Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0062371 Lupinus albus HOM05D006576 ORTHO05D008644 0.0e+00 1364.7 648 100.0
Glyma.06G033200 Glycine max HOM05D006576 ORTHO05D008644 0.0e+00 1262.3 651 91.7
Lj1g0002309 Lotus japonicus HOM05D006576 ORTHO05D008644 0.0e+00 1244.2 651 90.0
VMungo1309G2241 Vigna mungo HOM05D006576 ORTHO05D008644 0.0e+00 1242.6 647 90.4
Phvul.009G056900 Phaseolus vulgaris HOM05D006576 ORTHO05D008644 0.0e+00 1233.0 650 89.5
Medtr3g111730 Medicago truncatula HOM05D006576 ORTHO05D008644 0.0e+00 1216.1 650 88.8
Ca_15522_v3 Cicer arietinum L. HOM05D006576 ORTHO05D008644 0.0e+00 1207.6 641 89.5
arahy.Tifrunner.gnm1.ann1.G51JN1 Arachis hypogaea HOM05D006576 ORTHO05D008644 0.0e+00 1207.2 651 87.4
arahy.Tifrunner.gnm1.ann1.N2LUF1 Arachis hypogaea HOM05D006576 ORTHO05D008644 0.0e+00 1206.8 651 87.4
Psat0s4808g0040 Pisum sativum HOM05D006576 ORTHO05D008644 0.0e+00 1191.4 669 84.5
Manes.11G048300 Manihot esculenta HOM05D006576 ORTHO05D008644 0.0e+00 1164.8 651 83.1
Glyma.04G033200 Glycine max HOM05D006576 ORTHO05D008644 0.0e+00 1156.4 594 91.1
RcHm_v2.0_Chr6g0300731 Rosa chinensis HOM05D006576 ORTHO05D008644 0.0e+00 1151.3 651 81.3
FvH4_2g40020 Fragaria vesca HOM05D006576 ORTHO05D008644 0.0e+00 1150.6 651 81.0
MD15G1029800 Malus domestica HOM05D006576 ORTHO05D008644 0.0e+00 1150.2 652 81.0
Thecc.08G024000 Theobroma cacao HOM05D006576 ORTHO05D008644 0.0e+00 1147.5 643 82.7
TAR381G1568 Trochodendron aralioides HOM05D006576 ORTHO05D008644 0.0e+00 1145.2 652 80.4
QL02p007885 Quercus lobata HOM05D006576 ORTHO05D008644 0.0e+00 1144.8 691 77.9
TWI36G0276 Tripterygium wilfordii HOM05D006576 ORTHO05D008644 0.0e+00 1144.4 651 81.6
Ciclev10003149m.g Citrus clementina HOM05D006576 ORTHO05D008644 0.0e+00 1143.3 648 81.0
Gorai.002G129100 Gossypium raimondii HOM05D006576 ORTHO05D008644 0.0e+00 1140.2 651 80.8
Sabra14G0140900 Salix brachista HOM05D006576 ORTHO05D008644 0.0e+00 1136.3 655 80.6
CsaV3_3G044990 Cucumis sativus L. HOM05D006576 ORTHO05D008644 0.0e+00 1134.0 651 80.6
Gohir.A01G116700 Gossypium hirsutum HOM05D006576 ORTHO05D008644 0.0e+00 1133.2 651 80.6
MD08G1033200 Malus domestica HOM05D006576 ORTHO05D008644 0.0e+00 1133.2 651 80.0
Potri.014G180700 Populus trichocarpa HOM05D006576 ORTHO05D008644 0.0e+00 1132.1 655 80.5
TWI12G0537 Tripterygium wilfordii HOM05D006576 ORTHO05D008644 0.0e+00 1132.1 651 79.9
MELO3C003867.2 Cucumis melo HOM05D006576 ORTHO05D008644 0.0e+00 1131.3 651 80.5
FAN27G3021 Fragaria x ananassa HOM05D006576 ORTHO05D008644 0.0e+00 1130.9 651 79.9
Gohir.D01G105100 Gossypium hirsutum HOM05D006576 ORTHO05D008644 0.0e+00 1129.8 642 81.0
ClCG05G019150 Citrullus lanatus HOM05D006576 ORTHO05D008644 0.0e+00 1127.5 644 81.1
Prupe.1G381700 Prunus persica HOM05D006576 ORTHO05D008644 0.0e+00 1127.1 652 80.1
Cpa.g.sc64.67 Carica papaya HOM05D006576 ORTHO05D008644 0.0e+00 1125.2 640 80.8
Sed0024937 Sechium edule HOM05D006576 ORTHO05D008644 0.0e+00 1124.8 653 80.2
Hma1.2p1_0203F.1_g086540 Hydrangea macrophylla HOM05D006576 ORTHO05D008644 0.0e+00 1120.1 647 79.0
Peaxi162Scf00690g00125 Petunia axillaris HOM05D006576 ORTHO05D008644 0.0e+00 1115.5 652 78.4
CiPaw.16G055000 Carya illinoinensis HOM05D006576 ORTHO05D008644 0.0e+00 1112.8 647 79.6
Cc10_g03100 Coffea canephora HOM05D006576 ORTHO05D008644 0.0e+00 1105.1 651 76.5
Solyc04g080140.4 Solanum lycopersicum HOM05D006576 ORTHO05D008644 0.0e+00 1104.0 652 77.6
Nitab4.5_0012039g0010 Nicotiana tabacum HOM05D006576 ORTHO05D008644 0.0e+00 1100.1 652 78.1
COL.COLO4_26345 Corchorus olitorius HOM05D006576 ORTHO05D008644 0.0e+00 1099.7 641 79.4
Nn1g05071 Nelumbo nucifera HOM05D006576 ORTHO05D008644 0.0e+00 1099.3 654 77.2
Lj4A42T76 Lonicera japonica HOM05D006576 ORTHO05D008644 0.0e+00 1098.6 663 77.2
MSTRG.25158 Avicennia marina HOM05D006576 ORTHO05D008644 0.0e+00 1097.8 651 77.0
CSS0022363 Camellia sinensis var. sinensis HOM05D006576 ORTHO05D008644 0.0e+00 1097.8 724 72.5
GSVIVG01009681001 Vitis vinifera HOM05D006576 ORTHO05D008644 0.0e+00 1097.0 640 80.5
HanXRQChr04g0105541 Helianthus annuus HOM05D006576 ORTHO05D008644 0.0e+00 1096.3 649 77.0
Rhsim06G0035200 Rhododendron simsii HOM05D006576 ORTHO05D008644 0.0e+00 1095.5 682 74.5
Sopen04g033720 Solanum pennellii HOM05D006576 ORTHO05D008644 0.0e+00 1093.2 643 77.9
Nitab4.5_0000110g0470 Nicotiana tabacum HOM05D006576 ORTHO05D008644 0.0e+00 1088.2 652 77.6
CAN.G1126.39 Capsicum annuum HOM05D006576 ORTHO05D008644 0.0e+00 1087.0 639 77.9
DCAR_019521 Daucus carota HOM05D006576 ORTHO05D008644 0.0e+00 1087.0 650 76.9
Atru.BG.235.p Acer truncatum HOM05D006576 ORTHO05D008644 0.0e+00 1083.9 634 80.8
Haze_17991 Corylus avellana HOM05D006576 ORTHO05D008644 0.0e+00 1083.2 805 66.1
Migut.C00705 Erythranthe guttata HOM05D006576 ORTHO05D008644 0.0e+00 1083.2 650 75.4
Actinidia15312 Actinidia chinensis HOM05D006576 ORTHO05D008644 0.0e+00 1082.4 613 81.4
Atru.chr13.516 Acer truncatum HOM05D006576 ORTHO05D008644 0.0e+00 1081.6 644 79.0
PGR083G0445 Punica granatum HOM05D006576 ORTHO05D008644 0.0e+00 1080.5 652 77.0
THA.LOC104822840 Tarenaya hassleriana HOM05D006576 ORTHO05D008644 0.0e+00 1080.5 649 76.7
Hund26593 Selenicereus undatus HOM05D006576 ORTHO05D008644 0.0e+00 1077.8 648 76.4
FAN20G0603 Fragaria x ananassa HOM05D006576 ORTHO05D008644 0.0e+00 1075.1 651 76.8
SalBow7G4023 Salvia bowleyana HOM05D006576 ORTHO05D008644 4.4e-312 1073.9 669 74.4
Lsat_1_v5_gn_1_17900 Lactuca sativa HOM05D006576 ORTHO05D008644 3.1e-311 1071.2 643 75.7
CSS0029857 Camellia sinensis var. sinensis HOM05D006576 ORTHO05D008644 2.8e-309 1064.7 598 82.6
EL10Ac1g01831 Beta vulgaris HOM05D006576 ORTHO05D008644 3.7e-309 1064.3 646 75.1
Aqoxy6G01046 Aquilegia oxysepala HOM05D006576 ORTHO05D008644 7.0e-308 1060.1 652 75.3
Sp1g33910 Schrenkiella parvula HOM05D006576 ORTHO05D008644 7.7e-307 1056.6 646 74.9
ECA247G3618 Erigeron canadensis HOM05D006576 ORTHO05D008644 6.5e-306 1053.5 613 78.0
Thhalv10011304m.g Eutrema salsugineum HOM05D006576 ORTHO05D008644 1.5e-305 1052.4 648 73.9
A08p06220 Brassica napus HOM05D006576 ORTHO05D008644 1.9e-305 1052.0 648 73.8
AUR62033848 Chenopodium quinoa HOM05D006576 ORTHO05D008644 2.5e-305 1051.6 650 74.5
BcaB04g17577 Brassica carinata HOM05D006576 ORTHO05D008644 5.5e-305 1050.4 641 73.9
SGA_v2.0_scaffold24G10239 Striga asiatica HOM05D006576 ORTHO05D008644 5.5e-305 1050.4 648 74.8
Ah.05g167470 Amaranthus hybridus HOM05D006576 ORTHO05D008644 7.2e-305 1050.0 650 74.2
BraA08t32625Z Brassica rapa HOM05D006576 ORTHO05D008644 9.4e-305 1049.7 648 73.5
Eucgr.F01554 Eucalyptus grandis HOM05D006576 ORTHO05D008644 3.6e-304 1047.7 656 74.1
AT1G45150 Arabidopsis thaliana HOM05D006576 ORTHO05D008644 2.0e-302 1042.0 646 73.7
Carub.0001s3555 Capsella rubella HOM05D006576 ORTHO05D008644 7.5e-302 1040.0 633 74.2
BcaC07g37274 Brassica carinata HOM05D006576 ORTHO05D008644 2.2e-301 1038.5 648 73.1
C08p07030 Brassica napus HOM05D006576 ORTHO05D008644 2.2e-301 1038.5 648 73.1
BolC8t47545H Brassica oleracea HOM05D006576 ORTHO05D008644 2.2e-301 1038.5 648 73.1
vmacro21626 Vaccinium macrocarpon HOM05D006576 ORTHO05D008644 2.0e-299 1031.9 794 64.0
PSO675G1390 Papaver somniferum HOM05D006576 ORTHO05D008644 1.0e-298 1029.6 646 72.9
ATR0733G192 Amborella trichopoda HOM05D006576 ORTHO05D008644 1.6e-296 1022.3 645 71.0
CANSAT25G2025 Cannabis sativa HOM05D006576 ORTHO05D008644 2.2e-293 1011.9 588 80.6
PSO541G0394 Papaver somniferum HOM05D006576 ORTHO05D008644 4.3e-289 997.7 646 71.7
Duzib093G2111 Durio zibethinus HOM05D006576 ORTHO05D008644 5.4e-284 980.7 652 72.1
Os07g0581300 Oryza sativa ssp. japonica HOM05D006576 ORTHO05D008644 6.0e-283 977.2 645 69.1
FAN15G1632 Fragaria x ananassa HOM05D006576 ORTHO05D008644 1.4e-276 956.1 643 71.7
AL1G52790 Arabidopsis lyrata HOM05D006576 ORTHO05D008644 5.6e-273 944.1 557 75.8
Zm00001eb107720 Zea mays HOM05D006576 ORTHO05D008644 1.2e-264 916.4 594 69.7
CDE04G1970 Ceratophyllum demersum HOM05D006576 ORTHO05D008644 2.1e-259 899.0 575 71.1
Sc02g0006340 Simmondsia chinensis HOM05D006576 ORTHO05D008644 7.6e-254 880.6 558 72.4
Mapoly0015s0075 Marchantia polymorpha HOM05D006576 ORTHO05D008644 4.9e-253 877.9 646 63.0
Pp3c21_15170 Physcomitrium patens HOM05D006576 ORTHO05D008644 1.9e-244 849.4 637 62.2
SMO367G0262 Selaginella moellendorffii HOM05D006576 ORTHO05D008644 1.2e-238 830.1 641 60.1
Hma1.2p1_0203F.1_g086550 Hydrangea macrophylla HOM05D006576 ORTHO05D008644 1.0e-210 737.3 513 68.8
CARHR036240 Cardamine hirsuta HOM05D006576 ORTHO05D008644 1.7e-192 676.8 363 80.2
Dinv36060 Davidia involucrata HOM05D006576 ORTHO05D008644 2.1e-179 633.3 372 81.2
Oeu005363.1 Olea europaea HOM05D006576 ORTHO05D008644 4.9e-168 595.5 378 74.9
unitig_578.g16727 Utricularia gibba HOM05D006576 ORTHO05D008644 1.6e-163 580.5 556 54.3
AUR62041679 Chenopodium quinoa HOM05D006576 ORTHO05D008644 2.4e-159 566.6 373 70.5
CBR_g55233 Chara braunii HOM05D006576 ORTHO05D008644 6.6e-141 505.4 534 48.9
AUR62041680 Chenopodium quinoa HOM05D006576 ORTHO05D008644 1.2e-121 441.4 241 80.1
CBR_g6514 Chara braunii HOM05D006576 ORTHO05D008644 4.2e-87 326.6 744 32.3
SEGI_38008 Sequoiadendron giganteum HOM05D006576 ORTHO05D008644 1.2e-76 292.0 152 82.9
SHI46795 Sapria himalayana HOM05D006576 ORTHO05D008644 7.2e-71 272.7 245 57.1
Lsat_1_v5_gn_3_960 Lactuca sativa HOM05D006576 ORTHO05D008644 9.5e-55 219.2 198 55.1
Nn7g38200 Nelumbo nucifera HOM05D006576 ORTHO05D008644 2.6e-28 131.3 72 83.3
Nn2g14734 Nelumbo nucifera HOM05D006576 ORTHO05D008644 4.4e-28 130.6 73 80.8
Atru.chr11.1906 Acer truncatum HOM05D006576 ORTHO05D008644 3.5e-25 120.9 77 67.5
MBI18_g06878_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 6.0e-25 120.2 70 71.4
MBI18_g09633_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 9.6e-23 112.8 71 63.4
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 2.1e-22 111.7 97 60.8
MBI13_g29621_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 8.1e-22 109.8 70 64.3
Zm00001eb326440 Zea mays HOM05D006576 ORTHO05D028753 1.3e-19 102.4 66 72.7
Zm00001eb361570 Zea mays HOM05D006576 ORTHO05D028753 1.3e-19 102.4 66 72.7
Zm00001eb377960 Zea mays HOM05D006576 ORTHO05D028753 1.3e-19 102.4 66 72.7
MD05G1053300 Malus domestica HOM05D006576 ORTHO05D248938 2.9e-19 101.3 64 67.2
CBR_g55378 Chara braunii HOM05D006576 ORTHO05D028753 1.5e-15 89.0 83 57.8
Zm00001eb171910 Zea mays HOM05D000538 ORTHO05D003297 7.4e-15 86.7 103 43.7
MBI18_g23781_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 1.5e-12 79.0 52 61.5
AL4G26800 Arabidopsis lyrata HOM05D006576 ORTHO05D008644 5.8e-12 77.0 99 45.5
Zm00001eb147180 Zea mays HOM05D014217 ORTHO05D000496 5.1e-08 63.9 69 43.5
Zm00001eb413530 Zea mays HOM05D014217 ORTHO05D000496 1.3e-06 59.3 64 42.2


User provided reference genes

Program Settings