Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0063191 Lupinus albus HOM05D004638 ORTHO05D005443 8.1e-167 590.5 335 100.0
Lalb_Chr08g0244981 Lupinus albus HOM05D004638 ORTHO05D005443 7.2e-123 444.5 340 80.3
VMungo1215G0894 Vigna mungo HOM05D004638 ORTHO05D005443 9.4e-107 391.0 353 68.3
Phvul.003G100800 Phaseolus vulgaris HOM05D004638 ORTHO05D005443 3.6e-106 389.0 353 67.7
Psat2g177000 Pisum sativum HOM05D004638 ORTHO05D005443 9.8e-104 380.9 361 66.2
Glyma.19G074500 Glycine max HOM05D004638 ORTHO05D005443 4.1e-102 375.6 358 63.1
TPR.G18128 Trifolium pratense HOM05D004638 ORTHO05D005443 2.7e-101 372.9 387 59.2
Medtr5g012820 Medicago truncatula HOM05D004638 ORTHO05D005443 1.7e-100 370.2 351 66.1
Glyma.05G075900 Glycine max HOM05D004638 ORTHO05D005443 1.4e-97 360.5 350 64.9
Ca_03509_v3 Cicer arietinum L. HOM05D004638 ORTHO05D005443 2.5e-91 339.7 348 63.2
Duzib052G1194 Durio zibethinus HOM05D004638 ORTHO05D005443 4.3e-91 339.0 349 57.0
Cfa014805 Carpinus fangiana HOM05D004638 ORTHO05D005443 9.5e-91 337.8 350 57.7
Duzib212G0972 Durio zibethinus HOM05D004638 ORTHO05D005443 3.0e-89 332.8 353 55.0
Haze_15400 Corylus avellana HOM05D004638 ORTHO05D005443 5.2e-89 332.0 348 60.1
Haze_15402 Corylus avellana HOM05D004638 ORTHO05D005443 5.2e-89 332.0 348 60.1
CiPaw.01G176300 Carya illinoinensis HOM05D004638 ORTHO05D005443 5.7e-88 328.6 352 56.0
ClCG06G018050 Citrullus lanatus HOM05D004638 ORTHO05D005443 5.7e-88 328.6 350 56.3
TPR.G7963 Trifolium pratense HOM05D004638 ORTHO05D005443 8.3e-87 324.7 342 59.4
arahy.Tifrunner.gnm1.ann1.L9DXTM Arachis hypogaea HOM05D004638 ORTHO05D005443 1.1e-86 324.3 347 60.2
Lj4g0009002 Lotus japonicus HOM05D004638 ORTHO05D005443 1.1e-86 324.3 337 59.9
QL06p021792 Quercus lobata HOM05D004638 ORTHO05D005443 1.1e-86 324.3 347 56.2
MELO3C026193.2 Cucumis melo HOM05D004638 ORTHO05D005443 5.4e-86 322.0 349 54.7
MELO3C023050.2 Cucumis melo HOM05D004638 ORTHO05D005443 7.0e-86 321.6 353 56.9
CsaV3_1G000420 Cucumis sativus L. HOM05D004638 ORTHO05D005443 7.0e-86 321.6 351 55.0
CsaV3_2G012340 Cucumis sativus L. HOM05D004638 ORTHO05D005443 1.2e-85 320.9 352 56.2
ClCG06G007330 Citrullus lanatus HOM05D004638 ORTHO05D005443 1.0e-84 317.8 348 57.8
Atru.chr4.1922 Acer truncatum HOM05D004638 ORTHO05D005443 5.0e-84 315.5 346 56.9
TWI53G1292 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 2.5e-83 313.2 349 54.2
Sed0011634 Sechium edule HOM05D004638 ORTHO05D005443 3.3e-83 312.8 348 57.2
Thecc.04G268000 Theobroma cacao HOM05D004638 ORTHO05D005443 5.6e-83 312.0 350 54.3
PGR142G1578 Punica granatum HOM05D004638 ORTHO05D005443 4.0e-81 305.8 350 53.7
MD16G1229100 Malus domestica HOM05D004638 ORTHO05D005443 8.9e-81 304.7 356 54.5
Haze_11486 Corylus avellana HOM05D004638 ORTHO05D005443 2.0e-80 303.5 350 53.4
Gohir.D09G231600 Gossypium hirsutum HOM05D004638 ORTHO05D005443 2.0e-80 303.5 354 53.4
Gorai.006G254300 Gossypium raimondii HOM05D004638 ORTHO05D005443 2.0e-80 303.5 354 53.4
Prupe.1G051000 Prunus persica HOM05D004638 ORTHO05D005443 2.0e-80 303.5 349 55.6
Manes.15G046900 Manihot esculenta HOM05D004638 ORTHO05D005443 1.7e-79 300.4 348 56.3
COL.COLO4_15993 Corchorus olitorius HOM05D004638 ORTHO05D005443 2.2e-79 300.1 351 50.7
Gohir.A09G230500 Gossypium hirsutum HOM05D004638 ORTHO05D005443 2.9e-79 299.7 354 52.3
THA.LOC104800549 Tarenaya hassleriana HOM05D004638 ORTHO05D005443 8.3e-79 298.1 357 52.7
CiPaw.02G105500 Carya illinoinensis HOM05D004638 ORTHO05D005443 2.4e-78 296.6 339 55.8
GSVIVG01027946001 Vitis vinifera HOM05D004638 ORTHO05D005443 5.4e-78 295.4 343 54.5
FAN17G1367 Fragaria x ananassa HOM05D004638 ORTHO05D005443 7.0e-78 295.0 354 50.3
Potri.010G064100 Populus trichocarpa HOM05D004638 ORTHO05D005443 9.2e-78 294.7 349 55.3
TAR623G0129 Trochodendron aralioides HOM05D004638 ORTHO05D005443 2.0e-77 293.5 320 56.6
RcHm_v2.0_Chr4g0395981 Rosa chinensis HOM05D004638 ORTHO05D005443 6.0e-77 292.0 355 53.8
CANSAT01G0932 Cannabis sativa HOM05D004638 ORTHO05D005443 3.9e-76 289.3 348 54.0
CANSAT01G3035 Cannabis sativa HOM05D004638 ORTHO05D005443 3.9e-76 289.3 348 54.0
FvH4_4g05060 Fragaria vesca HOM05D004638 ORTHO05D005443 3.9e-76 289.3 355 52.7
FAN12G0885 Fragaria x ananassa HOM05D004638 ORTHO05D005443 3.9e-76 289.3 355 52.7
Ciclev10025979m.g Citrus clementina HOM05D004638 ORTHO05D005443 1.9e-75 287.0 351 49.6
FvH4_2g18960 Fragaria vesca HOM05D004638 ORTHO05D005443 5.6e-75 285.4 355 49.9
FAN15G0747 Fragaria x ananassa HOM05D004638 ORTHO05D005443 7.3e-75 285.0 336 53.9
FAN24G1523 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.6e-74 283.9 355 49.9
TWI73G0168 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 6.2e-74 282.0 352 50.9
Cpa.g.c29962.1 Carica papaya HOM05D004638 ORTHO05D005443 1.8e-73 280.4 351 51.0
Dinv31214 Davidia involucrata HOM05D001005 ORTHO05D000836 2.3e-73 280.0 339 55.2
Aa31LG11G6060 Aethionema arabicum HOM05D004638 ORTHO05D005443 4.0e-73 279.3 353 51.0
Sp6g37620 Schrenkiella parvula HOM05D004638 ORTHO05D005443 1.5e-72 277.3 355 51.3
Eucgr.H01383 Eucalyptus grandis HOM05D004638 ORTHO05D005443 3.4e-72 276.2 348 50.3
BcaB01g05944 Brassica carinata HOM05D004638 ORTHO05D005443 5.8e-72 275.4 352 49.7
BolC3t12811H Brassica oleracea HOM05D004638 ORTHO05D005443 9.9e-72 274.6 354 50.3
BcaC03g13151 Brassica carinata HOM05D004638 ORTHO05D005443 2.9e-71 273.1 357 49.3
BolC2t06190H Brassica oleracea HOM05D004638 ORTHO05D005443 2.9e-71 273.1 357 49.3
C03p02590 Brassica napus HOM05D004638 ORTHO05D005443 3.7e-71 272.7 356 50.0
Carub.0006s0414 Capsella rubella HOM05D004638 ORTHO05D005443 8.3e-71 271.6 357 49.3
BcaB05g21727 Brassica carinata HOM05D004638 ORTHO05D005443 1.4e-70 270.8 351 49.3
Atru.chr2.74 Acer truncatum HOM05D004638 ORTHO05D005443 3.2e-70 269.6 322 54.3
Potri.008G173300 Populus trichocarpa HOM05D004638 ORTHO05D005443 4.1e-70 269.2 348 51.4
Thhalv10013953m.g Eutrema salsugineum HOM05D004638 ORTHO05D005443 5.4e-70 268.9 355 49.6
FAN22G0870 Fragaria x ananassa HOM05D004638 ORTHO05D005443 9.2e-70 268.1 355 48.2
CARHR208030 Cardamine hirsuta HOM05D004638 ORTHO05D005443 1.2e-69 267.7 337 51.0
AL6G15050 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 1.6e-69 267.3 373 47.7
BcaB01g05717 Brassica carinata HOM05D004638 ORTHO05D005443 1.6e-69 267.3 364 49.2
A03p02250 Brassica napus HOM05D004638 ORTHO05D005443 1.6e-69 267.3 355 49.0
BraA03t09589Z Brassica rapa HOM05D004638 ORTHO05D005443 1.6e-69 267.3 355 49.0
BraA02t04837Z Brassica rapa HOM05D004638 ORTHO05D005443 2.1e-69 266.9 352 48.6
C02p02210 Brassica napus HOM05D004638 ORTHO05D005443 7.8e-69 265.0 353 48.2
DCAR_007662 Daucus carota HOM05D004638 ORTHO05D005443 6.6e-68 261.9 340 47.4
Hma1.2p1_0751F.1_g212710 Hydrangea macrophylla HOM05D004638 ORTHO05D005443 2.5e-67 260.0 364 47.0
AT5G05210 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 5.6e-67 258.8 392 45.4
Sabra10G0042900 Salix brachista HOM05D004638 ORTHO05D005443 5.6e-67 258.8 347 49.3
Lj2C17T3 Lonicera japonica HOM05D004638 ORTHO05D005443 2.8e-66 256.5 341 49.6
CDE06G2325 Ceratophyllum demersum HOM05D004638 ORTHO05D005443 4.4e-64 249.2 321 48.3
ATR0051G063 Amborella trichopoda HOM05D004638 ORTHO05D005443 2.9e-63 246.5 332 48.2
Aqoxy5G00949 Aquilegia oxysepala HOM05D004638 ORTHO05D005443 1.9e-62 243.8 375 46.7
Ah.16g102130 Amaranthus hybridus HOM05D004638 ORTHO05D005443 3.2e-62 243.0 364 45.1
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 3.0e-60 236.5 353 46.2
Lsat_1_v5_gn_9_30280 Lactuca sativa HOM05D004638 ORTHO05D005443 2.8e-58 229.9 343 46.9
MD13G1224300 Malus domestica HOM05D004638 ORTHO05D005443 3.6e-58 229.6 275 54.5
HanXRQChr11g0320631 Helianthus annuus HOM05D004638 ORTHO05D005443 2.6e-56 223.4 348 47.1
Sc06g0001700 Simmondsia chinensis HOM05D004638 ORTHO05D005443 3.4e-56 223.0 351 43.6
HPP92_027401 Vanilla planifolia HOM05D004638 ORTHO05D005443 3.4e-56 223.0 367 42.5
EL10Ac2g04652 Beta vulgaris HOM05D004638 ORTHO05D005443 4.4e-56 222.6 333 44.7
SalBow5G3921 Salvia bowleyana HOM05D004638 ORTHO05D005443 4.4e-56 222.6 338 45.0
CDE07G1349 Ceratophyllum demersum HOM05D002308 ORTHO05D005297 1.7e-55 220.7 288 48.3
COL.COLO4_32263 Corchorus olitorius HOM05D004638 ORTHO05D005443 2.2e-55 220.3 351 42.5
PGSC0003DMG400013656 Solanum tuberosum HOM05D004638 ORTHO05D005443 4.2e-54 216.1 339 42.2
SGA_v2.0_scaffold21G09643 Striga asiatica HOM05D004638 ORTHO05D005443 5.4e-54 215.7 337 41.8
ECA246G4403 Erigeron canadensis HOM05D004638 ORTHO05D005443 7.1e-54 215.3 338 44.7
HanXRQChr14g0438771 Helianthus annuus HOM05D004638 ORTHO05D005443 9.3e-54 214.9 351 45.9
Sopen02g026790 Solanum pennellii HOM05D004638 ORTHO05D005443 7.8e-53 211.8 370 43.5
Solyc02g082130.2 Solanum lycopersicum HOM05D004638 ORTHO05D005443 1.7e-52 210.7 372 43.5
Migut.L01893 Erythranthe guttata HOM05D004638 ORTHO05D005443 2.5e-51 206.8 331 48.0
Peaxi162Scf00048g00171 Petunia axillaris HOM05D004638 ORTHO05D005443 9.6e-51 204.9 342 43.3
MSTRG.26536 Avicennia marina HOM05D004638 ORTHO05D005443 1.6e-50 204.1 347 43.5
Nitab4.5_0001815g0110 Nicotiana tabacum HOM05D004638 ORTHO05D005443 2.8e-50 203.4 345 42.3
MSTRG.13923 Avicennia marina HOM05D004638 ORTHO05D005443 4.8e-50 202.6 340 43.8
Medtr2g079000 Medicago truncatula HOM05D004638 ORTHO05D005443 1.4e-49 201.1 295 47.5
Oeu017919.1 Olea europaea HOM05D004638 ORTHO05D005443 1.8e-49 200.7 374 39.6
SGA_v2.0_scaffold41G15829 Striga asiatica HOM05D004638 ORTHO05D005443 9.9e-48 194.9 337 40.1
Carub.0004s0850 Capsella rubella HOM05D004638 ORTHO05D005443 1.4e-46 191.0 323 42.7
Nitab4.5_0000614g0010 Nicotiana tabacum HOM05D004638 ORTHO05D005443 2.4e-46 190.3 341 40.5
arahy.Tifrunner.gnm1.ann1.XHZZ6B Arachis hypogaea HOM05D004638 ORTHO05D005443 2.1e-45 187.2 299 47.5
CAN.G809.17 Capsicum annuum HOM05D004638 ORTHO05D005443 1.0e-44 184.9 362 40.6
Zm00001eb248040 Zea mays HOM05D004638 ORTHO05D005443 1.3e-44 184.5 357 38.4
CSS0022021 Camellia sinensis var. sinensis HOM05D004638 ORTHO05D005443 2.1e-42 177.2 265 47.9
Mapoly0122s0042 Marchantia polymorpha HOM05D004638 ORTHO05D005443 6.2e-42 175.6 349 37.8
Lj3g0004611 Lotus japonicus HOM05D004638 ORTHO05D005443 4.0e-41 172.9 316 42.1
Nn4g24624 Nelumbo nucifera HOM05D004638 ORTHO05D005443 5.3e-41 172.6 210 50.5
SEGI_31736 Sequoiadendron giganteum HOM05D004638 ORTHO05D005443 1.1e-38 164.9 360 35.6
AL4G22550 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 7.1e-38 162.2 311 38.6
Cc04_g09510 Coffea canephora HOM05D004638 ORTHO05D005443 1.2e-37 161.4 352 39.2
AagrBONN_evm.TU.Sc2ySwM_368.887 Anthoceros agrestis HOM05D004638 ORTHO05D005443 2.5e-35 153.7 315 39.0
Pp3c8_4010 Physcomitrium patens HOM05D004638 ORTHO05D005443 1.3e-34 151.4 337 35.6
Os05g0372200 Oryza sativa ssp. japonica HOM05D004638 ORTHO05D005443 2.8e-34 150.2 354 33.9
AUR62014564 Chenopodium quinoa HOM05D004638 ORTHO05D005443 1.2e-29 134.8 318 34.6
Actinidia22435 Actinidia chinensis HOM05D004638 ORTHO05D005443 2.7e-29 133.7 129 56.6
arahy.Tifrunner.gnm1.ann1.EFW0VL Arachis hypogaea HOM05D004638 ORTHO05D005443 2.7e-29 133.7 173 48.6
SMO119G0466 Selaginella moellendorffii HOM05D004638 ORTHO05D005443 5.1e-28 129.4 345 31.6
AT2G27750 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 4.8e-26 122.9 179 45.8
Actinidia06751 Actinidia chinensis HOM05D004638 ORTHO05D005443 8.2e-26 122.1 303 35.0
HanXRQChr11g0320651 Helianthus annuus HOM05D004638 ORTHO05D005443 8.2e-26 122.1 178 43.3
Atru.chr4.1888 Acer truncatum HOM05D004638 ORTHO05D005443 1.4e-25 121.3 304 32.6
Lj3g0021975 Lotus japonicus HOM05D004638 ORTHO05D005443 4.1e-25 119.8 159 49.7
unitig_22.g5966 Utricularia gibba HOM05D004638 ORTHO05D005443 1.5e-19 101.3 159 40.9
unitig_22.g5967 Utricularia gibba HOM05D004638 ORTHO05D005443 1.9e-19 100.9 88 60.2
AUR62039396 Chenopodium quinoa HOM05D004638 ORTHO05D005443 2.5e-19 100.5 103 52.4
Oeu016931.1 Olea europaea HOM05D004638 ORTHO05D005443 7.4e-19 99.0 230 36.5
Manes.12G121700 Manihot esculenta HOM05D004638 ORTHO05D005443 3.7e-18 96.7 197 44.7
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 6.9e-17 92.4 424 26.9
MCO04G484 Micromonas commoda HOM05D004638 ORTHO05D005443 8.5e-15 85.5 325 29.2
AUR62039395 Chenopodium quinoa HOM05D004638 ORTHO05D005443 1.0e-12 78.6 60 65.0
Medtr2g079040 Medicago truncatula HOM05D004638 ORTHO05D005443 3.9e-12 76.6 52 76.9
Sabra08G0132300 Salix brachista HOM05D004638 ORTHO05D005443 2.0e-11 74.3 152 35.5
Actinidia16422 Actinidia chinensis HOM05D004638 ORTHO05D005443 5.3e-09 66.2 150 36.0
Nitab4.5_0000047g0220 Nicotiana tabacum HOM05D004638 ORTHO05D005443 2.6e-08 63.9 89 41.6
RcHm_v2.0_Chr3g0493171 Rosa chinensis HOM05D004638 ORTHO05D005443 5.0e-07 59.7 65 47.7
RcHm_v2.0_Chr5g0061161 Rosa chinensis HOM05D004638 ORTHO05D005443 1.4e-06 58.2 43 55.8
Lsat_1_v5_gn_9_30260 Lactuca sativa HOM05D004638 ORTHO05D005443 2.5e-06 57.4 64 50.0


User provided reference genes

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