Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0062211 Lupinus albus HOM05D000697 ORTHO05D010185 2.4e-15 84.7 55 100.0
Lalb_Chr23g0266511 Lupinus albus HOM05D000697 ORTHO05D010185 1.0e-10 69.3 40 85.0
Prupe.1G374500 Prunus persica HOM05D000697 ORTHO05D010185 1.3e-10 68.9 40 85.0
FAN15G1852 Fragaria x ananassa HOM05D000697 ORTHO05D000169 1.8e-10 68.6 39 87.2
CiPaw.07G157300 Carya illinoinensis HOM05D000697 ORTHO05D010185 3.9e-10 67.4 40 85.0
CiPaw.08G060300 Carya illinoinensis HOM05D000697 ORTHO05D010185 3.9e-10 67.4 40 85.0
FAN26G2173 Fragaria x ananassa HOM05D000697 ORTHO05D010185 3.9e-10 67.4 39 84.6
Glyma.14G071500 Glycine max HOM05D000697 ORTHO05D010185 3.9e-10 67.4 40 85.0
Glyma.17G253132 Glycine max HOM05D000697 ORTHO05D010185 3.9e-10 67.4 40 85.0
Lalb_Chr14g0369491 Lupinus albus HOM05D000697 ORTHO05D010185 3.9e-10 67.4 40 85.0
Manes.05G155332 Manihot esculenta HOM05D000697 ORTHO05D010185 3.9e-10 67.4 40 85.0
Manes.18G021001 Manihot esculenta HOM05D000697 ORTHO05D010185 3.9e-10 67.4 40 85.0
Phvul.001G011900 Phaseolus vulgaris HOM05D000697 ORTHO05D010185 3.9e-10 67.4 40 85.0
Gohir.A12G062300 Gossypium hirsutum HOM05D000697 ORTHO05D010185 5.1e-10 67.0 40 82.5
Thecc.01G028200 Theobroma cacao HOM05D000697 ORTHO05D010185 5.1e-10 67.0 40 82.5
Gohir.A06G007100 Gossypium hirsutum HOM05D000697 ORTHO05D010185 8.7e-10 66.2 40 82.5
Gohir.D05G194400 Gossypium hirsutum HOM05D000697 ORTHO05D010185 8.7e-10 66.2 40 82.5
Potri.002G032000 Populus trichocarpa HOM05D000697 ORTHO05D010185 8.7e-10 66.2 40 82.5
Prupe.7G160500 Prunus persica HOM05D000697 ORTHO05D010185 8.7e-10 66.2 40 80.0
Thecc.08G033000 Theobroma cacao HOM05D000697 ORTHO05D010185 8.7e-10 66.2 40 82.5
CiPaw.08G138600 Carya illinoinensis HOM05D000697 ORTHO05D010185 1.1e-09 65.9 40 80.0
Migut.C00767 Erythranthe guttata HOM05D000697 ORTHO05D010185 1.1e-09 65.9 40 80.0
FAN27G0060 Fragaria x ananassa HOM05D000697 ORTHO05D010185 1.1e-09 65.9 39 82.1
vmacro04298 Vaccinium macrocarpon HOM05D000697 ORTHO05D010185 1.1e-09 65.9 38 86.8
Carub.0002s2224 Capsella rubella HOM05D000697 ORTHO05D010185 1.5e-09 65.5 40 82.5
CARHR068750 Cardamine hirsuta HOM05D000697 ORTHO05D010185 1.5e-09 65.5 40 82.5
Migut.N00473 Erythranthe guttata HOM05D000697 ORTHO05D010185 1.5e-09 65.5 40 82.5
Manes.02G097800 Manihot esculenta HOM05D000697 ORTHO05D010185 1.9e-09 65.1 40 80.0
Gohir.D02G095800 Gossypium hirsutum HOM05D000697 ORTHO05D010185 2.5e-09 64.7 40 82.5
CiPaw.07G050800 Carya illinoinensis HOM05D000697 ORTHO05D010185 3.3e-09 64.3 40 77.5
Gohir.D01G102800 Gossypium hirsutum HOM05D000697 ORTHO05D010185 3.3e-09 64.3 40 80.0
arahy.Tifrunner.gnm1.ann1.T95EUW Arachis hypogaea HOM05D000697 ORTHO05D010185 4.3e-09 63.9 38 84.2
ClCG05G018700 Citrullus lanatus HOM05D000697 ORTHO05D010185 4.3e-09 63.9 39 82.1
Cc10_g02470 Coffea canephora HOM05D000697 ORTHO05D010185 4.3e-09 63.9 40 80.0
Potri.005G231250 Populus trichocarpa HOM05D000697 ORTHO05D010185 4.3e-09 63.9 40 77.5
FAN19G2851 Fragaria x ananassa HOM05D000697 ORTHO05D000169 5.7e-09 63.5 38 81.6
FAN26G2107 Fragaria x ananassa HOM05D000697 ORTHO05D000169 5.7e-09 63.5 38 81.6
FAN28G2503 Fragaria x ananassa HOM05D000697 ORTHO05D000169 5.7e-09 63.5 38 81.6
Gohir.D11G188600 Gossypium hirsutum HOM05D000697 ORTHO05D010185 5.7e-09 63.5 40 77.5
Dinv40025 Davidia involucrata HOM05D003765 ORTHO05D000169 7.4e-09 63.2 37 81.1
SGA_v2.0_scaffold11G05844 Striga asiatica HOM05D000697 ORTHO05D010185 7.4e-09 63.2 40 85.0
Glyma.05G157100 Glycine max HOM05D000697 ORTHO05D010185 9.7e-09 62.8 39 79.5
Glyma.08G115251 Glycine max HOM05D000697 ORTHO05D010185 9.7e-09 62.8 39 79.5
Phvul.002G237700 Phaseolus vulgaris HOM05D000697 ORTHO05D010185 9.7e-09 62.8 39 79.5
CAN.G358.36 Capsicum annuum HOM05D000697 ORTHO05D010185 1.3e-08 62.4 40 75.0
Gorai.007G200600 Gossypium raimondii HOM05D000697 ORTHO05D000169 2.2e-08 61.6 39 76.9
Gohir.A11G181800 Gossypium hirsutum HOM05D000697 ORTHO05D000169 3.7e-08 60.8 39 76.9
CAN.G568.4 Capsicum annuum HOM05D000697 ORTHO05D010185 4.8e-08 60.5 40 72.5
ClCG01G019930 Citrullus lanatus HOM05D000697 ORTHO05D010185 4.8e-08 60.5 39 79.5
Migut.H02516 Erythranthe guttata HOM05D000697 ORTHO05D010185 4.8e-08 60.5 40 75.0
Potri.007G020000 Populus trichocarpa HOM05D000697 ORTHO05D010185 4.8e-08 60.5 40 75.0
MBI10_g00750_MAGBIO Magnolia biondii HOM05D000697 ORTHO05D000169 8.2e-08 59.7 38 76.3
Eucgr.I02397 Eucalyptus grandis HOM05D000697 ORTHO05D010185 1.1e-07 59.3 39 74.4
CAN.G1373.26 Capsicum annuum HOM05D000697 ORTHO05D010185 1.4e-07 58.9 40 72.5
CAN.G1544.1 Capsicum annuum HOM05D000697 ORTHO05D010185 1.4e-07 58.9 38 71.1
Aa31LG8G15820 Aethionema arabicum HOM05D000697 ORTHO05D010185 2.4e-07 58.2 38 73.7
Manes.04G074110 Manihot esculenta HOM05D000697 ORTHO05D010185 4.1e-07 57.4 38 71.1
MD08G1025800 Malus domestica HOM05D000697 ORTHO05D000169 5.3e-07 57.0 35 82.9
MD15G1022500 Malus domestica HOM05D000697 ORTHO05D000169 5.3e-07 57.0 35 82.9
Sed0018930 Sechium edule HOM05D000697 ORTHO05D000169 5.3e-07 57.0 36 77.8
Manes.11G084900 Manihot esculenta HOM05D000697 ORTHO05D010185 6.9e-07 56.6 38 68.4
BolC3t18161H Brassica oleracea HOM05D000697 ORTHO05D010185 9.0e-07 56.2 38 71.1
BraA06t26266Z Brassica rapa HOM05D000697 ORTHO05D010185 9.0e-07 56.2 38 71.1
Carub.0003s3231 Capsella rubella HOM05D000697 ORTHO05D010185 9.0e-07 56.2 38 71.1
HanXRQChr09g0269581 Helianthus annuus HOM05D000697 ORTHO05D000169 9.0e-07 56.2 35 85.7
Phvul.009G060950 Phaseolus vulgaris HOM05D000697 ORTHO05D010185 9.0e-07 56.2 42 71.4
Potri.005G119400 Populus trichocarpa HOM05D000697 ORTHO05D010185 9.0e-07 56.2 41 73.2
Gorai.005G109600 Gossypium raimondii HOM05D000697 ORTHO05D000169 1.5e-06 55.5 35 82.9
Carub.0007s0570 Capsella rubella HOM05D000697 ORTHO05D010185 2.0e-06 55.1 35 68.6
Gohir.D12G062100 Gossypium hirsutum HOM05D000697 ORTHO05D000169 2.0e-06 55.1 35 80.0
Gorai.008G065300 Gossypium raimondii HOM05D000697 ORTHO05D000169 2.0e-06 55.1 35 80.0
Potri.009G119650 Populus trichocarpa HOM05D000697 ORTHO05D010185 2.6e-06 54.7 38 68.4
Thecc.02G081000 Theobroma cacao HOM05D000697 ORTHO05D010185 2.6e-06 54.7 38 68.4
Gohir.A05G190900 Gossypium hirsutum HOM05D000697 ORTHO05D000169 3.4e-06 54.3 35 80.0
Gohir.D06G003300 Gossypium hirsutum HOM05D000697 ORTHO05D000169 3.4e-06 54.3 35 80.0
Gorai.009G199300 Gossypium raimondii HOM05D000697 ORTHO05D000169 3.4e-06 54.3 35 80.0
Gorai.010G008000 Gossypium raimondii HOM05D000697 ORTHO05D000169 3.4e-06 54.3 35 80.0
Lj4g0025152 Lotus japonicus HOM05D000697 ORTHO05D000169 4.5e-06 53.9 37 70.3
Migut.B00215 Erythranthe guttata HOM05D000697 ORTHO05D010185 5.9e-06 53.5 35 62.9
Potri.004G158150 Populus trichocarpa HOM05D000697 ORTHO05D010185 5.9e-06 53.5 38 65.8
BolC9t54271H Brassica oleracea HOM05D000697 ORTHO05D010185 7.7e-06 53.1 38 68.4
BraA07t28050Z Brassica rapa HOM05D000697 ORTHO05D010185 7.7e-06 53.1 38 68.4
BraA09t36820Z Brassica rapa HOM05D000697 ORTHO05D010185 7.7e-06 53.1 38 68.4
Glyma.04G010400 Glycine max HOM05D000697 ORTHO05D010185 1.0e-05 52.8 38 65.8


User provided reference genes

Program Settings