Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0063341 Lupinus albus HOM05D007692 ORTHO05D009696 5.7e-48 194.1 112 100.0
TPR.G38893 Trifolium pratense HOM05D007692 ORTHO05D009696 2.2e-31 139.0 112 62.5
Psat6g022960 Pisum sativum HOM05D007692 ORTHO05D009696 9.1e-30 133.7 113 61.9
Medtr1g015470 Medicago truncatula HOM05D007692 ORTHO05D009696 1.3e-28 129.8 112 58.9
Glyma.17G225900 Glycine max HOM05D007692 ORTHO05D009696 1.1e-27 126.7 112 61.6
arahy.Tifrunner.gnm1.ann1.0E4SK3 Arachis hypogaea HOM05D007692 ORTHO05D009696 2.5e-27 125.6 114 60.5
VMungo0647G2522 Vigna mungo HOM05D007692 ORTHO05D009696 2.1e-26 122.5 112 58.0
Glyma.06G056100 Glycine max HOM05D007692 ORTHO05D009696 2.3e-25 119.0 112 57.1
Lj5g0021751 Lotus japonicus HOM05D007692 ORTHO05D009696 8.8e-25 117.1 112 54.5
TPR.G3568 Trifolium pratense HOM05D007692 ORTHO05D009696 1.1e-24 116.7 114 57.0
Medtr3g105090 Medicago truncatula HOM05D007692 ORTHO05D009696 8.2e-23 110.5 113 55.8
VMungo1309G1304 Vigna mungo HOM05D007692 ORTHO05D009696 3.1e-22 108.6 112 54.5
Cpa.g.sc126.21 Carica papaya HOM05D007692 ORTHO05D009696 9.1e-22 107.1 112 50.0
Lj1g0020593 Lotus japonicus HOM05D007692 ORTHO05D009696 9.1e-22 107.1 113 61.9
Phvul.009G082200 Phaseolus vulgaris HOM05D007692 ORTHO05D009696 9.1e-22 107.1 112 52.7
Medtr1g015490 Medicago truncatula HOM05D007692 ORTHO05D009696 2.6e-21 105.5 105 55.2
Manes.16G085800 Manihot esculenta HOM05D007692 ORTHO05D009696 4.5e-21 104.8 103 53.4
MD08G1071600 Malus domestica HOM05D007692 ORTHO05D009696 1.0e-20 103.6 112 53.6
MD15G1049600 Malus domestica HOM05D007692 ORTHO05D009696 1.0e-20 103.6 112 53.6
Ciclev10010178m.g Citrus clementina HOM05D007692 ORTHO05D009696 2.2e-20 102.4 111 59.5
QL02p017055 Quercus lobata HOM05D007692 ORTHO05D009696 2.9e-20 102.1 111 48.6
RcHm_v2.0_Chr6g0311901 Rosa chinensis HOM05D007692 ORTHO05D009696 3.8e-20 101.7 112 50.0
Phvul.001G038600 Phaseolus vulgaris HOM05D007692 ORTHO05D009696 5.0e-20 101.3 92 55.4
Nn2g12400 Nelumbo nucifera HOM05D007692 ORTHO05D009696 1.1e-19 100.1 99 52.5
FvH4_2g30960 Fragaria vesca HOM05D007692 ORTHO05D009696 1.5e-19 99.8 111 51.4
Hma1.2p1_0278F.1_g111850 Hydrangea macrophylla HOM05D007692 ORTHO05D009696 1.9e-19 99.4 102 51.0
Sabra06G0170400 Salix brachista HOM05D007692 ORTHO05D009696 2.5e-19 99.0 110 49.1
Thecc.09G063700 Theobroma cacao HOM05D007692 ORTHO05D009696 2.5e-19 99.0 103 51.5
Duzib168G1711 Durio zibethinus HOM05D007692 ORTHO05D009696 4.2e-19 98.2 103 50.5
Prupe.1G403900 Prunus persica HOM05D007692 ORTHO05D009696 5.5e-19 97.8 107 53.3
QL02p017043 Quercus lobata HOM05D007692 ORTHO05D009696 9.4e-19 97.1 108 48.1
Psat5g030520 Pisum sativum HOM05D007692 ORTHO05D009696 1.6e-18 96.3 93 54.8
TAR624G0897 Trochodendron aralioides HOM05D007692 ORTHO05D009696 1.6e-18 96.3 103 48.5
Potri.006G220500 Populus trichocarpa HOM05D007692 ORTHO05D009696 2.1e-18 95.9 103 48.5
COL.COLO4_21142 Corchorus olitorius HOM05D007692 ORTHO05D009696 2.7e-18 95.5 104 48.1
CiPaw.15G091700 Carya illinoinensis HOM05D007692 ORTHO05D009696 8.0e-18 94.0 110 46.4
Gohir.D05G040100 Gossypium hirsutum HOM05D007692 ORTHO05D009696 5.2e-17 91.3 105 48.6
Gorai.009G040500 Gossypium raimondii HOM05D007692 ORTHO05D009696 5.2e-17 91.3 105 48.6
ClCG05G015760 Citrullus lanatus HOM05D007692 ORTHO05D009696 6.7e-17 90.9 108 46.3
MELO3C016914.2 Cucumis melo HOM05D007692 ORTHO05D009696 8.8e-17 90.5 105 46.7
CsaV3_4G036060 Cucumis sativus L. HOM05D007692 ORTHO05D009696 8.8e-17 90.5 105 46.7
Ah.11g044290 Amaranthus hybridus HOM05D007692 ORTHO05D009696 1.2e-16 90.1 109 48.6
Solyc08g061640.1 Solanum lycopersicum HOM05D007692 ORTHO05D009696 1.5e-16 89.7 110 43.6
Sopen08g017100 Solanum pennellii HOM05D007692 ORTHO05D009696 1.5e-16 89.7 110 43.6
PGSC0003DMG400045083 Solanum tuberosum HOM05D007692 ORTHO05D009696 1.5e-16 89.7 110 43.6
Sed0007061 Sechium edule HOM05D007692 ORTHO05D009696 2.6e-16 89.0 103 45.6
EL10Ac2g03778 Beta vulgaris HOM05D007692 ORTHO05D009696 3.3e-16 88.6 104 46.2
Haze_18297 Corylus avellana HOM05D007692 ORTHO05D009696 3.3e-16 88.6 102 49.0
Cfa017868 Carpinus fangiana HOM05D007692 ORTHO05D009696 4.4e-16 88.2 102 49.0
Eucgr.C00729 Eucalyptus grandis HOM05D007692 ORTHO05D009696 4.4e-16 88.2 101 46.5
Nitab4.5_0008422g0010 Nicotiana tabacum HOM05D007692 ORTHO05D009696 4.4e-16 88.2 110 41.8
CAN.G567.82 Capsicum annuum HOM05D007692 ORTHO05D009696 5.7e-16 87.8 110 43.6
PGR031G0311 Punica granatum HOM05D007692 ORTHO05D009696 7.5e-16 87.4 100 50.0
TWI63G1278 Tripterygium wilfordii HOM05D007692 ORTHO05D009696 7.5e-16 87.4 107 45.8
CANSAT25G1329 Cannabis sativa HOM05D007692 ORTHO05D009696 9.7e-16 87.0 110 51.8
Gohir.A05G038600 Gossypium hirsutum HOM05D007692 ORTHO05D009696 9.7e-16 87.0 105 47.6
Nn8g39911 Nelumbo nucifera HOM05D007692 ORTHO05D009696 1.3e-15 86.7 109 45.9
Nitab4.5_0000446g0120 Nicotiana tabacum HOM05D007692 ORTHO05D009696 2.8e-15 85.5 110 40.0
HPP92_004156 Vanilla planifolia HOM05D007692 ORTHO05D009696 4.8e-15 84.7 99 44.4
Dinv22937 Davidia involucrata HOM05D007692 ORTHO05D009696 6.3e-15 84.3 104 45.2
Peaxi162Scf00486g00102 Petunia axillaris HOM05D007692 ORTHO05D009696 8.2e-15 84.0 109 42.2
Thhalv10015977m.g Eutrema salsugineum HOM05D007692 ORTHO05D009696 2.4e-14 82.4 101 50.5
A10p18810 Brassica napus HOM05D007692 ORTHO05D009696 4.1e-14 81.6 101 46.5
C09p54830 Brassica napus HOM05D007692 ORTHO05D009696 4.1e-14 81.6 101 46.5
BolC9t58343H Brassica oleracea HOM05D007692 ORTHO05D009696 4.1e-14 81.6 101 46.5
BraA10t43961Z Brassica rapa HOM05D007692 ORTHO05D009696 4.1e-14 81.6 101 46.5
CSS0041722 Camellia sinensis var. sinensis HOM05D007692 ORTHO05D009696 7.0e-14 80.9 88 50.0
DCAR_001232 Daucus carota HOM05D006390 ORTHO05D007899 1.6e-13 79.7 98 43.9
Lsat_1_v5_gn_7_58320 Lactuca sativa HOM05D006390 ORTHO05D007899 1.6e-13 79.7 107 44.9
BcaB08g36470 Brassica carinata HOM05D007692 ORTHO05D009696 3.5e-13 78.6 101 44.6
HanXRQChr03g0065641 Helianthus annuus HOM05D007692 ORTHO05D009696 3.5e-13 78.6 112 50.0
Sc06g0001120 Simmondsia chinensis HOM05D007692 ORTHO05D009696 3.5e-13 78.6 110 39.1
MBI13_g42817_MAGBIO Magnolia biondii HOM05D007692 ORTHO05D009696 7.7e-13 77.4 103 43.7
PSO541G2080 Papaver somniferum HOM05D007692 ORTHO05D009696 7.7e-13 77.4 100 45.0
SGA_v2.0_scaffold20G09157 Striga asiatica HOM05D006390 ORTHO05D007899 1.0e-12 77.0 106 40.6
CARHR191630 Cardamine hirsuta HOM05D007692 ORTHO05D009696 1.3e-12 76.6 98 42.9
unitig_32.g11527 Utricularia gibba HOM05D007692 ORTHO05D009696 2.9e-12 75.5 103 40.8
ECA240G2866 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.8e-12 75.1 105 42.9
THA.LOC104810956 Tarenaya hassleriana HOM05D007692 ORTHO05D009696 5.0e-12 74.7 99 40.4
CDE04G2134 Ceratophyllum demersum HOM05D007692 ORTHO05D009696 8.5e-12 73.9 106 41.5
PSO675G1902 Papaver somniferum HOM05D007692 ORTHO05D009696 1.1e-11 73.6 100 44.0
Lalb_Chr14g0366461 Lupinus albus HOM05D007692 ORTHO05D009696 1.5e-11 73.2 76 52.6
Oeu003971.1 Olea europaea HOM05D007692 ORTHO05D009696 2.5e-11 72.4 105 39.0
Sp6g23280 Schrenkiella parvula HOM05D007692 ORTHO05D009696 2.5e-11 72.4 101 50.5
Aqoxy2G03896 Aquilegia oxysepala HOM05D007692 ORTHO05D009696 5.5e-11 71.2 108 38.0
AT5G21910 Arabidopsis thaliana HOM05D007692 ORTHO05D009696 2.1e-10 69.3 100 50.0
Os03g0176900 Oryza sativa ssp. japonica HOM05D007692 ORTHO05D009696 2.1e-10 69.3 103 43.7
Carub.0006s1955 Capsella rubella HOM05D007692 ORTHO05D009696 6.1e-10 67.8 100 48.0
Cc08_g01120 Coffea canephora HOM05D007692 ORTHO05D009696 6.1e-10 67.8 104 48.1
Zm00001eb005780 Zea mays HOM05D007692 ORTHO05D009696 8.0e-10 67.4 102 39.2
ATR0598G206 Amborella trichopoda HOM05D007692 ORTHO05D009696 3.0e-09 65.5 103 34.0
SalBow4G0926 Salvia bowleyana HOM05D007692 ORTHO05D009696 3.0e-09 65.5 100 33.0
Psat6g004480 Pisum sativum HOM05D007692 ORTHO05D009696 4.4e-08 61.6 81 44.4
Carub.0005s0963 Capsella rubella HOM05D007692 ORTHO05D009696 9.8e-08 60.5 101 46.5
Duzib150G0238 Durio zibethinus HOM05D007692 ORTHO05D009696 2.2e-07 59.3 127 37.8
Atru.chr7.1844 Acer truncatum HOM05D007692 ORTHO05D009696 2.4e-06 55.8 51 51.0


User provided reference genes

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