Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0062471 Lupinus albus HOM05D004388 ORTHO05D005106 1.6e-59 232.6 126 100.0
Glyma.04G035900 Glycine max HOM05D004388 ORTHO05D005106 6.0e-46 187.6 126 78.6
Glyma.06G035900 Glycine max HOM05D004388 ORTHO05D005106 6.0e-46 187.6 126 79.4
Lalb_Chr08g0245721 Lupinus albus HOM05D004388 ORTHO05D005106 1.0e-45 186.8 127 80.3
Phvul.009G061900 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 5.0e-45 184.5 130 77.7
VMungo1309G1869 Vigna mungo HOM05D004388 ORTHO05D005106 8.9e-42 173.7 128 75.8
arahy.Tifrunner.gnm1.ann1.2I4SWN Arachis hypogaea HOM05D004388 ORTHO05D005106 3.5e-38 161.8 133 72.2
Lj1g0026402 Lotus japonicus HOM05D004388 ORTHO05D005106 6.6e-37 157.5 129 70.5
Manes.05G168800 Manihot esculenta HOM05D004388 ORTHO05D005106 6.2e-35 151.0 126 62.7
Glyma.07G163600 Glycine max HOM05D004388 ORTHO05D005106 2.2e-32 142.5 126 67.5
Cfa018482 Carpinus fangiana HOM05D004388 ORTHO05D005106 1.1e-31 140.2 126 61.1
Potri.014G037000 Populus trichocarpa HOM05D004388 ORTHO05D005106 2.4e-31 139.0 126 60.3
Glyma.20G008600 Glycine max HOM05D004388 ORTHO05D005106 7.1e-31 137.5 125 63.2
QL03p018404 Quercus lobata HOM05D004388 ORTHO05D005106 2.1e-30 136.0 124 62.9
TAR376G0986 Trochodendron aralioides HOM05D004388 ORTHO05D005106 2.1e-30 136.0 124 59.7
Sabra09G0082900 Salix brachista HOM05D004388 ORTHO05D005106 2.7e-30 135.6 123 60.2
QL11p039202 Quercus lobata HOM05D004388 ORTHO05D005106 7.8e-30 134.0 124 61.3
CiPaw.16G051700 Carya illinoinensis HOM05D004388 ORTHO05D005106 1.3e-29 133.3 106 67.9
Gohir.D02G236000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.7e-29 132.9 124 58.9
Thecc.02G028000 Theobroma cacao HOM05D004388 ORTHO05D005106 1.7e-29 132.9 124 58.9
TWI56G1138 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 1.7e-29 132.9 126 56.3
GSVIVG01009587001 Vitis vinifera HOM05D004388 ORTHO05D005106 2.3e-29 132.5 126 58.7
ClCG02G005540 Citrullus lanatus HOM05D004388 ORTHO05D005106 3.0e-29 132.1 126 65.1
Manes.15G145400 Manihot esculenta HOM05D004388 ORTHO05D005106 3.0e-29 132.1 125 59.2
Nn5g29406 Nelumbo nucifera HOM05D004388 ORTHO05D005106 3.0e-29 132.1 127 62.2
Ah.09g229630 Amaranthus hybridus HOM05D004388 ORTHO05D005106 3.9e-29 131.7 123 61.8
CSS0016442 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 3.9e-29 131.7 125 64.0
Sabra14G0026600 Salix brachista HOM05D004388 ORTHO05D005106 5.1e-29 131.3 126 57.1
CiPaw.05G058500 Carya illinoinensis HOM05D004388 ORTHO05D005106 6.6e-29 131.0 121 60.3
Cc02_g18220 Coffea canephora HOM05D004388 ORTHO05D005106 6.6e-29 131.0 126 60.3
Gorai.005G264100 Gossypium raimondii HOM05D004388 ORTHO05D005106 6.6e-29 131.0 124 58.1
CSS0020304 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 8.6e-29 130.6 125 61.6
Cfa004944 Carpinus fangiana HOM05D004388 ORTHO05D005106 8.6e-29 130.6 96 71.9
MELO3C018419.2 Cucumis melo HOM05D004388 ORTHO05D005106 8.6e-29 130.6 126 64.3
FvH4_7g04430 Fragaria vesca HOM05D004388 ORTHO05D005106 1.5e-28 129.8 125 59.2
FAN06G3575 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.5e-28 129.8 125 59.2
Cpa.g.sc64.17 Carica papaya HOM05D004388 ORTHO05D005106 2.5e-28 129.0 126 59.5
FAN06G4461 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.5e-28 129.0 125 59.2
EL10Ac1g01755 Beta vulgaris HOM05D004388 ORTHO05D005106 3.3e-28 128.6 115 62.6
Duzib052G1120 Durio zibethinus HOM05D004388 ORTHO05D005106 3.3e-28 128.6 124 57.3
Phvul.003G011200 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 3.3e-28 128.6 126 61.1
Potri.004G147300 Populus trichocarpa HOM05D004388 ORTHO05D005106 3.3e-28 128.6 123 57.7
TAR625G0696 Trochodendron aralioides HOM05D004388 ORTHO05D005106 3.3e-28 128.6 121 62.0
Duzib248G0675 Durio zibethinus HOM05D004388 ORTHO05D005106 4.3e-28 128.3 119 57.1
FAN03G2535 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.3e-28 128.3 123 60.2
FAN15G0910 Fragaria x ananassa HOM05D004388 ORTHO05D005106 5.6e-28 127.9 120 60.0
Gohir.A03G214500 Gossypium hirsutum HOM05D004388 ORTHO05D005106 5.6e-28 127.9 124 57.3
Nn6g32144 Nelumbo nucifera HOM05D004388 ORTHO05D005106 5.6e-28 127.9 129 58.1
Potri.009G108700 Populus trichocarpa HOM05D004388 ORTHO05D005106 5.6e-28 127.9 123 56.9
Lsat_1_v5_gn_7_88020 Lactuca sativa HOM05D004388 ORTHO05D005106 7.3e-28 127.5 124 59.7
Oeu034076.1 Olea europaea HOM05D004388 ORTHO05D005106 9.6e-28 127.1 122 62.3
COL.COLO4_26416 Corchorus olitorius HOM05D004388 ORTHO05D005106 1.2e-27 126.7 132 55.3
FvH4_2g07330 Fragaria vesca HOM05D004388 ORTHO05D005106 1.2e-27 126.7 123 59.3
FAN24G3543 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.2e-27 126.7 123 59.3
FAN27G3490 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.2e-27 126.7 123 59.3
Gorai.002G214600 Gossypium raimondii HOM05D004388 ORTHO05D005106 1.2e-27 126.7 121 59.5
VMungo1215G1405 Vigna mungo HOM05D004388 ORTHO05D005106 1.6e-27 126.3 112 61.6
FAN10G0172 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.1e-27 125.9 125 58.4
Gohir.D01G173000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 2.1e-27 125.9 116 61.2
Gohir.A01G181900 Gossypium hirsutum HOM05D004388 ORTHO05D005106 2.8e-27 125.6 116 61.2
Lalb_Chr10g0095391 Lupinus albus HOM05D004388 ORTHO05D005106 2.8e-27 125.6 118 64.4
THA.LOC104803691 Tarenaya hassleriana HOM05D004388 ORTHO05D005106 2.8e-27 125.6 127 54.3
CAN.G322.84 Capsicum annuum HOM05D004388 ORTHO05D005106 3.6e-27 125.2 126 61.9
AUR62033874 Chenopodium quinoa HOM05D004388 ORTHO05D005106 3.6e-27 125.2 105 65.7
AUR62040093 Chenopodium quinoa HOM05D004388 ORTHO05D005106 3.6e-27 125.2 126 59.5
COL.COLO4_17768 Corchorus olitorius HOM05D004388 ORTHO05D005106 3.6e-27 125.2 126 60.3
CsaV3_7G010090 Cucumis sativus L. HOM05D004388 ORTHO05D005106 3.6e-27 125.2 126 61.9
Dinv36015 Davidia involucrata HOM05D004388 ORTHO05D005106 3.6e-27 125.2 127 55.1
RcHm_v2.0_Chr3g0487591 Rosa chinensis HOM05D004388 ORTHO05D005106 3.6e-27 125.2 125 57.6
Hma1.2p1_1527F.1_g289065 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 4.7e-27 124.8 125 57.6
Ciclev10030439m.g Citrus clementina HOM05D004388 ORTHO05D005106 6.2e-27 124.4 126 57.1
FAN26G1198 Fragaria x ananassa HOM05D004388 ORTHO05D005106 6.2e-27 124.4 123 59.3
FAN28G0470 Fragaria x ananassa HOM05D004388 ORTHO05D005106 6.2e-27 124.4 123 59.3
MBI16_g31481_MAGBIO Magnolia biondii HOM05D004388 ORTHO05D005106 6.2e-27 124.4 103 59.2
CSS0032006 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 8.1e-27 124.0 105 63.8
FvH4_1g27200 Fragaria vesca HOM05D004388 ORTHO05D005106 8.1e-27 124.0 123 58.5
Gorai.010G015700 Gossypium raimondii HOM05D004388 ORTHO05D005106 1.1e-26 123.6 128 55.5
Ca_12477_v3 Cicer arietinum L. HOM05D004388 ORTHO05D005106 2.4e-26 122.5 108 63.0
FAN23G2994 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.4e-26 122.5 123 58.5
Prupe.8G112900 Prunus persica HOM05D004388 ORTHO05D005106 2.4e-26 122.5 122 59.0
Sp4g07480 Schrenkiella parvula HOM05D004388 ORTHO05D005106 2.4e-26 122.5 114 60.5
Thecc.08G017000 Theobroma cacao HOM05D004388 ORTHO05D005106 2.4e-26 122.5 130 52.3
FAN19G2330 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.1e-26 122.1 123 57.7
FAN28G0922 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.1e-26 122.1 123 58.5
Sed0011034 Sechium edule HOM05D004388 ORTHO05D005106 3.1e-26 122.1 123 58.5
Sopen10g022090 Solanum pennellii HOM05D004388 ORTHO05D005106 3.1e-26 122.1 126 58.7
Duzib248G1645 Durio zibethinus HOM05D004388 ORTHO05D005106 5.2e-26 121.3 124 57.3
Duzib248G0127 Durio zibethinus HOM05D004388 ORTHO05D005106 8.9e-26 120.6 124 57.3
Thhalv10001257m.g Eutrema salsugineum HOM05D004388 ORTHO05D005106 8.9e-26 120.6 106 61.3
Sc15g0006590 Simmondsia chinensis HOM05D004388 ORTHO05D005106 8.9e-26 120.6 106 63.2
PGSC0003DMG400006208 Solanum tuberosum HOM05D004388 ORTHO05D005106 8.9e-26 120.6 126 58.7
BcaC07g40816 Brassica carinata HOM05D004388 ORTHO05D005106 1.2e-25 120.2 114 60.5
C08p38090 Brassica napus HOM05D004388 ORTHO05D005106 1.2e-25 120.2 114 60.5
BolC8t51384H Brassica oleracea HOM05D004388 ORTHO05D005106 1.2e-25 120.2 114 60.5
CANSAT25G3863 Cannabis sativa HOM05D004388 ORTHO05D005106 1.2e-25 120.2 124 54.8
MD05G1072400 Malus domestica HOM05D004388 ORTHO05D005106 1.2e-25 120.2 124 54.8
PSO170G0356 Papaver somniferum HOM05D004388 ORTHO05D005106 1.2e-25 120.2 126 57.9
BcaB01g03018 Brassica carinata HOM05D004388 ORTHO05D005106 1.5e-25 119.8 113 58.4
Lalb_Chr01g0003011 Lupinus albus HOM05D004388 ORTHO05D005106 1.5e-25 119.8 102 65.7
Peaxi162Scf00684g00563 Petunia axillaris HOM05D004388 ORTHO05D005106 1.5e-25 119.8 124 60.5
TWI12G0249 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 1.5e-25 119.8 129 58.1
Duzib132G0841 Durio zibethinus HOM05D004388 ORTHO05D005106 2.0e-25 119.4 126 54.8
Solyc01g109040.4 Solanum lycopersicum HOM05D004388 ORTHO05D005106 2.0e-25 119.4 126 60.3
PGSC0003DMG402025831 Solanum tuberosum HOM05D004388 ORTHO05D005106 2.0e-25 119.4 126 59.5
CARHR118500 Cardamine hirsuta HOM05D004388 ORTHO05D005106 2.6e-25 119.0 125 54.4
Nitab4.5_0001401g0180 Nicotiana tabacum HOM05D004388 ORTHO05D005106 2.6e-25 119.0 120 62.5
Sopen01g051240 Solanum pennellii HOM05D004388 ORTHO05D005106 2.6e-25 119.0 126 59.5
Atru.BG.71.p Acer truncatum HOM05D004388 ORTHO05D005106 3.4e-25 118.6 94 69.1
Aqoxy6G00936 Aquilegia oxysepala HOM05D004388 ORTHO05D005106 4.4e-25 118.2 124 54.8
Nitab4.5_0008194g0060 Nicotiana tabacum HOM05D004388 ORTHO05D005106 4.4e-25 118.2 120 61.7
PSO541G0781 Papaver somniferum HOM05D004388 ORTHO05D005106 4.4e-25 118.2 110 62.7
Aa31LG5G9370 Aethionema arabicum HOM05D004388 ORTHO05D005106 7.6e-25 117.5 113 60.2
Carub.0004s0666 Capsella rubella HOM05D004388 ORTHO05D005106 7.6e-25 117.5 126 54.8
AL4G19340 Arabidopsis lyrata HOM05D004388 ORTHO05D005106 9.9e-25 117.1 126 54.8
A09p55160 Brassica napus HOM05D004388 ORTHO05D005106 9.9e-25 117.1 114 59.6
BraA09t40924Z Brassica rapa HOM05D004388 ORTHO05D005106 9.9e-25 117.1 114 59.6
Migut.B00292 Erythranthe guttata HOM05D004388 ORTHO05D005106 1.3e-24 116.7 121 58.7
AT2G26500 Arabidopsis thaliana HOM05D004388 ORTHO05D005106 2.2e-24 115.9 126 54.0
DCAR_001610 Daucus carota HOM05D004388 ORTHO05D005106 2.2e-24 115.9 113 58.4
PGR042G3241 Punica granatum HOM05D004388 ORTHO05D005106 2.9e-24 115.5 105 63.8
HanXRQChr16g0506081 Helianthus annuus HOM05D004388 ORTHO05D005106 6.4e-24 114.4 125 55.2
Peaxi162Scf00016g01338 Petunia axillaris HOM05D004388 ORTHO05D005106 6.4e-24 114.4 111 64.0
Hma1.2p1_0584F.1_g183220 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 8.4e-24 114.0 128 56.2
SalBow6G5992 Salvia bowleyana HOM05D004388 ORTHO05D005106 1.1e-23 113.6 121 57.0
ATR0733G197 Amborella trichopoda HOM05D004388 ORTHO05D005106 1.9e-23 112.8 123 56.9
Medtr1g034260 Medicago truncatula HOM05D004388 ORTHO05D005106 1.9e-23 112.8 121 57.9
DCAR_000094 Daucus carota HOM05D004388 ORTHO05D005106 2.4e-23 112.5 111 58.6
DCAR_029046 Daucus carota HOM05D004388 ORTHO05D005106 2.4e-23 112.5 111 58.6
Eucgr.G01518 Eucalyptus grandis HOM05D004388 ORTHO05D005106 3.2e-23 112.1 123 54.5
MSTRG.20123 Avicennia marina HOM05D004388 ORTHO05D005106 4.2e-23 111.7 111 58.6
ECA236G2461 Erigeron canadensis HOM05D004388 ORTHO05D005106 4.2e-23 111.7 126 54.0
HanXRQChr04g0128391 Helianthus annuus HOM05D004388 ORTHO05D005106 7.1e-23 110.9 125 56.0
TWI36G1636 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 1.6e-22 109.8 129 51.2
FAN20G1062 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.1e-22 109.4 100 61.0
unitig_21.g20762 Utricularia gibba HOM05D004388 ORTHO05D005106 3.5e-22 108.6 124 50.0
MD10G1086700 Malus domestica HOM05D004388 ORTHO05D005106 6.0e-22 107.8 109 56.9
arahy.Tifrunner.gnm1.ann1.RG9LRA Arachis hypogaea HOM05D004388 ORTHO05D005106 7.8e-22 107.5 121 54.5
HPP92_017776 Vanilla planifolia HOM05D004388 ORTHO05D005106 5.1e-21 104.8 124 49.2
unitig_744.g24243 Utricularia gibba HOM05D004388 ORTHO05D005106 6.6e-21 104.4 124 49.2
unitig_0.g849 Utricularia gibba HOM05D004388 ORTHO05D005106 1.9e-20 102.8 121 52.1
Psat6g097040 Pisum sativum HOM05D004388 ORTHO05D005106 2.5e-20 102.4 123 51.2
arahy.Tifrunner.gnm1.ann1.ISKM3Z Arachis hypogaea HOM05D004388 ORTHO05D005106 3.3e-20 102.1 122 52.5
Actinidia00479 Actinidia chinensis HOM05D000395 ORTHO05D005106 6.2e-19 97.8 126 45.2
Potri.002G130000 Populus trichocarpa HOM05D004388 ORTHO05D005106 3.1e-18 95.5 107 51.4
SGA_v2.0_scaffold58G20597 Striga asiatica HOM05D004388 ORTHO05D005106 4.0e-18 95.1 117 48.7
Eucgr.I01216 Eucalyptus grandis HOM05D004388 ORTHO05D005106 9.0e-18 94.0 105 49.5
Os03g0765900 Oryza sativa ssp. japonica HOM05D004388 ORTHO05D005106 3.4e-17 92.0 123 44.7
Pp3c5_10730 Physcomitrium patens HOM05D004388 ORTHO05D005106 3.8e-16 88.6 122 45.9
Pp3c6_20300 Physcomitrium patens HOM05D004388 ORTHO05D005106 2.4e-15 85.9 108 46.3
TPR.G40836 Trifolium pratense HOM05D004388 ORTHO05D005106 2.4e-15 85.9 74 63.5
AagrBONN_evm.TU.Sc2ySwM_228.5818 Anthoceros agrestis HOM05D004388 ORTHO05D005106 9.3e-15 84.0 94 52.1
Rhsim05G0079000 Rhododendron simsii HOM05D004388 ORTHO05D005106 9.3e-15 84.0 127 48.0
Zm00001eb058590 Zea mays HOM05D004388 ORTHO05D005106 1.6e-14 83.2 116 42.2
Zm00001eb214080 Zea mays HOM05D004388 ORTHO05D005106 2.7e-14 82.4 104 46.2
CDE01G0191 Ceratophyllum demersum HOM05D004388 ORTHO05D005106 3.9e-13 78.6 50 84.0
BcaB08g35304 Brassica carinata HOM05D004388 ORTHO05D005106 9.6e-12 73.9 54 74.1
Mapoly0043s0110 Marchantia polymorpha HOM05D004388 ORTHO05D005106 2.1e-11 72.8 108 41.7
Oeu010570.1 Olea europaea HOM05D000395 ORTHO05D000088 2.4e-10 69.3 75 58.7
CBR_g48936 Chara braunii HOM05D004388 ORTHO05D005106 3.4e-09 65.5 96 40.6
Psat4g068600 Pisum sativum HOM05D004388 ORTHO05D005106 4.5e-09 65.1 101 43.6
SMO361G0239 Selaginella moellendorffii HOM05D004388 ORTHO05D005106 2.2e-08 62.8 107 37.4
GSVIVG01031853001 Vitis vinifera HOM05D008110 ORTHO05D005106 3.5e-06 55.5 71 46.5


User provided reference genes

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