORTHO05D008914 1.5e-92 343.6 272 64.3
MELO3C011176.2 Cucumis melo HOM05D003201 ORTHO05D008914 2.6e-92 342.8 271 64.6
MD15G1105100 Malus domestica HOM05D003201 ORTHO05D008914 3.8e-91 339.0 275 63.6
Thecc.03G318200 Theobroma cacao HOM05D003201 ORTHO05D008914 1.1e-90 337.4 276 64.5
CSS0009288 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008914 4.2e-90 335.5 271 63.5
Duzib084G1420 Durio zibethinus HOM05D003201 ORTHO05D008914 4.2e-90 335.5 279 63.1
CSS0050223 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008914 5.5e-90 335.1 271 63.5
Gohir.D12G205000 Gossypium hirsutum HOM05D003201 ORTHO05D008914 1.2e-89 334.0 276 63.4
CANSAT54G1971 Cannabis sativa HOM05D003201 ORTHO05D008914 3.6e-89 332.4 272 64.3
Hund03239 Selenicereus undatus HOM05D003201 ORTHO05D008914 3.6e-89 332.4 269 63.9
RcHm_v2.0_Chr6g0305311 Rosa chinensis HOM05D003201 ORTHO05D008914 6.1e-89 331.6 276 62.3
Gorai.008G219900 Gossypium raimondii HOM05D003201 ORTHO05D008914 1.0e-88 330.9 274 61.3
Gohir.A12G202300 Gossypium hirsutum HOM05D003201 ORTHO05D008914 3.0e-88 329.3 276 62.3
CAN.G964.23 Capsicum annuum HOM05D003201 ORTHO05D008914 1.1e-87 327.4 271 61.6
Peaxi162Scf00314g00636 Petunia axillaris HOM05D003201 ORTHO05D008914 2.0e-87 326.6 271 61.3
FvH4_2g36540 Fragaria vesca HOM05D003201 ORTHO05D008914 2.6e-87 326.2 284 60.2
Nitab4.5_0000391g0210 Nicotiana tabacum HOM05D003201 ORTHO05D008914 2.6e-87 326.2 279 59.1
Prupe.1G456900 Prunus persica HOM05D003201 ORTHO05D008914 5.7e-87 325.1 270 62.6
EL10Ac8g19259 Beta vulgaris HOM05D003201 ORTHO05D008914 1.7e-86 323.6 269 60.6
Solyc05g012940.4 Solanum lycopersicum HOM05D003201 ORTHO05D008914 1.7e-86 323.6 272 60.7
FAN15G0760 Fragaria x ananassa HOM05D003201 ORTHO05D008914 2.2e-86 323.2 284 59.9
Nitab4.5_0012553g0020 Nicotiana tabacum HOM05D003201 ORTHO05D008914 2.2e-86 323.2 269 60.6
Actinidia29333 Actinidia chinensis HOM05D003201 ORTHO05D008914 2.8e-86 322.8 272 61.4
SalBow8G4280 Salvia bowleyana HOM05D003201 ORTHO05D008914 2.8e-86 322.8 274 60.6
Ciclev10016172m.g Citrus clementina HOM05D003201 ORTHO05D008914 4.8e-86 322.0 279 61.3
Migut.E00069 Erythranthe guttata HOM05D003201 ORTHO05D008914 4.8e-86 322.0 271 59.4
PGSC0003DMG402028340 Solanum tuberosum HOM05D003201 ORTHO05D008914 8.2e-86 321.2 273 61.2
SGA_v2.0_scaffold45G16974 Striga asiatica HOM05D003201 ORTHO05D008914 8.2e-86 321.2 268 59.0
AUR62028026 Chenopodium quinoa HOM05D003201 ORTHO05D008914 1.1e-85 320.9 271 60.5
Dinv37468 Davidia involucrata HOM05D003201 ORTHO05D008914 3.1e-85 319.3 210 72.4
Sopen05g007740 Solanum pennellii HOM05D003201 ORTHO05D008914 3.1e-85 319.3 279 59.1
Thhalv10025951m.g Eutrema salsugineum HOM05D003201 ORTHO05D008914 5.3e-85 318.5 274 58.8
C01p14340 Brassica napus HOM05D003201 ORTHO05D008914 9.1e-85 317.8 267 58.8
BolC1t01393H Brassica oleracea HOM05D000280 ORTHO05D004510 1.2e-84 317.4 266 58.6
BraA01t01146Z Brassica rapa HOM05D003201 ORTHO05D008914 2.6e-84 316.2 266 59.0
Aqoxy7G00979 Aquilegia oxysepala HOM05D003201 ORTHO05D008914 4.5e-84 315.5 281 59.4
Eucgr.E04307 Eucalyptus grandis HOM05D003201 ORTHO05D008914 4.5e-84 315.5 274 60.6
Cc11_g12550 Coffea canephora HOM05D003201 ORTHO05D008914 1.0e-83 314.3 273 61.2
BcaNung03501 Brassica carinata HOM05D003201 ORTHO05D008914 1.3e-83 313.9 269 58.4
C07p50860 Brassica napus HOM05D000936 ORTHO05D008914 1.3e-83 313.9 269 58.4
BolC7t45584H Brassica oleracea HOM05D000936 ORTHO05D008914 1.3e-83 313.9 269 58.0
THA.LOC104811993 Tarenaya hassleriana HOM05D003201 ORTHO05D008914 1.3e-83 313.9 270 58.9
TWI18G0285 Tripterygium wilfordii HOM05D003201 ORTHO05D008914 1.7e-83 313.5 270 59.6
BcaC06g30651 Brassica carinata HOM05D003201 ORTHO05D008914 2.9e-83 312.8 269 58.4
AT4G20325 Arabidopsis thaliana HOM05D003201 ORTHO05D008914 3.8e-83 312.4 274 58.4
A03p52400 Brassica napus HOM05D000936 ORTHO05D008914 3.8e-83 312.4 271 59.4
Sp7g18670 Schrenkiella parvula HOM05D003201 ORTHO05D008914 5.0e-83 312.0 269 58.0
A01p12040 Brassica napus HOM05D003201 ORTHO05D008914 6.5e-83 311.6 266 58.6
BraA03t14319Z Brassica rapa HOM05D003201 ORTHO05D008914 1.1e-82 310.8 269 57.6
Carub.0007s2085 Capsella rubella HOM05D003201 ORTHO05D008914 2.5e-82 309.7 269 59.1
Aa31LG6G2740 Aethionema arabicum HOM05D003201 ORTHO05D008914 7.2e-82 308.1 268 60.1
AL7G33570 Arabidopsis lyrata HOM05D003201 ORTHO05D008914 7.2e-82 308.1 269 59.1
CARHR227150 Cardamine hirsuta HOM05D003201 ORTHO05D008914 1.2e-81 307.4 273 58.6
DCAR_002183 Daucus carota HOM05D003201 ORTHO05D008914 3.0e-80 302.8 269 59.1
Atru.BG.264.p Acer truncatum HOM05D003201 ORTHO05D008914 8.8e-80 301.2 267 59.6
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 1.1e-79 300.8 279 59.5
HanXRQChr15g0468831 Helianthus annuus HOM05D003201 ORTHO05D008914 1.7e-78 297.0 276 54.7
PSO782G1293 Papaver somniferum HOM05D003201 ORTHO05D008914 3.5e-76 289.3 274 56.2
PGR042G2091 Punica granatum HOM05D003201 ORTHO05D008914 3.8e-75 285.8 272 55.5
ECA233G2337 Erigeron canadensis HOM05D004148 ORTHO05D004709 6.5e-75 285.0 254 55.1
BcaNung03722 Brassica carinata HOM05D000936 ORTHO05D001411 8.5e-75 284.6 269 53.5
Rhsim07G0174100 Rhododendron simsii HOM05D003201 ORTHO05D008914 1.5e-74 283.9 366 45.1
FAN20G1097 Fragaria x ananassa HOM05D000163 ORTHO05D008914 9.4e-74 281.2 254 59.1
Lsat_1_v5_gn_5_73181 Lactuca sativa HOM05D003201 ORTHO05D008914 2.0e-71 273.5 260 53.8
HPP92_024271 Vanilla planifolia HOM05D003201 ORTHO05D008914 3.4e-71 272.7 263 57.0
AUR62020698 Chenopodium quinoa HOM05D003201 ORTHO05D008914 3.1e-69 266.2 274 53.6
ATR0686G110 Amborella trichopoda HOM05D003201 ORTHO05D008914 1.9e-66 256.9 241 55.2
Sc23g0004340 Simmondsia chinensis HOM05D003201 ORTHO05D008914 6.1e-65 251.9 200 61.5
SEGI_35572 Sequoiadendron giganteum HOM05D003201 ORTHO05D008914 1.1e-61 241.1 281 47.0
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 1.8e-61 240.4 300 50.0
TAR636G2614 Trochodendron aralioides HOM05D003201 ORTHO05D008914 2.5e-58 229.9 156 67.9
vmacro05085 Vaccinium macrocarpon HOM05D003201 ORTHO05D008914 1.6e-57 227.3 490 33.5
Sed0017242 Sechium edule HOM05D003201 ORTHO05D008914 1.4e-53 214.2 185 63.2
FAN27G2114 Fragaria x ananassa HOM05D000163 ORTHO05D000219 1.3e-51 207.6 221 53.8
Potri.006G281101 Populus trichocarpa HOM05D003201 ORTHO05D008914 2.3e-51 206.8 151 68.9
AagrBONN_evm.TU.Sc2ySwM_344.2003 Anthoceros agrestis HOM05D003201 ORTHO05D008914 5.8e-47 192.2 216 44.4
Mapoly0037s0034 Marchantia polymorpha HOM05D003201 ORTHO05D008914 9.8e-47 191.4 210 43.3
unitig_32.g11042 Utricularia gibba HOM05D003201 ORTHO05D008914 1.0e-43 181.4 184 53.3
SMO115G0061 Selaginella moellendorffii HOM05D003201 ORTHO05D008914 3.6e-41 172.9 198 40.9
Zm00001eb079750 Zea mays HOM05D003201 ORTHO05D008914 8.1e-41 171.8 194 49.5
Pp3c10_22770 Physcomitrium patens HOM05D003201 ORTHO05D008914 2.0e-39 167.2 205 41.5
SHI31610 Sapria himalayana HOM05D003201 ORTHO05D008914 9.8e-39 164.9 110 64.5
MD08G1125300 Malus domestica HOM05D003201 ORTHO05D008914 6.4e-30 135.6 205 41.5
Nn7g38306 Nelumbo nucifera HOM05D003201 ORTHO05D008914 9.2e-29 131.7 112 56.2
TPR.G12326 Trifolium pratense HOM05D003201 ORTHO05D008914 1.5e-26 124.4 72 81.9
CDE05G1961 Ceratophyllum demersum HOM05D003201 ORTHO05D008914 4.4e-23 112.8 139 48.2
COL.COLO4_10365 Corchorus olitorius HOM05D003201 ORTHO05D008914 4.9e-22 109.4 176 40.9
Phvul.009G102700 Phaseolus vulgaris HOM05D003201 ORTHO05D008914 6.4e-22 109.0 295 31.9
Os04g0476400 Oryza sativa ssp. japonica HOM05D003201 ORTHO05D008914 3.2e-21 106.7 85 56.5
Hma1.2p1_1357F.1_g277905 Hydrangea macrophylla HOM05D003201 ORTHO05D008914 2.1e-17 94.0 62 66.1
CBR_g23989 Chara braunii HOM05D003201 ORTHO05D008914 3.6e-17 93.2 68 57.4
Cre07.g320800 Chlamydomonas reinhardtii HOM05D003201 ORTHO05D008914 1.8e-08 64.3 329 21.0


User provided reference genes

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