Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr09g0334661 Lupinus albus HOM05D010587 ORTHO05D000630 6.4e-180 634.0 337 100.0
PGSC0003DMG400022147 Solanum tuberosum HOM05D008543 ORTHO05D000630 8.8e-20 102.1 303 28.7
Cc05_g15710 Coffea canephora HOM05D000174 ORTHO05D000630 1.7e-18 97.8 257 32.7
Dinv40916 Davidia involucrata HOM05D008543 ORTHO05D000630 5.3e-17 92.8 383 29.5
Oeu006263.1 Olea europaea HOM05D008543 ORTHO05D000630 9.1e-17 92.0 379 27.2
MD11G1046000 Malus domestica HOM05D000174 ORTHO05D000630 2.9e-15 87.0 308 29.9
MD03G1043000 Malus domestica HOM05D000174 ORTHO05D000630 5.0e-15 86.3 343 26.8
Glyma.16G102000 Glycine max HOM05D008543 ORTHO05D000630 8.5e-15 85.5 370 29.5
Nitab4.5_0009408g0010 Nicotiana tabacum HOM05D008543 ORTHO05D000630 8.5e-15 85.5 318 27.4
Phvul.003G273600 Phaseolus vulgaris HOM05D008543 ORTHO05D000630 2.5e-14 84.0 357 28.9
Oeu052885.1 Olea europaea HOM05D008543 ORTHO05D000630 3.2e-14 83.6 345 28.7
Prupe.6G035400 Prunus persica HOM05D000174 ORTHO05D000630 3.2e-14 83.6 221 33.9
QL01p020579 Quercus lobata HOM05D008543 ORTHO05D000630 4.2e-14 83.2 334 29.6
RcHm_v2.0_Chr5g0074621 Rosa chinensis HOM05D000174 ORTHO05D000630 1.2e-13 81.6 315 28.6
GSVIVG01014844001 Vitis vinifera HOM05D000174 ORTHO05D000630 2.1e-13 80.9 344 26.7
Lalb_Chr15g0080221 Lupinus albus HOM05D008543 ORTHO05D000630 2.7e-13 80.5 340 32.1
Sc16g0010820 Simmondsia chinensis HOM05D008543 ORTHO05D000630 3.6e-13 80.1 282 29.8
TAR636G0894 Trochodendron aralioides HOM05D008543 ORTHO05D000630 3.6e-13 80.1 322 27.0
CSS0016853 Camellia sinensis var. sinensis HOM05D000174 ORTHO05D000630 4.7e-13 79.7 141 37.6
CSS0041839 Camellia sinensis var. sinensis HOM05D008543 ORTHO05D000630 4.7e-13 79.7 141 37.6
QL08p000516 Quercus lobata HOM05D000174 ORTHO05D000630 4.7e-13 79.7 317 24.9
FAN25G3117 Fragaria x ananassa HOM05D000174 ORTHO05D000630 1.0e-12 78.6 275 29.1
FvH4_3g41600 Fragaria vesca HOM05D000174 ORTHO05D000630 1.4e-12 78.2 278 29.9
FAN11G0349 Fragaria x ananassa HOM05D000174 ORTHO05D000630 1.4e-12 78.2 278 29.9
Eucgr.F03645 Eucalyptus grandis HOM05D008543 ORTHO05D000630 1.8e-12 77.8 316 27.5
Atru.chr2.3896 Acer truncatum HOM05D000174 ORTHO05D000630 2.3e-12 77.4 256 30.1
CiPaw.11G210700 Carya illinoinensis HOM05D000174 ORTHO05D000630 2.3e-12 77.4 339 26.0
Nitab4.5_0000152g0060 Nicotiana tabacum HOM05D008543 ORTHO05D000630 2.3e-12 77.4 340 27.4
Nn1g07631 Nelumbo nucifera HOM05D000174 ORTHO05D000630 6.8e-12 75.9 262 30.5
Actinidia30352 Actinidia chinensis HOM05D008543 ORTHO05D000630 8.8e-12 75.5 299 29.8
CAN.G623.74 Capsicum annuum HOM05D008543 ORTHO05D000630 8.8e-12 75.5 228 28.5
FAN21G0599 Fragaria x ananassa HOM05D000174 ORTHO05D000630 8.8e-12 75.5 273 28.9
ECA240G0792 Erigeron canadensis HOM05D000174 ORTHO05D000630 2.0e-11 74.3 267 34.1
Actinidia03675 Actinidia chinensis HOM05D000174 ORTHO05D000630 2.6e-11 73.9 393 25.4
VMungo0251G2315 Vigna mungo HOM05D008543 ORTHO05D000630 2.6e-11 73.9 366 29.0
FAN16G0761 Fragaria x ananassa HOM05D000174 ORTHO05D000630 3.4e-11 73.6 282 27.3
Peaxi162Scf00234g00042 Petunia axillaris HOM05D000174 ORTHO05D000630 4.4e-11 73.2 314 25.5
Aqoxy4G02266 Aquilegia oxysepala HOM05D000174 ORTHO05D000630 7.5e-11 72.4 242 35.1
CSS0027724 Camellia sinensis var. sinensis HOM05D008543 ORTHO05D000630 9.8e-11 72.0 142 36.6
Rhsim06G0235100 Rhododendron simsii HOM05D000174 ORTHO05D000630 9.8e-11 72.0 241 29.9
Ciclev10007805m.g Citrus clementina HOM05D000174 ORTHO05D000630 1.3e-10 71.6 211 36.0
arahy.Tifrunner.gnm1.ann1.1FA9DV Arachis hypogaea HOM05D008543 ORTHO05D000630 1.7e-10 71.2 303 29.4
Peaxi162Scf00232g00062 Petunia axillaris HOM05D008543 ORTHO05D000630 2.2e-10 70.9 291 27.1
Sopen11g029860 Solanum pennellii HOM05D000174 ORTHO05D000630 4.8e-10 69.7 277 26.4
Nn1g07630 Nelumbo nucifera HOM05D000174 ORTHO05D000630 6.3e-10 69.3 216 32.4
CiPaw.12G142600 Carya illinoinensis HOM05D000174 ORTHO05D000630 8.3e-10 68.9 328 25.9
MBI15_g44395_MAGBIO Magnolia biondii HOM05D000174 ORTHO05D000630 8.3e-10 68.9 273 29.3
Sopen07g034340 Solanum pennellii HOM05D011325 ORTHO05D000630 8.3e-10 68.9 354 25.4
TAR627G0908 Trochodendron aralioides HOM05D000174 ORTHO05D000630 8.3e-10 68.9 291 25.8
Cpa.g.sc12.67 Carica papaya HOM05D000174 ORTHO05D000630 1.4e-09 68.2 260 25.8
Actinidia10593 Actinidia chinensis HOM05D000174 ORTHO05D000630 2.4e-09 67.4 301 27.2
SEGI_09770 Sequoiadendron giganteum HOM05D000174 ORTHO05D037574 4.1e-09 66.6 335 26.3
SEGI_36820 Sequoiadendron giganteum HOM05D000174 ORTHO05D037574 4.1e-09 66.6 335 26.3
Actinidia23303 Actinidia chinensis HOM05D000174 ORTHO05D000630 5.4e-09 66.2 251 29.9
Cc01_g06930 Coffea canephora HOM05D000174 ORTHO05D000630 5.4e-09 66.2 280 26.8
Lj8C183G11 Lonicera japonica HOM05D000174 ORTHO05D000630 5.4e-09 66.2 298 27.2
MBI14_g12738_MAGBIO Magnolia biondii HOM05D000174 ORTHO05D000630 5.4e-09 66.2 277 25.6
Nitab4.5_0000205g0040 Nicotiana tabacum HOM05D059491 ORTHO05D000630 5.4e-09 66.2 335 24.5
THA.LOC104817725 Tarenaya hassleriana HOM05D000174 ORTHO05D000630 7.0e-09 65.9 327 26.3
Lsat_1_v5_gn_9_88600 Lactuca sativa HOM05D000174 ORTHO05D000630 9.1e-09 65.5 150 34.0
Oeu052027.2 Olea europaea HOM05D000784 ORTHO05D000116 1.2e-08 65.1 285 27.7
SGA_v2.0_scaffold7G03548 Striga asiatica HOM05D008543 ORTHO05D000630 1.6e-08 64.7 128 34.4
THA.LOC104811702 Tarenaya hassleriana HOM05D000174 ORTHO05D000630 1.6e-08 64.7 260 26.5
CDE03G0095 Ceratophyllum demersum HOM05D056667 ORTHO05D000630 2.0e-08 64.3 365 21.9
PGSC0003DMG400034376 Solanum tuberosum HOM05D000174 ORTHO05D000630 2.0e-08 64.3 270 25.6
Lalb_Chr17g0347691 Lupinus albus HOM05D008543 ORTHO05D000630 5.9e-08 62.8 32 71.9
CAN.G1085.7 Capsicum annuum HOM05D000174 ORTHO05D000630 7.7e-08 62.4 299 24.7
CiPaw.09G162100 Carya illinoinensis HOM05D000174 ORTHO05D000630 7.7e-08 62.4 94 37.2
Solyc07g066160.1 Solanum lycopersicum HOM05D011325 ORTHO05D000630 7.7e-08 62.4 353 24.1
ATR0751G124 Amborella trichopoda HOM05D010587 ORTHO05D001526 1.7e-07 61.2 38 65.8
HanXRQChr13g0409261 Helianthus annuus HOM05D000174 ORTHO05D000630 1.7e-07 61.2 296 27.0
Solyc11g072210.1 Solanum lycopersicum HOM05D000174 ORTHO05D000630 1.7e-07 61.2 279 24.4
ATR0874G001 Amborella trichopoda HOM05D010587 ORTHO05D000630 2.2e-07 60.8 32 71.9
ATR1101G089 Amborella trichopoda HOM05D010587 ORTHO05D000630 2.2e-07 60.8 32 71.9
arahy.Tifrunner.gnm1.ann1.YK7I6N Arachis hypogaea HOM05D008543 ORTHO05D000630 2.2e-07 60.8 303 27.7
DCAR_017611 Daucus carota HOM05D000174 ORTHO05D000630 3.8e-07 60.1 98 35.7
CiPaw.13G145500 Carya illinoinensis HOM05D008543 ORTHO05D000630 5.0e-07 59.7 43 53.5
MELO3C014059.2 Cucumis melo HOM05D014059 ORTHO05D001526 5.0e-07 59.7 46 50.0
ATR0069G047 Amborella trichopoda HOM05D010587 ORTHO05D000630 6.5e-07 59.3 39 61.5
Carub.0008s1652 Capsella rubella HOM05D000174 ORTHO05D000630 6.5e-07 59.3 259 30.9
Glyma.13G073300 Glycine max HOM05D022580 ORTHO05D000630 8.5e-07 58.9 78 39.7
Phvul.006G020000 Phaseolus vulgaris HOM05D022580 ORTHO05D000630 8.5e-07 58.9 36 61.1
CsaV3_3G003770 Cucumis sativus L. HOM05D014059 ORTHO05D001526 1.1e-06 58.5 46 50.0
MD11G1124800 Malus domestica HOM05D025829 ORTHO05D000630 1.1e-06 58.5 32 65.6
Prupe.6G093500 Prunus persica HOM05D025829 ORTHO05D000630 1.1e-06 58.5 39 56.4
PGR119G0147 Punica granatum HOM05D000174 ORTHO05D000630 1.1e-06 58.5 305 25.2
VMungo0540G2495 Vigna mungo HOM05D022580 ORTHO05D000630 1.5e-06 58.2 56 46.4
ATR1128G018 Amborella trichopoda HOM05D010587 ORTHO05D001526 1.9e-06 57.8 32 68.8
CARHR119210 Cardamine hirsuta HOM05D012084 ORTHO05D000630 1.9e-06 57.8 46 54.3
Glyma.20G047500 Glycine max HOM05D022580 ORTHO05D000630 1.9e-06 57.8 329 23.1
HanXRQChr03g0079361 Helianthus annuus HOM05D000174 ORTHO05D000630 1.9e-06 57.8 253 25.7
Sc08g0002310 Simmondsia chinensis HOM05D000174 ORTHO05D001526 1.9e-06 57.8 50 56.0
CDE02G3608 Ceratophyllum demersum HOM05D000174 ORTHO05D001526 2.5e-06 57.4 32 68.8
MD03G1110900 Malus domestica HOM05D025829 ORTHO05D000630 2.5e-06 57.4 47 51.1
Oeu025932.1 Olea europaea HOM05D011325 ORTHO05D000630 2.5e-06 57.4 305 24.9
QL07p014639 Quercus lobata HOM05D008543 ORTHO05D000630 2.5e-06 57.4 316 25.0
Zm00001eb199290 Zea mays HOM05D000174 ORTHO05D001526 2.5e-06 57.4 56 42.9
AL8G31830 Arabidopsis lyrata HOM05D000174 ORTHO05D000630 3.2e-06 57.0 260 28.5
ATR1101G093 Amborella trichopoda HOM05D010587 ORTHO05D000630 4.2e-06 56.6 32 65.6
Duzib170G0186 Durio zibethinus HOM05D008543 ORTHO05D000630 4.2e-06 56.6 46 47.8
Gohir.A08G009700 Gossypium hirsutum HOM05D008543 ORTHO05D000630 4.2e-06 56.6 43 51.2
Oeu032035.1 Olea europaea HOM05D011325 ORTHO05D000630 4.2e-06 56.6 246 26.8
PSO541G5961 Papaver somniferum HOM05D000174 ORTHO05D000630 4.2e-06 56.6 263 28.1
Duzib150G0090 Durio zibethinus HOM05D008543 ORTHO05D000630 5.5e-06 56.2 39 59.0
Gohir.D08G019750 Gossypium hirsutum HOM05D008543 ORTHO05D000630 5.5e-06 56.2 154 29.9
PSO675G1550 Papaver somniferum HOM05D000174 ORTHO05D000630 5.5e-06 56.2 235 27.7
AT2G26940 Arabidopsis thaliana HOM05D012084 ORTHO05D000630 7.2e-06 55.8 47 53.2
CANSAT54G2384 Cannabis sativa HOM05D008543 ORTHO05D000630 7.2e-06 55.8 242 24.4
ClCG00G006500 Citrullus lanatus HOM05D014059 ORTHO05D000630 7.2e-06 55.8 40 55.0
ClCG10G003810 Citrullus lanatus HOM05D014059 ORTHO05D019015 7.2e-06 55.8 40 55.0
ClCG10G003920 Citrullus lanatus HOM05D014059 ORTHO05D019015 7.2e-06 55.8 40 55.0
Haze_09916 Corylus avellana HOM05D000174 ORTHO05D000630 7.2e-06 55.8 32 68.8
Sabra15G0041100 Salix brachista HOM05D000174 ORTHO05D001526 7.2e-06 55.8 35 65.7
Sp4g08400 Schrenkiella parvula HOM05D012084 ORTHO05D000630 7.2e-06 55.8 32 65.6
Sed0013042 Sechium edule HOM05D000174 ORTHO05D001526 7.2e-06 55.8 135 28.1
Thecc.09G250700 Theobroma cacao HOM05D008543 ORTHO05D000630 7.2e-06 55.8 32 65.6
ATR1101G107 Amborella trichopoda HOM05D010587 ORTHO05D001526 9.5e-06 55.5 32 62.5
AL3G50040 Arabidopsis lyrata HOM05D000174 ORTHO05D001526 9.5e-06 55.5 47 46.8
BcaB03g16465 Brassica carinata HOM05D000174 ORTHO05D001526 9.5e-06 55.5 47 51.1
CiPaw.09G162000 Carya illinoinensis HOM05D000174 ORTHO05D000630 9.5e-06 55.5 44 50.0
CDE04G0195 Ceratophyllum demersum HOM05D001852 ORTHO05D001989 9.5e-06 55.5 32 65.6
ClCG02G003500 Citrullus lanatus HOM05D000174 ORTHO05D001526 9.5e-06 55.5 47 51.1
Duzib168G2176 Durio zibethinus HOM05D008543 ORTHO05D000630 9.5e-06 55.5 38 60.5
Sopen10g026890 Solanum pennellii HOM05D011325 ORTHO05D000630 9.5e-06 55.5 55 47.3


User provided reference genes

Program Settings