Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0063001 Lupinus albus HOM05D005471 ORTHO05D006170 2.9e-224 781.6 391 100.0
Glyma.06G048400 Glycine max HOM05D005471 ORTHO05D006170 1.3e-195 686.4 395 86.8
Lalb_Chr08g0245201 Lupinus albus HOM05D005471 ORTHO05D006170 1.3e-195 686.4 395 87.8
TPR.G30210 Trifolium pratense HOM05D005471 ORTHO05D006170 5.3e-194 681.0 395 87.3
Medtr3g103350 Medicago truncatula HOM05D005471 ORTHO05D006170 1.0e-192 676.8 395 86.1
Phvul.009G073700 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 2.5e-191 672.2 395 86.1
Lj1g0028245 Lotus japonicus HOM05D005471 ORTHO05D006170 8.2e-187 657.1 395 84.1
arahy.Tifrunner.gnm1.ann1.F72CPE Arachis hypogaea HOM05D005471 ORTHO05D006170 2.5e-183 645.6 396 82.8
arahy.Tifrunner.gnm1.ann1.P8GEK4 Arachis hypogaea HOM05D005471 ORTHO05D006170 1.2e-182 643.3 422 78.2
Psat5g045040 Pisum sativum HOM05D005471 ORTHO05D006170 5.2e-181 637.9 395 82.8
Manes.18G048900 Manihot esculenta HOM05D005471 ORTHO05D006170 4.1e-170 601.7 394 75.4
Thecc.08G085200 Theobroma cacao HOM05D005471 ORTHO05D006170 5.9e-169 597.8 395 75.7
MELO3C010789.2 Cucumis melo HOM05D005471 ORTHO05D006170 2.3e-168 595.9 394 74.6
Cfa013748 Carpinus fangiana HOM05D005471 ORTHO05D006170 2.9e-168 595.5 411 74.2
GSVIVG01009307001 Vitis vinifera HOM05D005471 ORTHO05D006170 2.9e-168 595.5 397 74.3
Ciclev10001411m.g Citrus clementina HOM05D005471 ORTHO05D006170 3.8e-168 595.1 395 74.2
Ca_15890_v3 Cicer arietinum L. HOM05D005471 ORTHO05D006170 8.6e-168 594.0 397 78.1
VMungo1309G2773 Vigna mungo HOM05D005471 ORTHO05D006170 8.6e-168 594.0 397 78.1
Dinv44934 Davidia involucrata HOM05D005471 ORTHO05D006170 1.1e-167 593.6 394 74.4
MD08G1078900 Malus domestica HOM05D005471 ORTHO05D006170 1.5e-167 593.2 397 75.3
Gohir.D06G022300 Gossypium hirsutum HOM05D005471 ORTHO05D006170 7.2e-167 590.9 395 74.9
Gorai.010G026900 Gossypium raimondii HOM05D005471 ORTHO05D006170 7.2e-167 590.9 395 74.9
CsaV3_2G025960 Cucumis sativus L. HOM05D005471 ORTHO05D006170 1.2e-166 590.1 394 74.1
Hma1.2p1_1170F.1_g263420 Hydrangea macrophylla HOM05D005471 ORTHO05D006170 1.6e-166 589.7 397 74.8
MD15G1065900 Malus domestica HOM05D005471 ORTHO05D006170 2.8e-166 589.0 397 74.8
Prupe.1G419800 Prunus persica HOM05D005471 ORTHO05D006170 2.8e-166 589.0 387 76.7
Atru.chr13.864 Acer truncatum HOM05D005471 ORTHO05D006170 2.3e-165 585.9 391 73.9
Gohir.A06G025200 Gossypium hirsutum HOM05D005471 ORTHO05D006170 5.2e-165 584.7 395 74.2
FvH4_2g32730 Fragaria vesca HOM05D005471 ORTHO05D006170 9.8e-164 580.5 395 74.4
FAN20G2694 Fragaria x ananassa HOM05D005471 ORTHO05D006170 1.4e-162 576.6 398 74.1
Glyma.04G047500 Glycine max HOM05D005471 ORTHO05D006170 3.2e-162 575.5 401 75.3
CiPaw.07G172600 Carya illinoinensis HOM05D005471 ORTHO05D006170 1.6e-161 573.2 412 71.8
Nn5g30656 Nelumbo nucifera HOM05D005471 ORTHO05D006170 5.9e-161 571.2 396 72.5
FAN15G0642 Fragaria x ananassa HOM05D005471 ORTHO05D006170 1.0e-160 570.5 398 73.4
Sed0019663 Sechium edule HOM05D005471 ORTHO05D006170 2.9e-160 568.9 386 73.3
ClCG08G016670 Citrullus lanatus HOM05D005471 ORTHO05D006170 3.9e-160 568.5 390 73.1
FAN27G0342 Fragaria x ananassa HOM05D005471 ORTHO05D006170 1.1e-159 567.0 412 71.6
Sabra14G0008300 Salix brachista HOM05D005471 ORTHO05D006170 1.1e-159 567.0 422 69.2
COL.COLO4_28470 Corchorus olitorius HOM05D005471 ORTHO05D006170 2.5e-159 565.8 389 74.3
Eucgr.F02230 Eucalyptus grandis HOM05D005471 ORTHO05D006170 2.5e-159 565.8 396 70.2
RcHm_v2.0_Chr6g0309951 Rosa chinensis HOM05D005471 ORTHO05D006170 3.3e-159 565.5 396 73.0
Manes.05G183100 Manihot esculenta HOM05D005471 ORTHO05D006170 1.4e-157 560.1 395 71.9
FAN24G0217 Fragaria x ananassa HOM05D005471 ORTHO05D006170 5.2e-157 558.1 390 73.3
CSS0040686 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 2.6e-156 555.8 396 71.0
Dinv39207 Davidia involucrata HOM05D005471 ORTHO05D006170 1.3e-155 553.5 396 70.5
Gohir.D05G215000 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.7e-155 553.1 395 71.9
Gorai.009G221700 Gossypium raimondii HOM05D005471 ORTHO05D006170 2.2e-155 552.7 395 71.6
Sc02g0008090 Simmondsia chinensis HOM05D005471 ORTHO05D006170 8.3e-155 550.8 397 68.5
CSS0014765 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 2.0e-153 546.2 397 70.5
CiPaw.08G051800 Carya illinoinensis HOM05D005471 ORTHO05D006170 6.0e-153 544.7 411 69.6
CSS0038926 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 7.8e-153 544.3 420 66.7
Ah.05g166980 Amaranthus hybridus HOM05D005471 ORTHO05D006170 2.3e-152 542.7 400 69.0
TWI12G0997 Tripterygium wilfordii HOM05D005471 ORTHO05D006170 1.5e-151 540.0 397 70.0
ECA232G3342 Erigeron canadensis HOM05D005471 ORTHO05D006170 4.3e-151 538.5 397 69.5
HanXRQChr15g0493081 Helianthus annuus HOM05D005471 ORTHO05D006170 9.5e-151 537.3 398 68.1
MBI16_g27035_MAGBIO Magnolia biondii HOM05D005471 ORTHO05D006170 4.7e-150 535.0 441 63.5
HanXRQChr09g0254061 Helianthus annuus HOM05D005471 ORTHO05D006170 3.1e-149 532.3 397 68.0
Duzib093G1789 Durio zibethinus HOM05D005471 ORTHO05D006170 4.0e-149 531.9 395 68.6
Aqoxy6G02473 Aquilegia oxysepala HOM05D005471 ORTHO05D006170 6.8e-149 531.2 395 66.8
SGA_v2.0_scaffold74G24542 Striga asiatica HOM05D005471 ORTHO05D006170 2.2e-147 526.2 401 66.6
Sp2g05030 Schrenkiella parvula HOM05D005471 ORTHO05D006170 8.3e-147 524.2 393 66.4
Migut.C00408 Erythranthe guttata HOM05D005471 ORTHO05D006170 1.1e-146 523.9 401 65.8
CARHR283850 Cardamine hirsuta HOM05D005471 ORTHO05D006170 1.9e-146 523.1 393 65.9
Solyc04g077560.3 Solanum lycopersicum HOM05D005471 ORTHO05D006170 1.9e-146 523.1 394 68.3
PGSC0003DMG400004915 Solanum tuberosum HOM05D005471 ORTHO05D006170 3.2e-146 522.3 394 68.3
Sopen04g031200 Solanum pennellii HOM05D005471 ORTHO05D006170 4.1e-146 521.9 394 68.0
EL10Ac1g02354 Beta vulgaris HOM05D005471 ORTHO05D006170 9.2e-146 520.8 393 66.9
Cc10_g07570 Coffea canephora HOM05D005471 ORTHO05D006170 6.0e-145 518.1 389 66.1
Rhsim06G0064300 Rhododendron simsii HOM05D005471 ORTHO05D006170 1.0e-144 517.3 387 68.7
BcaC09g49476 Brassica carinata HOM05D005471 ORTHO05D006170 2.3e-144 516.2 393 65.1
CDE02G4131 Ceratophyllum demersum HOM05D005471 ORTHO05D006170 3.0e-144 515.8 392 66.3
Gohir.D06G026900 Gossypium hirsutum HOM05D005471 ORTHO05D006170 3.0e-144 515.8 356 74.2
THA.LOC104819922 Tarenaya hassleriana HOM05D005471 ORTHO05D006170 5.1e-144 515.0 397 64.2
AT1G59520 Arabidopsis thaliana HOM05D005471 ORTHO05D006170 6.6e-144 514.6 393 65.1
Carub.0002s0591 Capsella rubella HOM05D005471 ORTHO05D006170 6.6e-144 514.6 393 65.1
A01p28660 Brassica napus HOM05D005471 ORTHO05D006170 1.5e-140 503.4 390 64.6
ATR0739G016 Amborella trichopoda HOM05D005471 ORTHO05D006170 2.6e-140 502.7 388 65.2
C01p36310 Brassica napus HOM05D005471 ORTHO05D006170 7.6e-140 501.1 386 64.8
MSTRG.25028 Avicennia marina HOM05D005471 ORTHO05D006170 2.2e-139 499.6 398 64.6
BolC1t03588H Brassica oleracea HOM05D005471 ORTHO05D006170 3.7e-139 498.8 397 63.7
BraA01t03038Z Brassica rapa HOM05D005471 ORTHO05D006170 3.7e-139 498.8 397 63.7
PSO675G5405 Papaver somniferum HOM05D005471 ORTHO05D006170 1.1e-138 497.3 399 64.4
Gohir.A05G211700 Gossypium hirsutum HOM05D005471 ORTHO05D006170 2.4e-138 496.1 395 66.3
PSO541G0412 Papaver somniferum HOM05D005471 ORTHO05D006170 9.2e-138 494.2 396 65.2
PSO017G6379 Papaver somniferum HOM05D005471 ORTHO05D006170 1.6e-137 493.4 390 64.1
PSO170G6612 Papaver somniferum HOM05D005471 ORTHO05D006170 2.8e-134 482.6 390 63.1
BcaC09g49477 Brassica carinata HOM05D005471 ORTHO05D006170 3.1e-133 479.2 384 64.3
unitig_37.g13113 Utricularia gibba HOM05D005471 ORTHO05D006170 3.4e-132 475.7 405 62.2
Thhalv10023553m.g Eutrema salsugineum HOM05D005471 ORTHO05D006170 9.9e-132 474.2 393 61.1
PGR031G3068 Punica granatum HOM05D005471 ORTHO05D006170 5.1e-128 461.8 396 61.9
Aa31LG2G10610 Aethionema arabicum HOM05D005471 ORTHO05D006170 6.6e-128 461.5 409 59.7
Nitab4.5_0001426g0050 Nicotiana tabacum HOM05D005471 ORTHO05D006170 3.6e-126 455.7 429 58.5
HPP92_007709 Vanilla planifolia HOM05D005471 ORTHO05D006170 6.2e-126 454.9 392 60.5
DCAR_019346 Daucus carota HOM05D005471 ORTHO05D006170 1.9e-122 443.4 391 59.1
TAR625G0189 Trochodendron aralioides HOM05D005471 ORTHO05D006170 1.0e-120 437.6 307 72.0
Lj4A753G30 Lonicera japonica HOM05D005471 ORTHO05D006170 1.1e-119 434.1 375 61.1
Os07g0248800 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 1.6e-118 430.3 389 57.6
Os10g0102900 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 1.6e-118 430.3 389 57.8
Os04g0183100 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 8.1e-118 427.9 393 56.7
Lsat_1_v5_gn_1_56140 Lactuca sativa HOM05D001400 ORTHO05D001795 1.7e-115 420.2 386 59.1
AUR62035006 Chenopodium quinoa HOM05D005471 ORTHO05D006170 4.9e-115 418.7 397 56.9
Nitab4.5_0002796g0080 Nicotiana tabacum HOM05D005471 ORTHO05D006170 1.1e-114 417.5 413 57.1
BcaB04g20211 Brassica carinata HOM05D005471 ORTHO05D006170 4.2e-114 415.6 393 55.7
Potri.014G013500 Populus trichocarpa HOM05D005471 ORTHO05D006170 4.2e-114 415.6 269 75.5
Zm00001eb025640 Zea mays HOM05D005471 ORTHO05D006170 7.1e-114 414.8 394 55.8
Lsat_1_v5_gn_2_90520 Lactuca sativa HOM05D005471 ORTHO05D006170 8.1e-110 401.4 396 58.3
Peaxi162Scf00340g00069 Petunia axillaris HOM05D005471 ORTHO05D006170 9.3e-106 387.9 442 51.6
QL12p038448 Quercus lobata HOM05D005471 ORTHO05D006170 8.4e-99 364.8 307 61.2
Mapoly0067s0099 Marchantia polymorpha HOM05D005471 ORTHO05D006170 3.5e-97 359.4 396 50.5
Cpa.g.sc142.57 Carica papaya HOM05D005471 ORTHO05D006170 7.9e-97 358.2 304 62.8
Nitab4.5_0006888g0020 Nicotiana tabacum HOM05D005471 ORTHO05D006170 1.9e-95 353.6 426 49.8
Pp3c17_20680 Physcomitrium patens HOM05D005471 ORTHO05D006170 6.1e-89 332.0 383 48.6
AagrBONN_evm.TU.Sc2ySwM_368.1412 Anthoceros agrestis HOM05D005471 ORTHO05D006170 2.8e-86 323.2 389 45.8
vmacro21421 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 3.2e-82 309.7 294 55.4
SMO117G0302 Selaginella moellendorffii HOM05D005471 ORTHO05D006170 8.2e-78 295.0 378 42.6
DCAR_020058 Daucus carota HOM05D005471 ORTHO05D006170 1.1e-77 294.7 236 61.4
CBR_g49495 Chara braunii HOM05D005471 ORTHO05D006170 4.1e-77 292.7 416 40.6
Psat5g037200 Pisum sativum HOM05D005471 ORTHO05D006170 6.5e-67 258.8 155 81.3
Haze_22399 Corylus avellana HOM05D005471 ORTHO05D006170 1.6e-65 254.2 343 46.1
Haze_22407 Corylus avellana HOM05D005471 ORTHO05D006170 7.5e-63 245.4 357 44.3
AUR62037460 Chenopodium quinoa HOM05D005471 ORTHO05D006170 9.1e-61 238.4 247 50.2
vmacro21420 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 2.8e-49 200.3 156 68.6
Gohir.D04G027975 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.2e-36 158.3 109 73.4
Gorai.012G030800 Gossypium raimondii HOM05D005471 ORTHO05D006170 3.5e-36 156.8 109 72.5
Gohir.D12G192766 Gossypium hirsutum HOM05D005471 ORTHO05D006170 6.0e-36 156.0 109 73.4
Gohir.A12G016250 Gossypium hirsutum HOM05D005471 ORTHO05D006170 4.3e-34 149.8 109 70.6
QL12p038454 Quercus lobata HOM05D005471 ORTHO05D006170 2.0e-31 141.0 116 63.8
Phvul.009G072300 Phaseolus vulgaris HOM05D005471 ORTHO05D000997 2.9e-30 137.1 79 84.8
Hund05280 Selenicereus undatus HOM05D005471 ORTHO05D006170 1.4e-29 134.8 99 62.6
SHI08425 Sapria himalayana HOM05D005471 ORTHO05D006170 5.4e-29 132.9 125 53.6
Cpa.g.sc142.58 Carica papaya HOM05D005471 ORTHO05D006170 1.3e-27 128.3 86 72.1
Peaxi162Scf00448g00027 Petunia axillaris HOM05D005471 ORTHO05D006170 1.2e-25 121.7 124 58.1
DCAR_020059 Daucus carota HOM05D005471 ORTHO05D006170 4.4e-23 113.2 96 65.6
Gorai.001G227100 Gossypium raimondii HOM05D005471 ORTHO05D006170 2.1e-17 94.4 67 71.6
SEGI_08278 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 3.6e-17 93.6 106 46.2
Actinidia31832 Actinidia chinensis HOM05D006494 ORTHO05D007787 9.9e-15 85.5 56 69.6
Phvul.009G072333 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 6.4e-14 82.8 55 70.9
CAN.G213.23 Capsicum annuum HOM05D005471 ORTHO05D006170 3.2e-13 80.5 104 43.3
Cre07.g320250 Chlamydomonas reinhardtii HOM05D005471 ORTHO05D006170 1.0e-11 75.5 335 24.2
SEGI_29276 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 1.6e-09 68.2 77 53.2
Gohir.D11G128350 Gossypium hirsutum HOM05D005471 ORTHO05D006170 2.4e-08 64.3 49 65.3


User provided reference genes

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