Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0062481 Lupinus albus HOM05D001279 ORTHO05D238204 1.6e-35 152.1 72 100.0
Lalb_Chr23g0266841 Lupinus albus HOM05D001279 ORTHO05D001636 5.0e-13 77.4 43 83.7
Medtr3g100960 Medicago truncatula HOM05D001279 ORTHO05D001636 2.1e-11 72.0 43 79.1
Glyma.04G036000 Glycine max HOM05D001279 ORTHO05D001636 3.6e-11 71.2 43 79.1
Lj1g0012142 Lotus japonicus HOM05D001279 ORTHO05D001636 7.9e-11 70.1 43 74.4
TPR.G26065 Trifolium pratense HOM05D001279 ORTHO05D001636 1.0e-10 69.7 43 76.7
Phvul.009G062100 Phaseolus vulgaris HOM05D001279 ORTHO05D001636 1.8e-10 68.9 43 79.1
VMungo1309G3068 Vigna mungo HOM05D001279 ORTHO05D001636 5.1e-10 67.4 43 76.7
Ca_15978_v3 Cicer arietinum L. HOM05D001279 ORTHO05D001636 6.7e-10 67.0 43 74.4
Glyma.06G036100 Glycine max HOM05D001279 ORTHO05D001636 6.7e-10 67.0 43 74.4
CiPaw.15G066000 Carya illinoinensis HOM05D001279 ORTHO05D001636 2.5e-09 65.1 43 74.4
COL.COLO4_26433 Corchorus olitorius HOM05D001279 ORTHO05D001636 9.7e-09 63.2 43 72.1
PGR083G1077 Punica granatum HOM05D001279 ORTHO05D001636 9.7e-09 63.2 43 65.1
arahy.Tifrunner.gnm1.ann1.FS85WP Arachis hypogaea HOM05D001279 ORTHO05D001636 1.3e-08 62.8 43 69.8
arahy.Tifrunner.gnm1.ann1.IT7G4I Arachis hypogaea HOM05D001279 ORTHO05D001636 1.3e-08 62.8 43 69.8
Duzib116G0433 Durio zibethinus HOM05D001279 ORTHO05D009618 1.3e-08 62.8 42 71.4
Duzib093G1800 Durio zibethinus HOM05D001279 ORTHO05D009618 1.7e-08 62.4 42 71.4
Cfa018490 Carpinus fangiana HOM05D001279 ORTHO05D001636 2.2e-08 62.0 43 69.8
Haze_17584 Corylus avellana HOM05D001279 ORTHO05D001636 2.2e-08 62.0 43 69.8
BcaB06g28366 Brassica carinata HOM05D001279 ORTHO05D001636 8.2e-08 60.1 43 67.4
CiPaw.16G051000 Carya illinoinensis HOM05D001279 ORTHO05D001636 8.2e-08 60.1 41 65.9
AUR62033883 Chenopodium quinoa HOM05D001279 ORTHO05D001636 8.2e-08 60.1 43 62.8
BcaC02g08020 Brassica carinata HOM05D001279 ORTHO05D001636 1.1e-07 59.7 43 69.8
A04p23190 Brassica napus HOM05D001279 ORTHO05D001636 1.1e-07 59.7 43 69.8
C04p59340 Brassica napus HOM05D001279 ORTHO05D001636 1.1e-07 59.7 43 69.8
BolC4t27442H Brassica oleracea HOM05D001279 ORTHO05D001636 1.1e-07 59.7 43 69.8
BraA04t17846Z Brassica rapa HOM05D001279 ORTHO05D001636 1.1e-07 59.7 43 69.8
Lj4A777G65 Lonicera japonica HOM05D001279 ORTHO05D001636 1.1e-07 59.7 43 65.1
Ah.11g043430 Amaranthus hybridus HOM05D001279 ORTHO05D001636 1.4e-07 59.3 40 65.0
Hma1.2p1_0260F.1_g104570 Hydrangea macrophylla HOM05D001279 ORTHO05D001636 1.4e-07 59.3 43 67.4
EL10Ac1g01830 Beta vulgaris HOM05D001279 ORTHO05D001636 1.8e-07 58.9 43 65.1
AUR62040083 Chenopodium quinoa HOM05D001279 ORTHO05D001636 1.8e-07 58.9 43 60.5
Sp4g12990 Schrenkiella parvula HOM05D001279 ORTHO05D001636 1.8e-07 58.9 43 69.8
BcaB02g06765 Brassica carinata HOM05D001279 ORTHO05D001636 2.4e-07 58.5 25 96.0
BcaC05g24656 Brassica carinata HOM05D001279 ORTHO05D001636 2.4e-07 58.5 25 96.0
A10p05430 Brassica napus HOM05D001279 ORTHO05D001636 2.4e-07 58.5 25 96.0
C05p05010 Brassica napus HOM05D001279 ORTHO05D001636 2.4e-07 58.5 25 96.0
BolC5t29273H Brassica oleracea HOM05D001279 ORTHO05D001636 2.4e-07 58.5 25 96.0
BraA10t42807Z Brassica rapa HOM05D001279 ORTHO05D001636 2.4e-07 58.5 25 96.0
Gohir.D06G013500 Gossypium hirsutum HOM05D001279 ORTHO05D001636 2.4e-07 58.5 43 67.4
Gorai.010G016100 Gossypium raimondii HOM05D001279 ORTHO05D001636 2.4e-07 58.5 43 67.4
MD08G1040300 Malus domestica HOM05D001279 ORTHO05D001636 2.4e-07 58.5 43 67.4
Prupe.1G388900 Prunus persica HOM05D001279 ORTHO05D001636 2.4e-07 58.5 43 62.8
AL4G25320 Arabidopsis lyrata HOM05D001279 ORTHO05D001636 3.1e-07 58.2 43 69.8
AT2G30440 Arabidopsis thaliana HOM05D001279 ORTHO05D001636 3.1e-07 58.2 43 69.8
Thhalv10008025m.g Eutrema salsugineum HOM05D001279 ORTHO05D001636 3.1e-07 58.2 36 72.2
Thhalv10016873m.g Eutrema salsugineum HOM05D001279 ORTHO05D001636 3.1e-07 58.2 43 69.8
CARHR123880 Cardamine hirsuta HOM05D001279 ORTHO05D001636 4.1e-07 57.8 44 70.5
MD15G1034800 Malus domestica HOM05D001279 ORTHO05D001636 4.1e-07 57.8 43 65.1
Nitab4.5_0008935g0020 Nicotiana tabacum HOM05D001279 ORTHO05D001636 4.1e-07 57.8 43 67.4
GSVIVG01009580001 Vitis vinifera HOM05D001279 ORTHO05D001636 4.1e-07 57.8 43 62.8
BolC8t52624H Brassica oleracea HOM05D001279 ORTHO05D001636 5.3e-07 57.4 25 96.0
Gohir.A06G015400 Gossypium hirsutum HOM05D001279 ORTHO05D001636 5.3e-07 57.4 43 67.4
Potri.014G036400 Populus trichocarpa HOM05D001279 ORTHO05D001636 5.3e-07 57.4 25 96.0
Hund20787 Selenicereus undatus HOM05D001279 ORTHO05D001636 5.3e-07 57.4 25 96.0
BcaC07g42541 Brassica carinata HOM05D001279 ORTHO05D001636 6.9e-07 57.0 25 92.0
BcaC07g42545 Brassica carinata HOM05D001279 ORTHO05D001636 6.9e-07 57.0 25 92.0
A09p66730 Brassica napus HOM05D001279 ORTHO05D001636 6.9e-07 57.0 25 92.0
C08p50960 Brassica napus HOM05D001279 ORTHO05D001636 6.9e-07 57.0 25 92.0
BraA09t42012Z Brassica rapa HOM05D001279 ORTHO05D001636 6.9e-07 57.0 25 92.0
Carub.0004s1161 Capsella rubella HOM05D001279 ORTHO05D001636 6.9e-07 57.0 43 67.4
Sp1g05590 Schrenkiella parvula HOM05D001279 ORTHO05D001636 6.9e-07 57.0 25 92.0
Actinidia29855 Actinidia chinensis HOM05D001279 ORTHO05D001636 9.1e-07 56.6 43 69.8
Manes.05G169200 Manihot esculenta HOM05D001279 ORTHO05D001636 9.1e-07 56.6 43 60.5
Aa31LG1G7950 Aethionema arabicum HOM05D001279 ORTHO05D001636 1.2e-06 56.2 25 88.0
Cpa.g.sc357.9 Carica papaya HOM05D001279 ORTHO05D001636 1.2e-06 56.2 25 92.0
Migut.N01484 Erythranthe guttata HOM05D001279 ORTHO05D001636 1.2e-06 56.2 25 92.0
FvH4_2g40680 Fragaria vesca HOM05D001279 ORTHO05D001636 1.2e-06 56.2 32 71.9
FAN15G3587 Fragaria x ananassa HOM05D001279 ORTHO05D001636 1.2e-06 56.2 32 71.9
FAN20G0232 Fragaria x ananassa HOM05D001279 ORTHO05D001636 1.2e-06 56.2 32 71.9
FAN20G1724 Fragaria x ananassa HOM05D001279 ORTHO05D001636 1.2e-06 56.2 32 71.9
FAN27G0688 Fragaria x ananassa HOM05D001279 ORTHO05D001636 1.2e-06 56.2 32 71.9
Oeu006159.1 Olea europaea HOM05D001279 ORTHO05D001636 1.2e-06 56.2 25 92.0
RcHm_v2.0_Chr6g0299931 Rosa chinensis HOM05D001279 ORTHO05D001636 1.2e-06 56.2 32 71.9
Solyc04g079550.4 Solanum lycopersicum HOM05D001279 ORTHO05D001636 1.2e-06 56.2 43 65.1
Sopen04g033130 Solanum pennellii HOM05D001279 ORTHO05D001636 1.2e-06 56.2 43 65.1
PGSC0003DMG401011681 Solanum tuberosum HOM05D001279 ORTHO05D001636 1.2e-06 56.2 43 65.1
THA.LOC104798781 Tarenaya hassleriana HOM05D001279 ORTHO05D001636 1.2e-06 56.2 25 92.0
Cc10_g03740 Coffea canephora HOM05D001279 ORTHO05D001636 1.5e-06 55.8 25 92.0
MBI16_g19898_MAGBIO Magnolia biondii HOM05D001279 ORTHO05D001636 1.5e-06 55.8 43 58.1
Medtr2g059220 Medicago truncatula HOM05D001279 ORTHO05D001636 1.5e-06 55.8 34 70.6
Nitab4.5_0000068g0170 Nicotiana tabacum HOM05D001279 ORTHO05D001636 1.5e-06 55.8 25 92.0
SalBow8G2826 Salvia bowleyana HOM05D001279 ORTHO05D001636 1.5e-06 55.8 25 92.0
THA.LOC104815189 Tarenaya hassleriana HOM05D001279 ORTHO05D001636 1.5e-06 55.8 36 69.4
CsaV3_4G033950 Cucumis sativus L. HOM05D001279 ORTHO05D001636 2.0e-06 55.5 26 84.6
Lsat_1_v5_gn_1_19240 Lactuca sativa HOM05D001279 ORTHO05D001636 2.0e-06 55.5 25 84.0
Peaxi162Scf01514g00022 Petunia axillaris HOM05D001279 ORTHO05D001636 2.0e-06 55.5 25 88.0
Sed0018760 Sechium edule HOM05D001279 ORTHO05D001636 2.0e-06 55.5 25 88.0
SGA_v2.0_scaffold457G51935 Striga asiatica HOM05D001279 ORTHO05D001636 2.0e-06 55.5 25 92.0
Actinidia38044 Actinidia chinensis HOM05D001279 ORTHO05D001636 2.6e-06 55.1 25 92.0
MSTRG.1321 Avicennia marina HOM05D001279 ORTHO05D001636 2.6e-06 55.1 25 92.0
CSS0048313 Camellia sinensis var. sinensis HOM05D001279 ORTHO05D001636 2.6e-06 55.1 25 92.0
Dinv36008 Davidia involucrata HOM05D001279 ORTHO05D001636 2.6e-06 55.1 25 92.0
Lj1P1067T11 Lonicera japonica HOM05D001279 ORTHO05D001636 2.6e-06 55.1 43 62.8
Lj4A49G68 Lonicera japonica HOM05D001279 ORTHO05D001636 2.6e-06 55.1 43 62.8
Sabra14G0026200 Salix brachista HOM05D001279 ORTHO05D001636 2.6e-06 55.1 25 92.0
AL1G16890 Arabidopsis lyrata HOM05D001279 ORTHO05D001636 3.4e-06 54.7 24 91.7
AT1G06870 Arabidopsis thaliana HOM05D001279 ORTHO05D001636 3.4e-06 54.7 24 91.7
CSS0004889 Camellia sinensis var. sinensis HOM05D001279 ORTHO05D001636 3.4e-06 54.7 25 88.0
CSS0007824 Camellia sinensis var. sinensis HOM05D001279 ORTHO05D001636 3.4e-06 54.7 25 88.0
Carub.0001s0617 Capsella rubella HOM05D001279 ORTHO05D001636 3.4e-06 54.7 24 91.7
Migut.N02686 Erythranthe guttata HOM05D001279 ORTHO05D001636 3.4e-06 54.7 25 88.0
Eucgr.F00038 Eucalyptus grandis HOM05D001279 ORTHO05D001636 3.4e-06 54.7 25 88.0
Gohir.D05G202100 Gossypium hirsutum HOM05D001279 ORTHO05D001636 3.4e-06 54.7 43 65.1
Gorai.009G208000 Gossypium raimondii HOM05D001279 ORTHO05D001636 3.4e-06 54.7 43 65.1
Hma1.2p1_0337F.1_g129160 Hydrangea macrophylla HOM05D001279 ORTHO05D001636 3.4e-06 54.7 25 88.0
SalBow7G2816 Salvia bowleyana HOM05D001279 ORTHO05D001636 3.4e-06 54.7 25 88.0
Sed0000371 Sechium edule HOM05D001279 ORTHO05D001636 3.4e-06 54.7 25 88.0
TAR628G0657 Trochodendron aralioides HOM05D001279 ORTHO05D001636 3.4e-06 54.7 43 58.1
MSTRG.24316 Avicennia marina HOM05D001279 ORTHO05D001636 4.5e-06 54.3 25 84.0
CDE02G3118 Ceratophyllum demersum HOM05D001279 ORTHO05D001636 7.7e-06 53.5 30 70.0
HanXRQChr04g0104241 Helianthus annuus HOM05D001279 ORTHO05D001636 7.7e-06 53.5 25 84.0


User provided reference genes

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