Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr09g0331711 Lupinus albus HOM05D006529 ORTHO05D008380 2.9e-24 114.4 57 100.0
Glyma.05G223900 Glycine max HOM05D006529 ORTHO05D008380 1.2e-14 82.4 45 86.7
Lalb_Chr05g0223501 Lupinus albus HOM05D006529 ORTHO05D008380 1.6e-14 82.0 45 88.9
Ca_17386_v3 Cicer arietinum L. HOM05D006529 ORTHO05D008380 1.8e-13 78.6 45 84.4
Glyma.08G031000 Glycine max HOM05D006529 ORTHO05D008380 8.8e-13 76.3 45 80.0
VMungo0251G0255 Vigna mungo HOM05D006529 ORTHO05D008380 1.9e-12 75.1 45 77.8
Lj4g0018594 Lotus japonicus HOM05D006529 ORTHO05D008380 5.7e-12 73.6 44 79.5
Psat7g019320 Pisum sativum HOM05D006529 ORTHO05D008380 5.7e-12 73.6 45 73.3
Cfa003138 Carpinus fangiana HOM05D006529 ORTHO05D008380 9.7e-12 72.8 45 71.1
QL02p063543 Quercus lobata HOM05D006529 ORTHO05D008380 4.8e-11 70.5 45 68.9
SGA_v2.0_scaffold210G42089 Striga asiatica HOM05D006529 ORTHO05D008380 4.8e-11 70.5 45 73.3
GSVIVG01015253001 Vitis vinifera HOM05D006529 ORTHO05D008380 4.8e-11 70.5 45 71.1
CiPaw.04G153200 Carya illinoinensis HOM05D006529 ORTHO05D008380 6.3e-11 70.1 45 68.9
Medtr8g101990 Medicago truncatula HOM05D006529 ORTHO05D008380 6.3e-11 70.1 45 73.3
Phvul.002G305700 Phaseolus vulgaris HOM05D006529 ORTHO05D008380 6.3e-11 70.1 45 73.3
PGR142G1231 Punica granatum HOM05D006529 ORTHO05D008380 6.3e-11 70.1 45 71.1
Dinv36729 Davidia involucrata HOM05D006529 ORTHO05D008380 1.8e-10 68.6 45 68.9
arahy.Tifrunner.gnm1.ann1.HB8I5Y Arachis hypogaea HOM05D006529 ORTHO05D008380 4.1e-10 67.4 44 68.2
arahy.Tifrunner.gnm1.ann1.YG2MQU Arachis hypogaea HOM05D006529 ORTHO05D008380 4.1e-10 67.4 44 68.2
TAR624G0297 Trochodendron aralioides HOM05D006529 ORTHO05D008380 4.1e-10 67.4 45 68.9
Ciclev10009577m.g Citrus clementina HOM05D006529 ORTHO05D008380 5.3e-10 67.0 45 68.9
Sp7g24240 Schrenkiella parvula HOM05D006529 ORTHO05D008380 5.3e-10 67.0 44 70.5
MSTRG.10586 Avicennia marina HOM05D006529 ORTHO05D008380 6.9e-10 66.6 45 66.7
Thhalv10026289m.g Eutrema salsugineum HOM05D006529 ORTHO05D008380 9.1e-10 66.2 44 70.5
FAN27G1398 Fragaria x ananassa HOM05D006529 ORTHO05D008380 9.1e-10 66.2 45 64.4
AUR62006831 Chenopodium quinoa HOM05D006529 ORTHO05D008380 1.2e-09 65.9 45 64.4
Cc06_g10920 Coffea canephora HOM05D006529 ORTHO05D008380 1.2e-09 65.9 45 68.9
Carub.0007s1471 Capsella rubella HOM05D006529 ORTHO05D008380 1.5e-09 65.5 44 70.5
AUR62000487 Chenopodium quinoa HOM05D006529 ORTHO05D008380 1.5e-09 65.5 45 62.2
FAN14G0658 Fragaria x ananassa HOM05D006529 ORTHO05D008380 1.5e-09 65.5 45 64.4
TWI63G1011 Tripterygium wilfordii HOM05D006529 ORTHO05D008380 1.5e-09 65.5 44 68.2
Aa31LG3G600 Aethionema arabicum HOM05D006529 ORTHO05D008380 2.0e-09 65.1 45 66.7
MD15G1202100 Malus domestica HOM05D006529 ORTHO05D008380 2.0e-09 65.1 45 64.4
MD02G1072300 Malus domestica HOM05D006529 ORTHO05D008380 2.6e-09 64.7 45 66.7
Manes.16G105400 Manihot esculenta HOM05D006529 ORTHO05D008380 2.6e-09 64.7 44 68.2
Prupe.7G215100 Prunus persica HOM05D006529 ORTHO05D008380 2.6e-09 64.7 45 66.7
SalBow1G6632 Salvia bowleyana HOM05D006529 ORTHO05D008380 2.6e-09 64.7 46 60.9
Atru.chr7.1518 Acer truncatum HOM05D006529 ORTHO05D008380 3.4e-09 64.3 45 66.7
CARHR233790 Cardamine hirsuta HOM05D006529 ORTHO05D008380 3.4e-09 64.3 44 65.9
A03p56550 Brassica napus HOM05D006529 ORTHO05D008380 4.5e-09 63.9 44 68.2
BraA03t14725Z Brassica rapa HOM05D006529 ORTHO05D008380 4.5e-09 63.9 44 68.2
CAN.G142.8 Capsicum annuum HOM05D006529 ORTHO05D008380 4.5e-09 63.9 45 64.4
FvH4_1g06740 Fragaria vesca HOM05D006529 ORTHO05D008380 4.5e-09 63.9 45 62.2
FAN19G1593 Fragaria x ananassa HOM05D006529 ORTHO05D008380 4.5e-09 63.9 45 62.2
FAN23G2505 Fragaria x ananassa HOM05D006529 ORTHO05D008380 4.5e-09 63.9 45 62.2
HanXRQChr09g0238511 Helianthus annuus HOM05D006529 ORTHO05D008380 5.9e-09 63.5 45 64.4
RcHm_v2.0_Chr2g0092481 Rosa chinensis HOM05D006529 ORTHO05D008380 5.9e-09 63.5 45 64.4
ClCG03G015880 Citrullus lanatus HOM05D006529 ORTHO05D008380 7.7e-09 63.2 45 64.4
HanXRQChr03g0061031 Helianthus annuus HOM05D006529 ORTHO05D008380 7.7e-09 63.2 48 58.3
Actinidia29893 Actinidia chinensis HOM05D006529 ORTHO05D008380 1.0e-08 62.8 45 62.2
Aqoxy199s004 Aquilegia oxysepala HOM05D006529 ORTHO05D008380 1.0e-08 62.8 45 57.8
Aqoxy7G01329 Aquilegia oxysepala HOM05D006529 ORTHO05D008380 1.0e-08 62.8 45 57.8
AL7G26720 Arabidopsis lyrata HOM05D006529 ORTHO05D008380 1.0e-08 62.8 44 65.9
BcaC06g32765 Brassica carinata HOM05D006529 ORTHO05D008380 1.0e-08 62.8 44 65.9
Nn8g38953 Nelumbo nucifera HOM05D006529 ORTHO05D008380 1.0e-08 62.8 45 66.7
Nitab4.5_0004011g0030 Nicotiana tabacum HOM05D006529 ORTHO05D008380 1.0e-08 62.8 45 62.2
THA.LOC104813489 Tarenaya hassleriana HOM05D006529 ORTHO05D008380 1.0e-08 62.8 44 65.9
Migut.K00572 Erythranthe guttata HOM05D006529 ORTHO05D008380 1.3e-08 62.4 45 64.4
COL.COLO4_18251 Corchorus olitorius HOM05D006529 ORTHO05D008380 1.7e-08 62.0 45 64.4
PSO063G6648 Papaver somniferum HOM05D006529 ORTHO05D008380 1.7e-08 62.0 45 57.8
PSO832G0687 Papaver somniferum HOM05D006529 ORTHO05D008380 1.7e-08 62.0 45 57.8
Thecc.09G094900 Theobroma cacao HOM05D006529 ORTHO05D008380 1.7e-08 62.0 45 66.7
Ah.06g190810 Amaranthus hybridus HOM05D006529 ORTHO05D008380 2.2e-08 61.6 45 62.2
CSS0046887 Camellia sinensis var. sinensis HOM05D006529 ORTHO05D008380 2.2e-08 61.6 45 60.0
CSS0016193 Camellia sinensis var. sinensis HOM05D006529 ORTHO05D008380 2.9e-08 61.2 45 60.0
ECA240G3812 Erigeron canadensis HOM05D006529 ORTHO05D008380 2.9e-08 61.2 45 64.4
Nitab4.5_0009098g0020 Nicotiana tabacum HOM05D006529 ORTHO05D008380 2.9e-08 61.2 46 58.7
Hund07265 Selenicereus undatus HOM05D006529 ORTHO05D008380 2.9e-08 61.2 45 60.0
Dinv42286 Davidia involucrata HOM05D006529 ORTHO05D008380 5.0e-08 60.5 55 54.5
Sc18g0001790 Simmondsia chinensis HOM05D006529 ORTHO05D008380 5.0e-08 60.5 45 64.4
Duzib150G0994 Durio zibethinus HOM05D006529 ORTHO05D008380 6.5e-08 60.1 45 64.4
Gohir.D05G029600 Gossypium hirsutum HOM05D006529 ORTHO05D008380 8.5e-08 59.7 45 62.2
Gorai.009G029800 Gossypium raimondii HOM05D006529 ORTHO05D008380 8.5e-08 59.7 45 62.2
Lsat_1_v5_gn_7_38121 Lactuca sativa HOM05D006529 ORTHO05D008380 8.5e-08 59.7 45 60.0
Oeu052123.2 Olea europaea HOM05D006529 ORTHO05D008380 8.5e-08 59.7 59 49.2
AT4G26240 Arabidopsis thaliana HOM05D006529 ORTHO05D008380 1.4e-07 58.9 44 61.4
CANSAT56G2962 Cannabis sativa HOM05D006529 ORTHO05D008380 1.4e-07 58.9 44 61.4
C07p54750 Brassica napus HOM05D006529 ORTHO05D008380 1.9e-07 58.5 44 63.6
BolC7t45964H Brassica oleracea HOM05D006529 ORTHO05D008380 1.9e-07 58.5 44 63.6
vmacro06269 Vaccinium macrocarpon HOM05D006529 ORTHO05D008380 2.5e-07 58.2 45 62.2
Gohir.A05G027800 Gossypium hirsutum HOM05D006529 ORTHO05D008380 3.2e-07 57.8 45 60.0
Eucgr.C00932 Eucalyptus grandis HOM05D006529 ORTHO05D008380 5.5e-07 57.0 45 55.6
Lj7C671T1 Lonicera japonica HOM05D006529 ORTHO05D008380 5.5e-07 57.0 58 50.0
Sed0011062 Sechium edule HOM05D006529 ORTHO05D008380 5.5e-07 57.0 45 62.2
DCAR_012008 Daucus carota HOM05D006529 ORTHO05D008380 1.6e-06 55.5 45 55.6
Os01g0559300 Oryza sativa ssp. japonica HOM05D006529 ORTHO05D008380 1.6e-06 55.5 45 60.0
SHI02792 Sapria himalayana HOM05D006529 ORTHO05D008380 2.1e-06 55.1 44 54.5
Zm00001eb356780 Zea mays HOM05D006529 ORTHO05D008380 2.1e-06 55.1 45 60.0
RcHm_v2.0_Chr7g0226351 Rosa chinensis HOM05D006529 ORTHO05D008380 2.7e-06 54.7 46 56.5
Sabra06G0122000 Salix brachista HOM05D006529 ORTHO05D008380 4.7e-06 53.9 45 57.8


User provided reference genes

Program Settings