Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr09g0332711 Lupinus albus HOM05D001461 ORTHO05D005534 2.5e-62 241.9 117 100.0
arahy.Tifrunner.gnm1.ann1.Z0SXD6 Arachis hypogaea HOM05D001461 ORTHO05D005534 1.6e-56 222.6 117 90.6
Medtr5g009740 Medicago truncatula HOM05D001461 ORTHO05D005534 4.5e-56 221.1 117 89.7
arahy.Tifrunner.gnm1.ann1.PFJ4ZJ Arachis hypogaea HOM05D001461 ORTHO05D005534 1.3e-55 219.5 117 89.7
Psat2g033040 Pisum sativum HOM05D001461 ORTHO05D005534 2.9e-55 218.4 117 89.7
Glyma.01G223800 Glycine max HOM05D001461 ORTHO05D005534 3.8e-55 218.0 117 87.2
Dinv32542 Davidia involucrata HOM05D001461 ORTHO05D005534 5.0e-55 217.6 115 88.7
Atru.chr9.2071 Acer truncatum HOM05D001461 ORTHO05D005534 6.5e-55 217.2 114 89.5
FAN04G2189 Fragaria x ananassa HOM05D001461 ORTHO05D002801 3.2e-54 214.9 114 88.6
FAN08G0967 Fragaria x ananassa HOM05D001461 ORTHO05D005534 3.2e-54 214.9 114 88.6
Hma1.2p1_0384F.1_g140900 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 3.2e-54 214.9 115 88.7
Manes.02G014100 Manihot esculenta HOM05D001461 ORTHO05D005534 4.2e-54 214.5 116 87.1
TWI18G0300 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 4.2e-54 214.5 116 85.3
Actinidia10093 Actinidia chinensis HOM05D001461 ORTHO05D005534 7.2e-54 213.8 115 84.3
Glyma.11G019700 Glycine max HOM05D001461 ORTHO05D005534 7.2e-54 213.8 118 86.4
CANSAT21G0685 Cannabis sativa HOM05D001461 ORTHO05D005534 9.4e-54 213.4 114 89.5
COL.COLO4_21750 Corchorus olitorius HOM05D001461 ORTHO05D005534 9.4e-54 213.4 116 85.3
TPR.G6688 Trifolium pratense HOM05D001461 ORTHO05D005534 9.4e-54 213.4 117 86.3
TWI60G0303 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 9.4e-54 213.4 116 84.5
FAN13G1856 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.2e-53 213.0 114 87.7
Prupe.1G460500 Prunus persica HOM05D001461 ORTHO05D005534 1.2e-53 213.0 114 86.0
RcHm_v2.0_Chr6g0304921 Rosa chinensis HOM05D001461 ORTHO05D005534 1.2e-53 213.0 114 86.8
FvH4_5g03750 Fragaria vesca HOM05D001461 ORTHO05D005534 1.6e-53 212.6 114 87.7
RcHm_v2.0_Chr7g0195901 Rosa chinensis HOM05D001461 ORTHO05D005534 2.1e-53 212.2 114 86.0
Solyc11g062280.2 Solanum lycopersicum HOM05D001461 ORTHO05D005534 2.1e-53 212.2 115 87.8
Sopen11g024260 Solanum pennellii HOM05D001461 ORTHO05D005534 2.1e-53 212.2 115 87.8
PGSC0003DMG401032495 Solanum tuberosum HOM05D001461 ORTHO05D005534 2.1e-53 212.2 115 87.8
SGA_v2.0_scaffold4G02266 Striga asiatica HOM05D001461 ORTHO05D005534 2.1e-53 212.2 114 87.7
LjContig00312_ERROPOS870357g0027559 Lotus japonicus HOM05D001461 ORTHO05D005534 2.7e-53 211.8 115 87.0
Nitab4.5_0002026g0080 Nicotiana tabacum HOM05D001461 ORTHO05D005534 2.7e-53 211.8 115 86.1
Peaxi162Scf00029g02519 Petunia axillaris HOM05D001461 ORTHO05D005534 3.6e-53 211.5 115 86.1
Potri.003G135100 Populus trichocarpa HOM05D001461 ORTHO05D005534 3.6e-53 211.5 113 89.4
MSTRG.20880 Avicennia marina HOM05D001461 ORTHO05D005534 4.7e-53 211.1 114 86.8
CSS0041928 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 4.7e-53 211.1 114 85.1
PGR042G3251 Punica granatum HOM05D001461 ORTHO05D005534 4.7e-53 211.1 115 81.7
Lsat_1_v5_gn_7_2481 Lactuca sativa HOM05D001461 ORTHO05D005534 6.1e-53 210.7 114 85.1
Nn7g37350 Nelumbo nucifera HOM05D001461 ORTHO05D005534 6.1e-53 210.7 115 86.1
GSVIVG01019462001 Vitis vinifera HOM05D001461 ORTHO05D002801 6.1e-53 210.7 114 87.7
SGA_v2.0_scaffold95G28797 Striga asiatica HOM05D001461 ORTHO05D005534 8.0e-53 210.3 114 86.8
CiPaw.12G086700 Carya illinoinensis HOM05D001461 ORTHO05D005534 1.0e-52 209.9 114 86.8
FAN13G2166 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.0e-52 209.9 114 86.8
Phvul.002G161800 Phaseolus vulgaris HOM05D001461 ORTHO05D005534 1.0e-52 209.9 118 85.6
Hma1.2p1_0397F.1_g143760 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 1.8e-52 209.1 114 85.1
PGSC0003DMG400007048 Solanum tuberosum HOM05D001461 ORTHO05D005534 1.8e-52 209.1 115 85.2
Migut.E01260 Erythranthe guttata HOM05D001461 ORTHO05D005534 2.3e-52 208.8 114 84.2
MELO3C008160.2 Cucumis melo HOM05D001461 ORTHO05D005534 3.0e-52 208.4 114 87.7
CsaV3_2G033880 Cucumis sativus L. HOM05D001461 ORTHO05D005534 3.0e-52 208.4 114 87.7
LjContig00001g0001336 Lotus japonicus HOM05D001461 ORTHO05D005534 4.0e-52 208.0 117 85.5
LjContig00001g0023327 Lotus japonicus HOM05D001461 ORTHO05D005534 4.0e-52 208.0 117 85.5
VMungo1215G2099 Vigna mungo HOM05D001461 ORTHO05D005534 5.2e-52 207.6 118 84.7
CAN.G375.83 Capsicum annuum HOM05D001461 ORTHO05D005534 6.7e-52 207.2 115 84.3
ClCG11G007680 Citrullus lanatus HOM05D001461 ORTHO05D005534 6.7e-52 207.2 114 86.8
Migut.B01819 Erythranthe guttata HOM05D001461 ORTHO05D005534 6.7e-52 207.2 114 83.3
MD15G1108200 Malus domestica HOM05D001461 ORTHO05D005534 6.7e-52 207.2 114 85.1
Prupe.5G111900 Prunus persica HOM05D001461 ORTHO05D005534 1.5e-51 206.1 116 86.2
HanXRQChr04g0120651 Helianthus annuus HOM05D001461 ORTHO05D005534 2.0e-51 205.7 114 81.6
MBI07_g06330_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 2.6e-51 205.3 113 85.8
Thecc.03G290500 Theobroma cacao HOM05D001461 ORTHO05D005534 2.6e-51 205.3 114 83.3
ECA236G4284 Erigeron canadensis HOM05D001461 ORTHO05D005534 3.3e-51 204.9 114 84.2
Cc03_g08310 Coffea canephora HOM05D001461 ORTHO05D005534 4.4e-51 204.5 117 85.5
MBI15_g19879_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 5.7e-51 204.1 113 85.0
Gohir.A12G232000 Gossypium hirsutum HOM05D001461 ORTHO05D005534 7.5e-51 203.8 115 82.6
Gohir.D12G235300 Gossypium hirsutum HOM05D001461 ORTHO05D005534 7.5e-51 203.8 115 82.6
Gorai.008G251500 Gossypium raimondii HOM05D001461 ORTHO05D005534 7.5e-51 203.8 115 82.6
DCAR_025235 Daucus carota HOM05D001461 ORTHO05D005534 9.7e-51 203.4 116 80.2
Duzib084G0256 Durio zibethinus HOM05D001461 ORTHO05D005534 1.7e-50 202.6 114 81.6
Sed0013897 Sechium edule HOM05D001461 ORTHO05D005534 2.2e-50 202.2 113 85.0
ECA233G4373 Erigeron canadensis HOM05D001461 ORTHO05D005534 2.8e-50 201.8 119 80.7
Eucgr.E00823 Eucalyptus grandis HOM05D001461 ORTHO05D005534 1.1e-49 199.9 115 79.1
FAN18G4081 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.8e-49 199.1 113 81.4
PSO384G4702 Papaver somniferum HOM05D001461 ORTHO05D005534 1.8e-49 199.1 123 78.0
Sabra03G0097400 Salix brachista HOM05D001461 ORTHO05D005534 1.8e-49 199.1 125 77.6
CARHR046740 Cardamine hirsuta HOM05D001461 ORTHO05D005534 4.1e-49 198.0 116 80.2
unitig_62.g23802 Utricularia gibba HOM05D001461 ORTHO05D005534 7.0e-49 197.2 128 75.0
SalBow3G1410 Salvia bowleyana HOM05D001461 ORTHO05D005534 9.1e-49 196.8 115 81.7
ATR0580G205 Amborella trichopoda HOM05D001461 ORTHO05D005534 1.6e-48 196.1 112 83.9
CARHR212880 Cardamine hirsuta HOM05D001461 ORTHO05D005534 1.6e-48 196.1 114 79.8
Thecc.02G012600 Theobroma cacao HOM05D001461 ORTHO05D005534 2.0e-48 195.7 112 81.2
BcaC04g22537 Brassica carinata HOM05D001461 ORTHO05D005534 2.7e-48 195.3 114 79.8
C09p18050 Brassica napus HOM05D001461 ORTHO05D005534 2.7e-48 195.3 114 79.8
BolC9t54702H Brassica oleracea HOM05D001461 ORTHO05D005534 2.7e-48 195.3 114 79.8
Thhalv10023764m.g Eutrema salsugineum HOM05D001461 ORTHO05D005534 2.7e-48 195.3 114 79.8
Aa31LG2G1220 Aethionema arabicum HOM05D001461 ORTHO05D002801 3.5e-48 194.9 114 78.9
BcaB07g31442 Brassica carinata HOM05D001461 ORTHO05D005534 4.5e-48 194.5 114 78.9
BcaB07g31521 Brassica carinata HOM05D001461 ORTHO05D005534 4.5e-48 194.5 114 78.9
A09p14930 Brassica napus HOM05D001461 ORTHO05D005534 4.5e-48 194.5 114 78.9
BraA09t37138Z Brassica rapa HOM05D001461 ORTHO05D005534 4.5e-48 194.5 114 78.9
Thhalv10027655m.g Eutrema salsugineum HOM05D001461 ORTHO05D002801 4.5e-48 194.5 113 80.5
AT5G41650 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 5.9e-48 194.1 112 80.4
EL10Ac1g00327 Beta vulgaris HOM05D001461 ORTHO05D005534 7.7e-48 193.7 113 77.9
A09p14170 Brassica napus HOM05D001461 ORTHO05D005534 1.3e-47 193.0 114 78.1
BraA09t37065Z Brassica rapa HOM05D001461 ORTHO05D005534 1.3e-47 193.0 114 78.1
Zm00001eb376350 Zea mays HOM05D001461 ORTHO05D005534 1.7e-47 192.6 116 78.4
Zm00001eb376190 Zea mays HOM05D001461 ORTHO05D005534 2.2e-47 192.2 115 79.1
Zm00001eb376220 Zea mays HOM05D001461 ORTHO05D005534 2.2e-47 192.2 115 79.1
Zm00001eb376310 Zea mays HOM05D001461 ORTHO05D005534 2.2e-47 192.2 115 79.1
Zm00001eb376910 Zea mays HOM05D001461 ORTHO05D005534 2.2e-47 192.2 115 79.1
Zm00001eb376940 Zea mays HOM05D001461 ORTHO05D005534 2.2e-47 192.2 115 79.1
AT1G64185 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 3.8e-47 191.4 114 78.1
C09p17080 Brassica napus HOM05D001461 ORTHO05D005534 3.8e-47 191.4 114 77.2
BolC9t54606H Brassica oleracea HOM05D001461 ORTHO05D005534 3.8e-47 191.4 114 77.2
Carub.0002s0062 Capsella rubella HOM05D001461 ORTHO05D005534 3.8e-47 191.4 114 78.1
Aqoxy6G01758 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 5.0e-47 191.0 112 80.4
Zm00001eb376260 Zea mays HOM05D001461 ORTHO05D005534 1.1e-46 189.9 115 78.3
Aqoxy6G01756 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 1.5e-46 189.5 112 80.4
Os06g0158700 Oryza sativa ssp. japonica HOM05D001461 ORTHO05D005534 2.5e-46 188.7 114 77.2
AL2G10830 Arabidopsis lyrata HOM05D001461 ORTHO05D005534 3.2e-46 188.3 114 77.2
Rhsim07G0008500 Rhododendron simsii HOM05D001461 ORTHO05D005534 3.2e-46 188.3 165 60.0
Lj4g0014781 Lotus japonicus HOM05D001461 ORTHO05D005534 4.2e-46 188.0 115 81.7
SEGI_29517 Sequoiadendron giganteum HOM05D001461 ORTHO05D005534 4.2e-46 188.0 115 73.0
AUR62004435 Chenopodium quinoa HOM05D001461 ORTHO05D005534 9.4e-46 186.8 113 74.3
AUR62023513 Chenopodium quinoa HOM05D001461 ORTHO05D005534 9.4e-46 186.8 113 74.3
Lsat_1_v5_gn_5_108040 Lactuca sativa HOM05D001461 ORTHO05D005534 2.7e-45 185.3 113 78.8
Sc01g0003060 Simmondsia chinensis HOM05D001461 ORTHO05D005534 6.1e-45 184.1 115 76.5
Sed0026937 Sechium edule HOM05D001461 ORTHO05D005534 2.3e-44 182.2 115 77.4
Nitab4.5_0000492g0140 Nicotiana tabacum HOM05D001461 ORTHO05D005534 6.8e-44 180.6 99 86.9
CSS0015159 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 5.7e-43 177.6 98 85.7
CSS0025412 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 5.7e-43 177.6 98 85.7
Sc01g0010020 Simmondsia chinensis HOM05D001461 ORTHO05D005534 5.7e-43 177.6 117 71.8
Carub.0007s3383 Capsella rubella HOM05D001461 ORTHO05D005534 1.7e-42 176.0 112 74.1
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 6.3e-42 174.1 100 83.0
BcaC04g22646 Brassica carinata HOM05D001461 ORTHO05D005534 8.3e-42 173.7 130 66.2
FAN28G0268 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.1e-41 173.3 97 83.5
Lj4g0009029 Lotus japonicus HOM05D001461 ORTHO05D005534 1.1e-41 173.3 117 75.2
FvH4_5g27350 Fragaria vesca HOM05D001461 ORTHO05D005534 1.8e-41 172.6 97 83.5
Nitab4.5_0004629g0090 Nicotiana tabacum HOM05D001461 ORTHO05D005534 1.6e-40 169.5 121 71.9
TPR.G32972 Trifolium pratense HOM05D001461 ORTHO05D005534 1.6e-40 169.5 94 84.0
HPP92_002836 Vanilla planifolia HOM05D001461 ORTHO05D005534 1.3e-39 166.4 101 76.2
Migut.E01261 Erythranthe guttata HOM05D001461 ORTHO05D005534 1.2e-37 159.8 97 80.4
Pp3c1_2350 Physcomitrium patens HOM05D001461 ORTHO05D005534 5.2e-36 154.5 110 61.8
Hund27230 Selenicereus undatus HOM05D001461 ORTHO05D005534 3.4e-35 151.8 100 74.0
SMO364G0470 Selaginella moellendorffii HOM05D001461 ORTHO05D005534 7.5e-35 150.6 114 59.6
AagrBONN_evm.TU.Sc2ySwM_344.4522 Anthoceros agrestis HOM05D001461 ORTHO05D005534 1.3e-34 149.8 112 59.8
Ah.07g196880 Amaranthus hybridus HOM05D001461 ORTHO05D005534 6.3e-34 147.5 98 72.4
Mapoly0143s0026 Marchantia polymorpha HOM05D001461 ORTHO05D005534 5.0e-31 137.9 114 54.4
MD08G1128900 Malus domestica HOM05D001461 ORTHO05D005534 1.5e-30 136.3 95 70.5
Oeu054373.3 Olea europaea HOM05D000540 ORTHO05D000681 1.6e-24 116.3 62 87.1
arahy.Tifrunner.gnm1.ann1.F4HMTZ Arachis hypogaea HOM05D001461 ORTHO05D005534 2.7e-24 115.5 66 84.8
vmacro13208 Vaccinium macrocarpon HOM05D001461 ORTHO05D005534 3.5e-24 115.2 63 85.7
Lj9C594G4 Lonicera japonica HOM05D001461 ORTHO05D005534 1.3e-23 113.2 80 66.2
Zm00001eb376320 Zea mays HOM05D001461 ORTHO05D005534 1.3e-23 113.2 118 50.0
arahy.Tifrunner.gnm1.ann1.2LVS12 Arachis hypogaea HOM05D001461 ORTHO05D005534 2.3e-23 112.5 54 92.6
arahy.Tifrunner.gnm1.ann1.NAT0LD Arachis hypogaea HOM05D001461 ORTHO05D005534 3.0e-23 112.1 58 91.4
Ciclev10022889m.g Citrus clementina HOM05D001461 ORTHO05D005534 1.5e-22 109.8 62 83.9
FAN13G0962 Fragaria x ananassa HOM05D001461 ORTHO05D005534 2.5e-22 109.0 62 79.0
Glyma.06G264500 Glycine max HOM05D001461 ORTHO05D005534 2.5e-22 109.0 61 82.0
Glyma.05G213500 Glycine max HOM05D001461 ORTHO05D005534 7.3e-22 107.5 60 83.3
RcHm_v2.0_Chr5g0061641 Rosa chinensis HOM05D001461 ORTHO05D005534 1.6e-21 106.3 58 84.5
MD08G1130100 Malus domestica HOM05D001461 ORTHO05D005534 2.8e-21 105.5 158 41.8
Actinidia28489 Actinidia chinensis HOM05D001461 ORTHO05D005534 3.6e-21 105.1 120 49.2
Zm00001eb376250 Zea mays HOM05D001461 ORTHO05D005534 8.0e-21 104.0 57 84.2
QL02p032078 Quercus lobata HOM05D001461 ORTHO05D005534 1.4e-20 103.2 52 90.4
Oeu063667.1 Olea europaea HOM05D001461 ORTHO05D005534 4.0e-20 101.7 70 72.9
PRCOL_00003773 Prasinoderma coloniale HOM05D001461 ORTHO05D005534 1.5e-19 99.8 136 39.7
MCO07G452 Micromonas commoda HOM05D001461 ORTHO05D005534 2.0e-19 99.4 131 42.7
Cfa012281 Carpinus fangiana HOM05D001461 ORTHO05D005534 1.3e-18 96.7 50 88.0
MD14G1117200 Malus domestica HOM05D001461 ORTHO05D005534 1.3e-18 96.7 51 82.4
Glyma.08G020100 Glycine max HOM05D001461 ORTHO05D005534 3.3e-14 82.0 53 77.4
Solyc07g061860.3 Solanum lycopersicum HOM05D001461 ORTHO05D051078 3.4e-11 72.0 70 52.9
Sopen07g030150 Solanum pennellii HOM05D018748 ORTHO05D009630 3.2e-09 65.5 35 88.6
MD08G1129600 Malus domestica HOM05D001461 ORTHO05D005534 3.5e-08 62.0 98 42.9
Atru.chr9.2072 Acer truncatum HOM05D001461 ORTHO05D005534 2.5e-06 55.8 113 33.6


User provided reference genes

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