Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0061301 Lupinus albus HOM05D005368 ORTHO05D006417 2.3e-69 265.4 129 100.0
Lalb_Chr08g0246711 Lupinus albus HOM05D005368 ORTHO05D006417 3.3e-60 235.0 116 94.8
Medtr3g117550 Medicago truncatula HOM05D005368 ORTHO05D006417 5.9e-57 224.2 118 88.1
Glyma.04G008100 Glycine max HOM05D005368 ORTHO05D006417 8.5e-56 220.3 116 88.8
Glyma.06G007900 Glycine max HOM05D005368 ORTHO05D006417 2.5e-55 218.8 116 87.9
VMungo1309G2922 Vigna mungo HOM05D005368 ORTHO05D006417 5.5e-55 217.6 116 87.9
CiPaw.05G073300 Carya illinoinensis HOM05D005368 ORTHO05D006417 7.2e-55 217.2 118 85.6
Ca_15334_v3 Cicer arietinum L. HOM05D005368 ORTHO05D006417 7.2e-55 217.2 114 87.7
CiPaw.06G128000 Carya illinoinensis HOM05D005368 ORTHO05D006417 2.7e-54 215.3 118 84.7
Sed0023703 Sechium edule HOM05D005368 ORTHO05D006417 6.1e-54 214.2 116 85.3
Psat5g003920 Pisum sativum HOM05D005368 ORTHO05D006417 1.0e-53 213.4 118 85.6
CANSAT11G1177 Cannabis sativa HOM05D005368 ORTHO05D006417 1.4e-53 213.0 117 86.3
Cfa005111 Carpinus fangiana HOM05D005368 ORTHO05D006417 2.3e-53 212.2 118 83.9
Thecc.02G075100 Theobroma cacao HOM05D005368 ORTHO05D006417 2.3e-53 212.2 118 83.9
Sed0006755 Sechium edule HOM05D005368 ORTHO05D006417 3.9e-53 211.5 116 84.5
Phvul.009G002900 Phaseolus vulgaris HOM05D005368 ORTHO05D006417 6.7e-53 210.7 116 86.2
Haze_02245 Corylus avellana HOM05D005368 ORTHO05D006417 8.8e-53 210.3 118 83.1
FAN20G0372 Fragaria x ananassa HOM05D005368 ORTHO05D006417 8.8e-53 210.3 118 83.1
Manes.11G081900 Manihot esculenta HOM05D005368 ORTHO05D006417 1.5e-52 209.5 121 81.0
Duzib052G0771 Durio zibethinus HOM05D005368 ORTHO05D006417 2.0e-52 209.1 118 82.2
Hma1.2p1_0032F.1_g020120 Hydrangea macrophylla HOM05D005368 ORTHO05D006417 2.6e-52 208.8 116 83.6
Haze_02248 Corylus avellana HOM05D005368 ORTHO05D006417 3.3e-52 208.4 117 82.9
Lj3g0011506 Lotus japonicus HOM05D005368 ORTHO05D006417 4.4e-52 208.0 114 86.8
MBI18_g13600_MAGBIO Magnolia biondii HOM05D005368 ORTHO05D006417 4.4e-52 208.0 118 84.7
GSVIVG01024171001 Vitis vinifera HOM05D005368 ORTHO05D006417 4.4e-52 208.0 116 81.0
ECA246G1492 Erigeron canadensis HOM05D005368 ORTHO05D006417 5.7e-52 207.6 115 82.6
Gohir.D02G220600 Gossypium hirsutum HOM05D005368 ORTHO05D006417 5.7e-52 207.6 118 82.2
Nn5g29240 Nelumbo nucifera HOM05D005368 ORTHO05D006417 5.7e-52 207.6 113 83.2
PGR042G2956 Punica granatum HOM05D005368 ORTHO05D006417 5.7e-52 207.6 114 82.5
FvH4_2g10430 Fragaria vesca HOM05D005368 ORTHO05D006417 7.4e-52 207.2 116 82.8
FAN24G2358 Fragaria x ananassa HOM05D005368 ORTHO05D006417 7.4e-52 207.2 116 82.8
Manes.04G083400 Manihot esculenta HOM05D005368 ORTHO05D006417 7.4e-52 207.2 114 82.5
FAN27G2088 Fragaria x ananassa HOM05D005368 ORTHO05D006417 9.7e-52 206.8 116 81.9
Gohir.A12G041100 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.3e-51 206.5 118 80.5
Gorai.005G248500 Gossypium raimondii HOM05D005368 ORTHO05D006417 1.3e-51 206.5 118 81.4
MD00G1086200 Malus domestica HOM05D005368 ORTHO05D006417 1.7e-51 206.1 118 81.4
RcHm_v2.0_Chr6g0267931 Rosa chinensis HOM05D005368 ORTHO05D006417 1.7e-51 206.1 116 82.8
Duzib132G1204 Durio zibethinus HOM05D005368 ORTHO05D006417 2.2e-51 205.7 118 80.5
Potri.009G124600 Populus trichocarpa HOM05D005368 ORTHO05D006417 2.2e-51 205.7 114 83.3
Prupe.8G083900 Prunus persica HOM05D005368 ORTHO05D006417 2.8e-51 205.3 118 81.4
FAN15G3179 Fragaria x ananassa HOM05D005368 ORTHO05D006417 3.7e-51 204.9 116 81.9
Gohir.A03G199300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 3.7e-51 204.9 118 80.5
Gohir.D12G031300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 3.7e-51 204.9 118 79.7
Gorai.008G032000 Gossypium raimondii HOM05D005368 ORTHO05D006417 3.7e-51 204.9 118 79.7
CAN.G170.100 Capsicum annuum HOM05D005368 ORTHO05D006417 4.8e-51 204.5 115 80.9
ClCG11G003860 Citrullus lanatus HOM05D005368 ORTHO05D006417 4.8e-51 204.5 117 82.1
Potri.004G163000 Populus trichocarpa HOM05D005368 ORTHO05D006417 4.8e-51 204.5 118 80.5
Nitab4.5_0001317g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 6.3e-51 204.1 115 81.7
Aqoxy5G01478 Aquilegia oxysepala HOM05D005368 ORTHO05D006417 8.2e-51 203.8 113 84.1
Cc02_g16910 Coffea canephora HOM05D005368 ORTHO05D006417 8.2e-51 203.8 118 80.5
CsaV3_2G015290 Cucumis sativus L. HOM05D005368 ORTHO05D006417 8.2e-51 203.8 116 81.0
Nitab4.5_0005266g0100 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.1e-50 203.4 115 80.9
Solyc01g110390.2 Solanum lycopersicum HOM05D005368 ORTHO05D006417 1.1e-50 203.4 115 80.9
TWI31G1415 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 1.4e-50 203.0 115 82.6
CDE02G1335 Ceratophyllum demersum HOM05D000240 ORTHO05D001140 3.1e-50 201.8 120 79.2
TWI79G1074 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 3.1e-50 201.8 115 80.0
TWI75G0748 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 5.3e-50 201.1 115 82.6
TAR376G0297 Trochodendron aralioides HOM05D005368 ORTHO05D006417 7.0e-50 200.7 113 82.3
BcaNung07080 Brassica carinata HOM05D005368 ORTHO05D006417 1.2e-49 199.9 116 80.2
A03p63090 Brassica napus HOM05D005368 ORTHO05D006417 1.2e-49 199.9 116 80.2
BolC7t46501H Brassica oleracea HOM05D005368 ORTHO05D006417 1.2e-49 199.9 116 80.2
BraA03t15384Z Brassica rapa HOM05D005368 ORTHO05D006417 1.2e-49 199.9 116 80.2
COL.COLO4_26045 Corchorus olitorius HOM05D005368 ORTHO05D006417 1.2e-49 199.9 114 79.8
HanXRQChr15g0478311 Helianthus annuus HOM05D005368 ORTHO05D006417 1.2e-49 199.9 114 78.9
Aa31LG2G15810 Aethionema arabicum HOM05D005368 ORTHO05D006417 2.0e-49 199.1 116 79.3
AL7G16500 Arabidopsis lyrata HOM05D005368 ORTHO05D006417 2.6e-49 198.7 116 80.2
AT4G34700 Arabidopsis thaliana HOM05D005368 ORTHO05D006417 3.5e-49 198.4 116 80.2
C07p60710 Brassica napus HOM05D005368 ORTHO05D006417 3.5e-49 198.4 116 79.3
CSS0032904 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 3.5e-49 198.4 112 81.2
CSS0039837 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 3.5e-49 198.4 112 81.2
Atru.chr5.3143 Acer truncatum HOM05D005368 ORTHO05D006417 4.5e-49 198.0 117 79.5
BcaB03g11818 Brassica carinata HOM05D005368 ORTHO05D006417 4.5e-49 198.0 116 79.3
BcaNung00672 Brassica carinata HOM05D005368 ORTHO05D006417 4.5e-49 198.0 116 79.3
BcaNung00675 Brassica carinata HOM05D005368 ORTHO05D006417 4.5e-49 198.0 116 79.3
A01p03810 Brassica napus HOM05D005368 ORTHO05D006417 4.5e-49 198.0 116 79.3
A08p16660 Brassica napus HOM05D005368 ORTHO05D006417 4.5e-49 198.0 116 79.3
C01p04120 Brassica napus HOM05D005368 ORTHO05D006417 4.5e-49 198.0 116 79.3
BraA01t00366Z Brassica rapa HOM05D005368 ORTHO05D006417 4.5e-49 198.0 116 79.3
Ciclev10029601m.g Citrus clementina HOM05D005368 ORTHO05D006417 4.5e-49 198.0 114 80.7
Peaxi162Scf00016g00038 Petunia axillaris HOM05D005368 ORTHO05D006417 4.5e-49 198.0 115 78.3
Migut.N01277 Erythranthe guttata HOM05D005368 ORTHO05D006417 5.9e-49 197.6 113 80.5
THA.LOC104819629 Tarenaya hassleriana HOM05D005368 ORTHO05D006417 5.9e-49 197.6 116 79.3
Carub.0007s0559 Capsella rubella HOM05D005368 ORTHO05D006417 7.7e-49 197.2 116 78.4
CARHR243000 Cardamine hirsuta HOM05D005368 ORTHO05D006417 1.0e-48 196.8 116 79.3
Sp7g32480 Schrenkiella parvula HOM05D005368 ORTHO05D006417 1.0e-48 196.8 116 78.4
PSO210G0115 Papaver somniferum HOM05D005368 ORTHO05D006417 3.8e-48 194.9 113 81.4
PSO170G4570 Papaver somniferum HOM05D005368 ORTHO05D006417 5.0e-48 194.5 113 80.5
MSTRG.27675 Avicennia marina HOM05D005368 ORTHO05D006417 8.5e-48 193.7 114 77.2
QL11p046417 Quercus lobata HOM05D005368 ORTHO05D006417 8.5e-48 193.7 137 70.1
Gorai.002G149100 Gossypium raimondii HOM05D005368 ORTHO05D006417 1.5e-47 193.0 120 76.7
BcaC01g00883 Brassica carinata HOM05D005368 ORTHO05D006417 1.9e-47 192.6 112 79.5
MSTRG.20040 Avicennia marina HOM05D005368 ORTHO05D006417 2.5e-47 192.2 114 77.2
SGA_v2.0_scaffold207G41877 Striga asiatica HOM05D005368 ORTHO05D006417 3.2e-47 191.8 115 77.4
C03p85580 Brassica napus HOM05D005368 ORTHO05D006417 4.2e-47 191.4 116 76.7
HPP92_012929 Vanilla planifolia HOM05D005368 ORTHO05D006417 5.5e-47 191.0 114 78.1
MELO3C023357.2 Cucumis melo HOM05D005368 ORTHO05D006417 7.2e-47 190.7 117 76.9
TPR.G32174 Trifolium pratense HOM05D005368 ORTHO05D006417 7.2e-47 190.7 182 56.0
MD10G1063100 Malus domestica HOM05D005368 ORTHO05D006417 9.4e-47 190.3 117 76.1
Hund00179 Selenicereus undatus HOM05D005368 ORTHO05D006417 1.2e-46 189.9 115 76.5
Hund00187 Selenicereus undatus HOM05D005368 ORTHO05D006417 1.2e-46 189.9 115 76.5
Hund06283 Selenicereus undatus HOM05D005368 ORTHO05D006417 8.0e-46 187.2 115 73.0
Nitab4.5_0010630g0030 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.0e-45 186.8 104 84.6
MD00G1117500 Malus domestica HOM05D005368 ORTHO05D006417 1.2e-44 183.3 118 74.6
Os06g0714100 Oryza sativa ssp. japonica HOM05D005368 ORTHO05D006417 2.0e-44 182.6 113 71.7
Lsat_1_v5_gn_3_44180 Lactuca sativa HOM05D005368 ORTHO05D006417 7.5e-44 180.6 102 79.4
BraA08t33631Z Brassica rapa HOM05D005368 ORTHO05D006417 9.7e-44 180.3 151 60.9
ATR0149G005 Amborella trichopoda HOM05D005368 ORTHO05D006417 1.3e-43 179.9 116 73.3
BolC1t00400H Brassica oleracea HOM05D005368 ORTHO05D006417 3.7e-43 178.3 105 79.0
Ah.01g006460 Amaranthus hybridus HOM05D005368 ORTHO05D006417 1.1e-42 176.8 117 69.2
AUR62010388 Chenopodium quinoa HOM05D005368 ORTHO05D006417 1.6e-41 172.9 117 70.1
AUR62016830 Chenopodium quinoa HOM05D005368 ORTHO05D006417 2.7e-41 172.2 117 70.1
Dinv23453 Davidia involucrata HOM05D005368 ORTHO05D006417 7.7e-41 170.6 96 83.3
Gohir.D13G096825 Gossypium hirsutum HOM05D005368 ORTHO05D006417 7.7e-41 170.6 105 74.3
Ah.01g018810 Amaranthus hybridus HOM05D005368 ORTHO05D006417 1.0e-40 170.2 106 74.5
Zm00001eb227940 Zea mays HOM05D005368 ORTHO05D006417 3.8e-40 168.3 103 72.8
EL10Ac9g21636 Beta vulgaris HOM05D005368 ORTHO05D006417 6.5e-40 167.5 104 75.0
Sc08g0000900 Simmondsia chinensis HOM05D005368 ORTHO05D006417 6.5e-40 167.5 105 70.5
Oeu046129.2 Olea europaea HOM05D005368 ORTHO05D006417 1.1e-39 166.8 126 63.5
SalBow3G2013 Salvia bowleyana HOM05D005368 ORTHO05D006417 1.1e-39 166.8 105 74.3
CDE04G1205 Ceratophyllum demersum HOM05D005368 ORTHO05D006417 8.8e-37 157.1 94 79.8
Nitab4.5_0005932g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 2.0e-36 156.0 115 67.0
Actinidia02246 Actinidia chinensis HOM05D005368 ORTHO05D006417 7.5e-36 154.1 119 66.4
SEGI_21378 Sequoiadendron giganteum HOM05D005368 ORTHO05D006417 1.2e-33 146.7 114 61.4
Mapoly0002s0197 Marchantia polymorpha HOM05D005368 ORTHO05D006417 5.9e-33 144.4 111 60.4
Pp3c6_19130 Physcomitrium patens HOM05D005368 ORTHO05D006417 7.7e-33 144.1 112 56.2
PGSC0003DMG400005571 Solanum tuberosum HOM05D005368 ORTHO05D006417 1.7e-32 142.9 85 80.0
Thhalv10026594m.g Eutrema salsugineum HOM05D005368 ORTHO05D006417 1.6e-30 136.3 116 59.5
AagrBONN_evm.TU.Sc2ySwM_368.1500 Anthoceros agrestis HOM05D005368 ORTHO05D006417 2.6e-28 129.0 114 50.0
Eucgr.G01730 Eucalyptus grandis HOM05D005368 ORTHO05D006417 2.8e-27 125.6 60 90.0
CBR_g22898 Chara braunii HOM05D000019 ORTHO05D000048 3.7e-27 125.2 121 50.4
Sopen01g052540 Solanum pennellii HOM05D005368 ORTHO05D006417 4.1e-26 121.7 57 89.5
HanXRQChr10g0292781 Helianthus annuus HOM05D005368 ORTHO05D006417 3.8e-24 115.2 58 82.8
Gohir.A13G090800 Gossypium hirsutum HOM05D005368 ORTHO05D006417 5.6e-23 111.3 85 65.9
SMO159G0001 Selaginella moellendorffii HOM05D005368 ORTHO05D006417 1.2e-22 110.2 99 53.5
CSS0005721 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 1.6e-22 109.8 60 80.0
SMO223G0026 Selaginella moellendorffii HOM05D000032 ORTHO05D004142 6.1e-22 107.8 105 49.5
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 1.8e-21 106.3 60 75.0
unitig_60.g25866 Utricularia gibba HOM05D005368 ORTHO05D006417 1.4e-18 96.7 113 46.9
Oeu020711.1 Olea europaea HOM05D005368 ORTHO05D006417 3.2e-18 95.5 58 67.2
MCO15G169 Micromonas commoda HOM05D005368 ORTHO05D006417 5.4e-18 94.7 96 49.0
BolC3t20846H Brassica oleracea HOM05D005368 ORTHO05D006417 2.0e-17 92.8 83 59.0
Migut.B00174 Erythranthe guttata HOM05D005368 ORTHO05D006417 3.9e-16 88.6 58 79.3
HanXRQChr17g0544121 Helianthus annuus HOM05D005368 ORTHO05D006417 8.6e-16 87.4 56 75.0
BcaNung04613 Brassica carinata HOM05D005368 ORTHO05D006417 9.5e-15 84.0 55 69.1
BcaNung02377 Brassica carinata HOM05D005368 ORTHO05D006417 2.0e-12 76.3 46 71.7
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 2.9e-11 72.4 58 65.5
VMungo0540G1094 Vigna mungo HOM05D003030 ORTHO05D006417 6.0e-09 64.7 84 47.6
Cre11.g467668 Chlamydomonas reinhardtii HOM05D005368 ORTHO05D006417 2.3e-08 62.8 87 36.8


User provided reference genes

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