Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 1.8e-128 462.6 237 100.0
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 1.2e-52 210.7 256 55.5
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 1.5e-45 187.2 249 53.0
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 3.3e-45 186.0 313 47.0
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 1.5e-42 177.2 282 48.9
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 9.8e-42 174.5 262 49.6
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 1.7e-41 173.7 255 48.6
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 7.0e-40 168.3 261 49.0
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 3.0e-38 162.9 248 47.6
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 1.1e-37 161.0 306 43.5
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 1.1e-35 154.5 179 55.9
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 3.1e-35 152.9 253 45.5
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 5.2e-35 152.1 253 45.5
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 1.6e-31 140.6 307 37.5
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 2.5e-29 133.3 257 40.9
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 2.1e-28 130.2 253 42.3
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 4.7e-28 129.0 237 43.0
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 4.7e-28 129.0 278 37.1
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 6.8e-27 125.2 302 38.7
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 6.8e-27 125.2 238 41.6
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 6.8e-27 125.2 302 38.7
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 8.9e-27 124.8 253 41.9
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.5e-26 124.0 238 42.0
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 3.4e-26 122.9 239 41.0
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 7.6e-26 121.7 225 41.8
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 2.9e-25 119.8 293 36.5
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 3.7e-25 119.4 226 39.8
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 3.7e-25 119.4 250 40.4
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 6.4e-25 118.6 249 36.5
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 8.3e-25 118.2 238 40.3
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.1e-24 117.9 227 41.4
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 1.1e-24 117.9 214 41.1
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 1.9e-24 117.1 225 40.4
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 3.2e-24 116.3 235 38.7
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 5.4e-24 115.5 230 40.4
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 7.1e-24 115.2 281 37.0
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 9.2e-24 114.8 233 37.8
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 2.7e-23 113.2 240 39.6
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 6.0e-23 112.1 104 59.6
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 7.8e-23 111.7 127 52.8
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 1.0e-22 111.3 240 37.1
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.3e-22 110.2 127 52.8
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 2.3e-22 110.2 255 38.4
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 2.3e-22 110.2 289 34.6
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 3.0e-22 109.8 127 52.0
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 3.0e-22 109.8 127 52.0
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 3.0e-22 109.8 127 52.0
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 8.6e-22 108.2 231 39.0
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 1.1e-21 107.8 283 34.3
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 2.5e-21 106.7 238 37.8
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 3.3e-21 106.3 209 40.7
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 4.3e-21 105.9 199 39.7
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 4.3e-21 105.9 217 39.6
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 5.6e-21 105.5 109 59.6
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 7.3e-21 105.1 212 39.2
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 9.6e-21 104.8 207 41.1
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 1.2e-20 104.4 237 37.1
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 1.6e-20 104.0 237 37.1
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 1.6e-20 104.0 248 35.9
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 1.6e-20 104.0 199 39.7
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 2.8e-20 103.2 214 37.9
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 3.6e-20 102.8 239 36.4
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 4.7e-20 102.4 214 37.4
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 8.1e-20 101.7 239 36.4
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 8.1e-20 101.7 238 35.3
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 1.1e-19 101.3 230 37.8
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 1.4e-19 100.9 246 34.6
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 4.0e-19 99.4 298 33.2
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 4.0e-19 99.4 232 39.2
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 4.0e-19 99.4 221 36.2
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 5.2e-19 99.0 226 37.2
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 6.8e-19 98.6 177 39.0
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 1.2e-18 97.8 238 34.0
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 1.2e-18 97.8 224 39.3
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 2.6e-18 96.7 231 37.7
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 4.4e-18 95.9 222 39.6
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 5.8e-18 95.5 182 40.1
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 1.3e-17 94.4 123 48.0
Carub.0007s0022 Capsella rubella HOM05D003937 ORTHO05D004583 2.9e-17 93.2 199 38.7
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 3.8e-17 92.8 258 34.1
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 8.4e-17 91.7 199 37.7
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 1.1e-16 91.3 302 31.1
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 1.1e-16 91.3 248 34.7
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 1.4e-16 90.9 187 39.0
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 4.2e-16 89.4 223 35.9
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 9.3e-16 88.2 201 37.8
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 9.3e-16 88.2 216 35.2
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 2.1e-15 87.0 175 39.4
ECA246G4591 Erigeron canadensis HOM05D003937 ORTHO05D004583 2.1e-15 87.0 197 36.5
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 2.1e-15 87.0 221 35.7
Cc09_g10730 Coffea canephora HOM05D003937 ORTHO05D004583 6.0e-15 85.5 103 52.4
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 7.8e-15 85.1 181 39.2
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 1.7e-14 84.0 193 36.8
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 3.0e-14 83.2 83 56.6
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 3.9e-14 82.8 191 36.6
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 1.1e-13 81.3 217 33.2
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 1.1e-13 81.3 80 53.8
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 2.5e-13 80.1 76 59.2
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 5.6e-13 79.0 194 34.0
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 5.6e-13 79.0 206 35.4
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 9.6e-13 78.2 218 35.8
Lsat_1_v5_gn_3_48780 Lactuca sativa HOM05D003937 ORTHO05D004583 4.8e-12 75.9 159 38.4
BraA08t34322Z Brassica rapa HOM05D003937 ORTHO05D004583 1.1e-11 74.7 130 43.1
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 1.8e-11 73.9 70 55.7
BcaB03g12256 Brassica carinata HOM05D003937 ORTHO05D004583 2.4e-11 73.6 71 62.0
BolC3t20032H Brassica oleracea HOM05D003937 ORTHO05D004583 4.0e-11 72.8 78 56.4
C03p77740 Brassica napus HOM05D003937 ORTHO05D004583 5.3e-11 72.4 78 56.4
arahy.Tifrunner.gnm1.ann1.2P21EX Arachis hypogaea HOM05D003937 ORTHO05D004583 9.0e-11 71.6 225 34.7
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 2.6e-10 70.1 66 56.1
A08p23700 Brassica napus HOM05D003937 ORTHO05D004583 3.4e-10 69.7 78 55.1
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 4.4e-10 69.3 85 49.4
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 5.8e-10 68.9 143 37.1
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 7.6e-10 68.6 160 34.4
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 9.9e-10 68.2 140 34.3
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 1.3e-09 67.8 76 51.3
Zm00001eb420050 Zea mays HOM05D003937 ORTHO05D004583 1.3e-09 67.8 171 31.0
CDE05G2511 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 2.9e-09 66.6 163 35.0
ECA233G2935 Erigeron canadensis HOM05D003937 ORTHO05D004583 2.9e-09 66.6 74 51.4
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 2.9e-09 66.6 76 48.7
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 2.9e-09 66.6 68 51.5
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 3.8e-09 66.2 66 53.0
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 8.4e-09 65.1 68 51.5
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 8.4e-09 65.1 223 29.6
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 1.1e-08 64.7 66 53.0
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 1.1e-08 64.7 173 34.1
CDE06G0218 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 1.4e-08 64.3 70 51.4
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 1.4e-08 64.3 67 50.7
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 1.4e-08 64.3 66 53.0
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 1.4e-08 64.3 66 53.0
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 1.9e-08 63.9 196 31.6
CARHR294070 Cardamine hirsuta HOM05D003937 ORTHO05D004583 2.4e-08 63.5 55 61.8
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 2.4e-08 63.5 226 30.1
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 3.2e-08 63.2 106 41.5
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 4.2e-08 62.8 127 37.0
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 4.2e-08 62.8 80 45.0
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 7.1e-08 62.0 115 36.5
HPP92_020992 Vanilla planifolia HOM05D003937 ORTHO05D004583 7.1e-08 62.0 165 35.8
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 9.3e-08 61.6 66 53.0
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 9.3e-08 61.6 176 30.1
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 1.6e-07 60.8 77 48.1
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 1.6e-07 60.8 68 52.9
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 2.7e-07 60.1 216 28.7
HPP92_025977 Vanilla planifolia HOM05D003937 ORTHO05D004583 2.7e-07 60.1 151 34.4
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 3.5e-07 59.7 196 32.7
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 3.5e-07 59.7 99 40.4
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 6.0e-07 58.9 55 56.4
Aqoxy6G01688 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 1.7e-06 57.4 220 29.1
CDE06G2177 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 2.3e-06 57.0 67 49.3
FAN04G2017 Fragaria x ananassa HOM05D003937 ORTHO05D004583 8.7e-06 55.1 128 35.2
Oeu033835.1 Olea europaea HOM05D003937 ORTHO05D004583 8.7e-06 55.1 51 58.8
SEGI_28645 Sequoiadendron giganteum HOM05D003937 ORTHO05D004583 8.7e-06 55.1 74 43.2


User provided reference genes

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