Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 7.0e-259 897.5 760 100.0
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 1.3e-135 488.0 468 66.5
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 5.5e-78 296.6 463 56.6
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 9.1e-73 279.3 468 49.1
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 1.2e-72 278.9 336 57.7
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 1.1e-65 255.8 457 48.8
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 1.4e-65 255.4 216 69.0
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 5.9e-64 250.0 234 63.7
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 2.5e-62 244.6 468 45.7
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 3.2e-62 244.2 327 63.0
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 2.3e-60 238.0 447 44.1
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 7.5e-59 233.0 207 63.8
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 1.1e-57 229.2 222 62.2
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 3.5e-56 224.2 212 59.0
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 5.9e-56 223.4 217 56.2
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 1.7e-55 221.9 208 57.7
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 2.2e-55 221.5 217 59.0
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 2.2e-55 221.5 201 61.2
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 5.0e-55 220.3 234 55.1
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 2.5e-54 218.0 204 58.8
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 3.2e-54 217.6 227 55.9
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 4.2e-54 217.2 218 58.7
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 5.5e-54 216.9 232 51.7
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 1.2e-53 215.7 214 56.5
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 1.6e-53 215.3 195 60.5
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 3.6e-53 214.2 219 59.4
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 4.7e-53 213.8 211 56.4
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 5.2e-52 210.3 313 46.0
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 6.8e-52 209.9 208 57.2
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.5e-51 208.8 208 57.2
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 3.4e-51 207.6 201 58.7
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 3.4e-51 207.6 208 56.7
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 3.4e-51 207.6 208 56.7
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 6.3e-50 203.4 348 47.1
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 9.1e-49 199.5 198 58.6
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 2.7e-48 198.0 150 71.3
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 7.7e-48 196.4 217 54.8
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 2.3e-47 194.9 154 69.5
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 3.8e-47 194.1 207 56.5
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 3.8e-47 194.1 167 65.3
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 6.5e-47 193.4 221 55.2
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 8.6e-47 193.0 234 53.4
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 8.6e-47 193.0 146 68.5
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 1.5e-46 192.2 246 50.4
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 1.5e-46 192.2 246 50.4
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 1.9e-46 191.8 242 50.8
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 3.3e-46 191.0 238 51.3
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 3.3e-46 191.0 205 55.6
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 4.2e-46 190.7 193 58.0
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 5.5e-46 190.3 205 55.1
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 9.5e-46 189.5 210 56.7
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.2e-45 189.1 210 56.2
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.1e-45 188.3 210 55.7
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 6.1e-45 186.8 212 52.4
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 1.4e-44 185.7 217 51.6
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 1.8e-44 185.3 211 53.6
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 1.8e-44 185.3 221 51.6
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 3.0e-44 184.5 184 54.3
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 4.0e-44 184.1 184 54.3
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 5.2e-44 183.7 159 66.0
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 5.2e-44 183.7 157 66.9
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 6.8e-44 183.3 229 49.8
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 5.7e-43 180.3 225 52.0
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 7.5e-43 179.9 213 51.6
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 9.8e-43 179.5 222 50.0
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 9.8e-43 179.5 150 66.7
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 1.3e-42 179.1 202 55.0
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 1.3e-42 179.1 324 42.6
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 1.7e-42 178.7 237 48.1
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 2.2e-42 178.3 215 49.8
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 2.2e-42 178.3 215 49.8
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 3.7e-42 177.6 144 65.3
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 3.7e-42 177.6 342 40.6
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 4.9e-42 177.2 111 78.4
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 3.1e-41 174.5 153 64.1
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 3.1e-41 174.5 144 64.6
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 9.2e-41 172.9 201 53.2
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 9.2e-41 172.9 373 39.1
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 9.2e-41 172.9 108 77.8
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.2e-40 172.6 368 43.5
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 2.0e-40 171.8 246 48.4
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 2.0e-40 171.8 111 77.5
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 3.5e-40 171.0 153 63.4
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 4.5e-40 170.6 109 79.8
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 7.8e-40 169.9 185 53.5
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 2.3e-39 168.3 213 47.9
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 2.9e-39 167.9 147 61.2
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 5.0e-39 167.2 154 61.0
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 1.9e-38 165.2 519 38.7
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 4.3e-38 164.1 528 40.0
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 4.3e-38 164.1 158 59.5
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 7.3e-38 163.3 142 61.3
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 1.6e-37 162.2 365 37.5
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 2.8e-37 161.4 129 67.4
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 3.6e-37 161.0 130 68.5
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 4.7e-37 160.6 415 42.9
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 1.0e-36 159.5 436 36.5
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 1.4e-36 159.1 382 40.1
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 2.3e-36 158.3 120 66.7
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 8.9e-36 156.4 107 72.0
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 1.2e-35 156.0 156 55.8
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 1.5e-35 155.6 110 70.0
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 2.6e-35 154.8 146 56.8
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 1.7e-34 152.1 106 67.9
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 3.7e-34 151.0 112 67.0
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 6.4e-34 150.2 146 54.8
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 1.4e-33 149.1 416 41.3
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 1.4e-33 149.1 157 52.9
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 2.0e-32 145.2 222 45.5
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 2.0e-32 145.2 520 36.0
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 6.0e-32 143.7 95 73.7
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 7.8e-32 143.3 146 51.4
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 1.3e-31 142.5 517 36.9
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 3.0e-31 141.4 133 61.7
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 6.6e-31 140.2 158 51.9
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 1.9e-30 138.7 90 71.1
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 8.0e-29 133.3 148 54.7
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 8.0e-29 133.3 148 54.7
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 1.1e-28 132.9 95 71.6
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 1.1e-28 132.9 227 41.4
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 2.0e-27 128.6 80 73.8
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 4.4e-27 127.5 115 60.0
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 7.5e-27 126.7 167 47.9
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 9.8e-27 126.3 201 48.3
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 4.1e-25 120.9 140 52.9
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 5.4e-25 120.6 110 61.8
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 1.2e-24 119.4 103 60.2
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 2.0e-24 118.6 110 60.9
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 3.3e-22 111.3 190 44.2
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 5.6e-22 110.5 248 37.1
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.2e-21 109.4 118 49.2
Gohir.D06G179300 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.8e-21 108.2 142 51.4
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 2.8e-21 108.2 108 52.8
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 4.7e-21 107.5 105 57.1
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 8.1e-21 106.7 102 52.0
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 4.0e-20 104.4 108 51.9
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 4.0e-20 104.4 104 56.7
Haze_21676 Corylus avellana HOM05D063909 ORTHO05D004564 6.8e-20 103.6 123 56.1
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 8.9e-20 103.2 100 57.0
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 1.2e-19 102.8 105 51.4
Rhsim07G0241300 Rhododendron simsii HOM05D004041 ORTHO05D004564 1.5e-19 102.4 104 54.8
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 2.6e-19 101.7 105 50.5
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 3.4e-19 101.3 114 47.4
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 5.8e-19 100.5 107 53.3
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 1.7e-18 99.0 104 52.9
RhsimUnG0236200 Rhododendron simsii HOM05D004041 ORTHO05D004564 2.9e-18 98.2 100 54.0
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 4.1e-17 94.4 108 53.7
Gorai.010G209300 Gossypium raimondii HOM05D004041 ORTHO05D004564 2.1e-16 92.0 152 45.4
Gorai.010G209900 Gossypium raimondii HOM05D004041 ORTHO05D004564 4.6e-16 90.9 142 47.2
TPR.G14045 Trifolium pratense HOM05D004041 ORTHO05D004564 6.0e-16 90.5 52 76.9
MCO09G628 Micromonas commoda HOM05D004041 ORTHO05D004564 1.0e-15 89.7 156 41.0
Cre09.g409200 Chlamydomonas reinhardtii HOM05D004041 ORTHO05D004564 1.6e-13 82.4 143 42.7
TPR.G10966 Trifolium pratense HOM05D004041 ORTHO05D004564 1.1e-12 79.7 55 72.7
Zm00001eb357810 Zea mays HOM05D004041 ORTHO05D004564 1.4e-12 79.3 103 44.7
Dinv19111 Davidia involucrata HOM05D004041 ORTHO05D004564 2.4e-12 78.6 55 72.7
Zm00001eb204760 Zea mays HOM05D004041 ORTHO05D004564 6.8e-12 77.0 108 45.4
PRCOL_00006922 Prasinoderma coloniale HOM05D004041 ORTHO05D004564 2.6e-11 75.1 108 41.7
BcaC01g02423 Brassica carinata HOM05D004041 ORTHO05D004564 1.3e-10 72.8 79 57.0
Cfa024514 Carpinus fangiana HOM05D004041 ORTHO05D004564 2.9e-10 71.6 142 35.2
SGA_v2.0_scaffold7G03771 Striga asiatica HOM05D004041 ORTHO05D004564 1.1e-09 69.7 67 55.2
CARHR261000 Cardamine hirsuta HOM05D004041 ORTHO05D004564 2.4e-09 68.6 63 58.7
Gorai.010G211700 Gossypium raimondii HOM05D004041 ORTHO05D004564 9.2e-09 66.6 74 51.4
arahy.Tifrunner.gnm1.ann1.EPLR59 Arachis hypogaea HOM05D004041 ORTHO05D004564 1.6e-08 65.9 83 60.2
TAR626G1323 Trochodendron aralioides HOM05D004041 ORTHO05D004564 5.1e-07 60.8 121 39.7


User provided reference genes

Program Settings