Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 3.5e-138 495.0 254 100.0
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 2.7e-114 415.6 259 84.6
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 1.3e-100 370.2 249 79.9
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 1.7e-100 369.8 251 80.1
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 1.7e-100 369.8 253 82.2
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 1.8e-97 359.8 252 79.8
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 6.7e-97 357.8 249 79.5
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 8.8e-97 357.5 250 76.8
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 7.4e-96 354.4 250 76.4
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 9.7e-96 354.0 250 76.8
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 1.7e-95 353.2 249 77.1
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 1.7e-95 353.2 250 75.6
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 2.2e-95 352.8 250 77.2
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 2.2e-95 352.8 249 76.3
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 3.7e-95 352.1 251 76.1
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 4.8e-95 351.7 250 76.4
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 4.8e-95 351.7 249 76.3
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 1.2e-93 347.1 256 74.2
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 1.2e-93 347.1 250 74.8
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 1.5e-93 346.7 250 74.8
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 2.0e-93 346.3 252 74.2
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 2.6e-93 345.9 256 73.8
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 4.5e-93 345.1 251 75.3
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 1.0e-92 344.0 251 72.5
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.0e-92 344.0 250 76.0
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.2e-92 342.8 250 75.6
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 2.2e-92 342.8 251 75.7
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 5.0e-92 341.7 250 75.6
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 6.5e-92 341.3 255 74.1
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 6.5e-92 341.3 250 75.2
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 8.5e-92 340.9 251 74.5
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 4.2e-91 338.6 252 74.2
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 1.2e-90 337.0 253 72.7
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 1.2e-90 337.0 252 72.2
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 1.6e-90 336.7 256 71.1
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 1.6e-90 336.7 251 71.3
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.6e-90 336.7 250 72.0
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 2.7e-90 335.9 253 74.7
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 3.6e-90 335.5 254 71.7
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 4.7e-90 335.1 252 71.4
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 7.9e-90 334.3 250 72.8
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 1.0e-89 334.0 253 72.3
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 1.0e-89 334.0 255 73.3
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.4e-89 333.6 250 72.8
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 1.8e-89 333.2 252 71.4
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.3e-89 332.8 250 72.4
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 2.3e-89 332.8 249 73.9
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 3.0e-89 332.4 251 69.3
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 3.9e-89 332.0 252 70.6
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 5.1e-89 331.6 255 72.5
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 6.7e-89 331.3 252 72.6
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 8.8e-89 330.9 237 77.6
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 8.8e-89 330.9 252 70.2
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 1.1e-88 330.5 249 73.1
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 2.6e-88 329.3 252 70.6
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 5.7e-88 328.2 250 72.0
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 5.7e-88 328.2 252 70.2
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 9.7e-88 327.4 270 69.3
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 9.7e-88 327.4 253 73.9
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.3e-87 327.0 250 71.6
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 4.8e-87 325.1 218 77.1
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 6.3e-87 324.7 255 68.6
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 1.1e-86 323.9 250 70.4
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 2.4e-86 322.8 252 70.2
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 3.1e-86 322.4 250 71.2
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 3.1e-86 322.4 256 68.4
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 4.1e-86 322.0 250 71.2
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 4.1e-86 322.0 250 71.2
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 4.1e-86 322.0 250 71.2
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 5.3e-86 321.6 252 71.0
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 1.2e-85 320.5 250 70.4
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.0e-85 319.7 250 71.2
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.0e-85 319.7 250 70.8
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 2.6e-85 319.3 252 71.0
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.7e-84 316.6 249 70.3
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 2.2e-84 316.2 252 69.0
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 1.9e-83 313.2 252 67.1
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 2.5e-83 312.8 257 68.1
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 5.5e-83 311.6 238 70.2
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 7.2e-83 311.2 250 67.2
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 4.7e-82 308.5 250 65.6
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 4.7e-82 308.5 254 65.0
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 4.7e-82 308.5 253 66.0
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 6.1e-82 308.1 241 69.7
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 6.1e-82 308.1 241 69.7
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 6.1e-82 308.1 256 68.4
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 6.1e-82 308.1 257 66.9
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 8.0e-82 307.8 239 71.5
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 1.0e-81 307.4 250 65.2
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 1.0e-81 307.4 250 66.8
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 3.0e-81 305.8 250 65.2
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 4.0e-81 305.4 256 68.4
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 6.7e-81 304.7 250 65.2
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 1.1e-80 303.9 251 64.5
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 2.0e-80 303.1 252 64.7
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 2.0e-80 303.1 270 64.1
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 2.0e-80 303.1 250 65.2
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 2.6e-80 302.8 251 65.7
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 2.6e-80 302.8 204 74.5
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 3.3e-80 302.4 218 72.5
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 5.7e-80 301.6 254 65.7
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 1.3e-79 300.4 253 64.4
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 2.2e-79 299.7 250 65.2
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 2.8e-79 299.3 236 71.6
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 3.7e-79 298.9 237 69.2
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 8.2e-79 297.7 250 63.2
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 8.2e-79 297.7 252 63.5
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 8.2e-79 297.7 252 63.1
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 8.2e-79 297.7 238 68.9
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 1.1e-78 297.4 250 64.8
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 1.8e-78 296.6 255 65.5
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 1.6e-77 293.5 238 67.6
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 2.0e-77 293.1 251 64.9
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 2.7e-77 292.7 250 64.0
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 2.7e-77 292.7 313 56.9
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 7.7e-77 291.2 253 63.2
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 7.7e-77 291.2 256 63.7
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 7.7e-77 291.2 256 62.1
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 1.7e-76 290.0 253 63.2
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 1.7e-76 290.0 240 67.9
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 2.2e-76 289.7 244 65.2
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 5.0e-76 288.5 317 54.6
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 5.5e-75 285.0 257 62.6
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 5.5e-75 285.0 257 62.6
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 5.5e-75 285.0 257 62.6
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 9.4e-75 284.3 250 64.0
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 9.4e-75 284.3 224 67.9
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.2e-74 283.9 238 66.0
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 1.8e-73 280.0 254 60.2
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 4.0e-73 278.9 257 61.5
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 7.0e-70 268.1 319 53.0
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 5.0e-68 261.9 253 58.5
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 1.1e-67 260.8 259 56.4
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 2.7e-66 256.1 144 87.5
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 3.6e-66 255.8 254 57.9
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 1.7e-63 246.9 244 58.2
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 8.3e-63 244.6 240 57.9
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 1.8e-62 243.4 148 81.8
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 3.1e-62 242.7 238 58.8
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 3.8e-60 235.7 258 53.1
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 1.9e-59 233.4 135 84.4
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 5.6e-59 231.9 168 71.4
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 7.3e-59 231.5 168 71.4
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 4.7e-58 228.8 168 70.8
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 4.4e-56 222.2 251 51.4
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 3.0e-52 209.5 251 51.0
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 2.2e-47 193.4 200 57.5
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 1.9e-46 190.3 121 76.9
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 7.0e-46 188.3 117 82.9
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 4.6e-45 185.7 290 42.4
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 1.2e-42 177.6 279 44.1
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 6.2e-34 148.7 267 40.1
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 4.9e-31 139.0 262 36.6
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 1.2e-29 134.4 129 65.1
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 1.6e-26 124.0 131 59.5
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 4.0e-25 119.4 91 64.8
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 5.8e-24 115.5 101 71.3
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 9.9e-24 114.8 69 79.7
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 1.7e-23 114.0 91 58.2
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 1.0e-20 104.8 76 73.7
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 4.3e-19 99.4 76 69.7
Thhalv10015034m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 9.6e-19 98.2 92 63.0
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 5.3e-17 92.4 110 40.0
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 2.0e-16 90.5 128 42.2
PSO384G2334 Papaver somniferum HOM05D004155 ORTHO05D004837 1.3e-15 87.8 126 51.6
PGSC0003DMG400045666 Solanum tuberosum HOM05D004155 ORTHO05D004837 1.7e-15 87.4 92 53.3
ECA247G1153 Erigeron canadensis HOM05D004155 ORTHO05D004837 3.3e-11 73.2 95 50.5
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 4.0e-09 66.2 81 46.9
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 3.4e-08 63.2 148 32.4
SEGI_17945 Sequoiadendron giganteum HOM05D004155 ORTHO05D004837 3.4e-08 63.2 143 37.8


User provided reference genes

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