Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr09g0321911 Lupinus albus HOM05D003780 ORTHO05D004463 4.3e-79 297.7 134 100.0
Ca_24899_v3 Cicer arietinum L. HOM05D003780 ORTHO05D004463 5.7e-63 244.2 124 85.5
Lj2g0008626 Lotus japonicus HOM05D003780 ORTHO05D004463 5.7e-63 244.2 124 84.7
Medtr5g021530 Medicago truncatula HOM05D003780 ORTHO05D004463 5.7e-63 244.2 124 84.7
Psat2g155880 Pisum sativum HOM05D003780 ORTHO05D004463 2.2e-62 242.3 124 83.9
arahy.Tifrunner.gnm1.ann1.5Y5RJ5 Arachis hypogaea HOM05D003780 ORTHO05D004463 2.8e-62 241.9 123 84.6
TPR.G2383 Trifolium pratense HOM05D003780 ORTHO05D004463 4.1e-61 238.0 124 83.1
QL06p033947 Quercus lobata HOM05D003780 ORTHO05D004463 2.9e-59 231.9 123 78.9
Lj4g0017051 Lotus japonicus HOM05D003780 ORTHO05D004463 2.5e-58 228.8 126 83.3
Glyma.16G130900 Glycine max HOM05D003780 ORTHO05D004463 5.5e-58 227.6 124 80.6
Eucgr.J02399 Eucalyptus grandis HOM05D003780 ORTHO05D004463 1.2e-57 226.5 124 78.2
EL10As8g23845 Beta vulgaris HOM05D003780 ORTHO05D004463 1.6e-57 226.1 120 77.5
AUR62007654 Chenopodium quinoa HOM05D003780 ORTHO05D004463 2.1e-57 225.7 120 77.5
TAR376G0185 Trochodendron aralioides HOM05D003780 ORTHO05D004463 2.7e-57 225.3 124 77.4
Atru.chr3.771 Acer truncatum HOM05D003780 ORTHO05D004463 3.6e-57 224.9 121 79.3
PSO541G5535 Papaver somniferum HOM05D003780 ORTHO05D004463 3.6e-57 224.9 124 77.4
MD02G1110800 Malus domestica HOM05D003780 ORTHO05D004463 4.7e-57 224.6 121 76.0
Gohir.A11G177800 Gossypium hirsutum HOM05D003780 ORTHO05D004463 6.1e-57 224.2 124 75.8
GSVIVG01018819001 Vitis vinifera HOM05D003780 ORTHO05D004463 6.1e-57 224.2 121 78.5
Aqoxy6G02377 Aquilegia oxysepala HOM05D003780 ORTHO05D004463 8.0e-57 223.8 129 76.0
CSS0028269 Camellia sinensis var. sinensis HOM05D003780 ORTHO05D004463 8.0e-57 223.8 124 77.4
Duzib187G0337 Durio zibethinus HOM05D003780 ORTHO05D004463 8.0e-57 223.8 121 77.7
Gohir.D11G185500 Gossypium hirsutum HOM05D003780 ORTHO05D004463 8.0e-57 223.8 124 75.8
Gorai.007G197100 Gossypium raimondii HOM05D003780 ORTHO05D004463 8.0e-57 223.8 124 75.8
Manes.01G143200 Manihot esculenta HOM05D003780 ORTHO05D004463 8.0e-57 223.8 124 76.6
CSS0017089 Camellia sinensis var. sinensis HOM05D003780 ORTHO05D004463 1.0e-56 223.4 122 77.9
MD15G1248700 Malus domestica HOM05D003780 ORTHO05D004463 1.0e-56 223.4 118 78.8
Dinv40062 Davidia involucrata HOM05D003780 ORTHO05D004463 1.4e-56 223.0 116 81.9
Thecc.01G022600 Theobroma cacao HOM05D003780 ORTHO05D004463 1.4e-56 223.0 121 76.9
Hma1.2p1_0743F.1_g211480 Hydrangea macrophylla HOM05D003780 ORTHO05D004463 1.8e-56 222.6 124 77.4
Medtr8g076210 Medicago truncatula HOM05D003780 ORTHO05D004463 2.3e-56 222.2 124 78.2
Ca_22363_v3 Cicer arietinum L. HOM05D003780 ORTHO05D004463 3.0e-56 221.9 124 79.0
Cfa006947 Carpinus fangiana HOM05D003780 ORTHO05D004463 4.0e-56 221.5 124 75.0
Ciclev10025467m.g Citrus clementina HOM05D003780 ORTHO05D004463 4.0e-56 221.5 116 80.2
Psat4g097480 Pisum sativum HOM05D003780 ORTHO05D004463 5.2e-56 221.1 124 80.6
Cc07_g10460 Coffea canephora HOM05D003780 ORTHO05D004463 6.8e-56 220.7 124 74.2
PSO675G4130 Papaver somniferum HOM05D003780 ORTHO05D004463 6.8e-56 220.7 117 78.6
RcHm_v2.0_Chr2g0099781 Rosa chinensis HOM05D003780 ORTHO05D004463 6.8e-56 220.7 121 74.4
Glyma.16G130700 Glycine max HOM05D003780 ORTHO05D004463 8.8e-56 220.3 119 79.0
Prupe.7G165600 Prunus persica HOM05D003780 ORTHO05D004463 1.2e-55 219.9 118 77.1
Actinidia26076 Actinidia chinensis HOM05D003780 ORTHO05D004463 2.0e-55 219.2 116 81.0
Lalb_Chr05g0229921 Lupinus albus HOM05D003780 ORTHO05D004463 2.0e-55 219.2 124 78.2
Haze_03805 Corylus avellana HOM05D003780 ORTHO05D004463 2.6e-55 218.8 124 73.4
Cpa.g.sc6.218 Carica papaya HOM05D003780 ORTHO05D004463 3.4e-55 218.4 124 74.2
CiPaw.07G056300 Carya illinoinensis HOM05D003780 ORTHO05D004463 3.4e-55 218.4 123 74.8
CiPaw.08G135200 Carya illinoinensis HOM05D003780 ORTHO05D004463 3.4e-55 218.4 123 72.4
PGR102G0875 Punica granatum HOM05D003780 ORTHO05D004463 3.4e-55 218.4 124 76.6
Nn5g29227 Nelumbo nucifera HOM05D003780 ORTHO05D004463 4.4e-55 218.0 126 77.0
MSTRG.23285 Avicennia marina HOM05D003780 ORTHO05D004463 5.7e-55 217.6 119 77.3
Phvul.003G259700 Phaseolus vulgaris HOM05D003780 ORTHO05D004463 7.5e-55 217.2 124 77.4
CDE09G1412 Ceratophyllum demersum HOM05D003780 ORTHO05D004463 9.8e-55 216.9 118 77.1
Sed0002051 Sechium edule HOM05D003780 ORTHO05D004463 9.8e-55 216.9 119 76.5
Manes.02G101700 Manihot esculenta HOM05D003780 ORTHO05D004463 1.3e-54 216.5 124 74.2
CAN.G785.7 Capsicum annuum HOM05D003780 ORTHO05D004463 1.7e-54 216.1 118 74.6
Rhsim10G0214200 Rhododendron simsii HOM05D003780 ORTHO05D004463 1.7e-54 216.1 124 74.2
FAN26G1155 Fragaria x ananassa HOM05D003780 ORTHO05D004463 2.2e-54 215.7 121 73.6
MELO3C016371.2 Cucumis melo HOM05D003780 ORTHO05D004463 2.8e-54 215.3 119 74.8
FAN28G2406 Fragaria x ananassa HOM05D003780 ORTHO05D004463 2.8e-54 215.3 122 73.0
FvH4_1g12120 Fragaria vesca HOM05D003780 ORTHO05D004463 3.7e-54 214.9 121 73.6
Ah.03g141600 Amaranthus hybridus HOM05D003780 ORTHO05D004463 6.3e-54 214.2 120 73.3
BcaNung00751 Brassica carinata HOM05D003780 ORTHO05D004463 6.3e-54 214.2 123 75.6
C01p02740 Brassica napus HOM05D003780 ORTHO05D004463 6.3e-54 214.2 123 75.6
BolC1t00264H Brassica oleracea HOM05D003780 ORTHO05D004463 6.3e-54 214.2 123 75.6
CANSAT01G0600 Cannabis sativa HOM05D003780 ORTHO05D004463 6.3e-54 214.2 113 80.5
COL.COLO4_21956 Corchorus olitorius HOM05D003780 ORTHO05D004463 6.3e-54 214.2 120 75.8
Solyc03g033620.3 Solanum lycopersicum HOM05D003780 ORTHO05D004463 8.3e-54 213.8 116 77.6
A01p02560 Brassica napus HOM05D003780 ORTHO05D004463 1.1e-53 213.4 123 74.8
CARHR244600 Cardamine hirsuta HOM05D003780 ORTHO05D004463 1.1e-53 213.4 123 74.8
FAN19G1040 Fragaria x ananassa HOM05D003780 ORTHO05D004463 1.1e-53 213.4 123 72.4
Nitab4.5_0001912g0010 Nicotiana tabacum HOM05D003780 ORTHO05D004463 1.1e-53 213.4 117 75.2
Peaxi162Scf00010g00516 Petunia axillaris HOM05D003780 ORTHO05D004463 1.1e-53 213.4 115 78.3
CsaV3_4G005800 Cucumis sativus L. HOM05D003780 ORTHO05D004463 1.4e-53 213.0 119 73.9
Migut.H02478 Erythranthe guttata HOM05D003780 ORTHO05D004463 1.4e-53 213.0 118 77.1
unitig_60.g25535 Utricularia gibba HOM05D003780 ORTHO05D004463 1.4e-53 213.0 118 76.3
Duzib147G1231 Durio zibethinus HOM05D003780 ORTHO05D004463 1.8e-53 212.6 120 73.3
Sp7g33940 Schrenkiella parvula HOM05D003780 ORTHO05D004463 1.8e-53 212.6 123 74.0
Sed0025104 Sechium edule HOM05D003780 ORTHO05D004463 1.8e-53 212.6 116 76.7
Nitab4.5_0005814g0030 Nicotiana tabacum HOM05D003780 ORTHO05D004463 2.4e-53 212.2 117 74.4
Sc03g0003480 Simmondsia chinensis HOM05D003780 ORTHO05D004463 2.4e-53 212.2 119 74.8
Sopen03g006410 Solanum pennellii HOM05D003780 ORTHO05D004463 4.1e-53 211.5 116 76.7
Hund14033 Selenicereus undatus HOM05D003780 ORTHO05D004463 5.4e-53 211.1 120 75.0
TWI09G0133 Tripterygium wilfordii HOM05D003780 ORTHO05D004463 5.4e-53 211.1 121 73.6
BcaNung03015 Brassica carinata HOM05D003780 ORTHO05D004463 7.0e-53 210.7 123 73.2
C07p61590 Brassica napus HOM05D003780 ORTHO05D004463 7.0e-53 210.7 123 73.2
BolC7t46582H Brassica oleracea HOM05D003780 ORTHO05D004463 7.0e-53 210.7 123 73.2
ECA238G4346 Erigeron canadensis HOM05D003780 ORTHO05D004463 9.1e-53 210.3 121 73.6
BcaNung04791 Brassica carinata HOM05D003780 ORTHO05D004463 1.2e-52 209.9 123 73.2
Sabra07G0012400 Salix brachista HOM05D003780 ORTHO05D004463 1.2e-52 209.9 124 71.8
Thhalv10025043m.g Eutrema salsugineum HOM05D003780 ORTHO05D004463 1.6e-52 209.5 123 72.4
Gohir.D11G185400 Gossypium hirsutum HOM05D003780 ORTHO05D004463 2.0e-52 209.1 116 75.0
Gorai.007G197000 Gossypium raimondii HOM05D003780 ORTHO05D004463 2.0e-52 209.1 116 75.0
ATR0149G013 Amborella trichopoda HOM05D003780 ORTHO05D004463 2.7e-52 208.8 118 74.6
Carub.0007s0404 Capsella rubella HOM05D003780 ORTHO05D004463 2.7e-52 208.8 123 73.2
AL7G14860 Arabidopsis lyrata HOM05D003780 ORTHO05D004463 3.5e-52 208.4 123 72.4
Aa31LG6G13100 Aethionema arabicum HOM05D003780 ORTHO05D004463 4.5e-52 208.0 123 71.5
DCAR_025992 Daucus carota HOM05D003780 ORTHO05D004463 4.5e-52 208.0 145 64.1
TWI73G1264 Tripterygium wilfordii HOM05D003780 ORTHO05D004463 4.5e-52 208.0 118 73.7
A03p64110 Brassica napus HOM05D003780 ORTHO05D004463 5.9e-52 207.6 123 71.5
BraA03t15476Z Brassica rapa HOM05D003780 ORTHO05D004463 5.9e-52 207.6 123 71.5
HanXRQChr16g0531091 Helianthus annuus HOM05D003780 ORTHO05D004463 5.9e-52 207.6 124 70.2
Potri.007G015400 Populus trichocarpa HOM05D003780 ORTHO05D004463 1.3e-51 206.5 115 73.9
THA.LOC104807484 Tarenaya hassleriana HOM05D003780 ORTHO05D004463 1.7e-51 206.1 123 70.7
AT4G36195 Arabidopsis thaliana HOM05D003780 ORTHO05D004463 5.0e-51 204.5 123 70.7
Potri.007G015300 Populus trichocarpa HOM05D003780 ORTHO05D004463 5.0e-51 204.5 124 71.0
Sed0009086 Sechium edule HOM05D003780 ORTHO05D004463 6.5e-51 204.1 118 71.2
HanXRQChr14g0441661 Helianthus annuus HOM05D003780 ORTHO05D004463 8.5e-51 203.8 120 73.3
FAN23G1382 Fragaria x ananassa HOM05D003780 ORTHO05D004463 1.1e-50 203.4 144 62.5
BcaC04g22932 Brassica carinata HOM05D003780 ORTHO05D004463 1.5e-50 203.0 120 70.0
C09p13760 Brassica napus HOM05D003780 ORTHO05D004463 1.5e-50 203.0 120 70.0
BolC9t54265H Brassica oleracea HOM05D003780 ORTHO05D004463 1.5e-50 203.0 120 70.0
A09p11700 Brassica napus HOM05D003780 ORTHO05D004463 1.9e-50 202.6 120 70.0
CANSAT01G0314 Cannabis sativa HOM05D003780 ORTHO05D004463 5.5e-50 201.1 125 68.8
THA.LOC104804255 Tarenaya hassleriana HOM05D003780 ORTHO05D004463 5.5e-50 201.1 115 72.2
BcaB07g31688 Brassica carinata HOM05D003780 ORTHO05D004463 2.1e-49 199.1 120 68.3
AT4G36190 Arabidopsis thaliana HOM05D003780 ORTHO05D004463 2.7e-49 198.7 115 73.0
BraA09t36815Z Brassica rapa HOM05D003780 ORTHO05D004463 6.1e-49 197.6 120 68.3
Thhalv10022659m.g Eutrema salsugineum HOM05D003780 ORTHO05D004463 6.1e-49 197.6 119 65.5
HPP92_020998 Vanilla planifolia HOM05D003780 ORTHO05D004463 6.1e-49 197.6 117 72.6
BraA01t00242Z Brassica rapa HOM05D003780 ORTHO05D004463 8.0e-49 197.2 148 61.5
Os10g0511400 Oryza sativa ssp. japonica HOM05D003780 ORTHO05D004463 1.4e-48 196.4 117 69.2
Sabra07G0012300 Salix brachista HOM05D003780 ORTHO05D004463 6.8e-48 194.1 129 67.4
Sp3g31510 Schrenkiella parvula HOM05D003780 ORTHO05D004463 6.8e-48 194.1 120 66.7
ECA246G0901 Erigeron canadensis HOM05D003780 ORTHO05D004463 1.5e-47 193.0 124 66.1
AL3G51250 Arabidopsis lyrata HOM05D003780 ORTHO05D004463 5.7e-47 191.0 123 65.0
CARHR108560 Cardamine hirsuta HOM05D003780 ORTHO05D004463 1.7e-46 189.5 123 65.0
AT2G18080 Arabidopsis thaliana HOM05D003780 ORTHO05D004463 4.9e-46 188.0 123 64.2
Zm00001eb220420 Zea mays HOM05D003780 ORTHO05D004463 6.3e-46 187.6 119 64.7
Aa31LG8G15240 Aethionema arabicum HOM05D003780 ORTHO05D004463 8.3e-46 187.2 123 63.4
Carub.0003s3221 Capsella rubella HOM05D003780 ORTHO05D004463 8.3e-46 187.2 123 62.6
Gohir.A11G177601 Gossypium hirsutum HOM05D003780 ORTHO05D004463 7.0e-45 184.1 108 71.3
arahy.Tifrunner.gnm1.ann1.BM4PI5 Arachis hypogaea HOM05D003780 ORTHO05D004463 4.5e-44 181.4 91 84.6
Pp3c21_22560 Physcomitrium patens HOM05D003780 ORTHO05D004463 1.1e-42 176.8 119 63.0
AagrBONN_evm.TU.Sc2ySwM_344.4858 Anthoceros agrestis HOM05D003780 ORTHO05D004463 2.1e-41 172.6 119 63.0
TPR.G30059 Trifolium pratense HOM05D003780 ORTHO05D004463 4.7e-41 171.4 132 62.1
Lj2C464T1 Lonicera japonica HOM05D003780 ORTHO05D004463 9.8e-39 163.7 80 83.8
vmacro21907 Vaccinium macrocarpon HOM05D003780 ORTHO05D004463 1.7e-38 162.9 97 72.2
Lsat_1_v5_gn_3_73741 Lactuca sativa HOM05D003780 ORTHO05D004463 3.7e-38 161.8 114 62.3
Lsat_1_v5_gn_2_78501 Lactuca sativa HOM05D003780 ORTHO05D004463 4.9e-38 161.4 106 66.0
Mapoly0040s0090 Marchantia polymorpha HOM05D003780 ORTHO05D004463 4.1e-37 158.3 114 60.5
Hund16478 Selenicereus undatus HOM05D003780 ORTHO05D004463 9.2e-37 157.1 120 57.5
SMO201G0083 Selaginella moellendorffii HOM05D003780 ORTHO05D004463 4.6e-36 154.8 114 57.0
SGA_v2.0_scaffold2G01250 Striga asiatica HOM05D003780 ORTHO05D004463 5.9e-36 154.5 123 58.5
ClCG07G008330 Citrullus lanatus HOM05D003780 ORTHO05D004463 2.3e-35 152.5 86 72.1
SMO268G0007 Selaginella moellendorffii HOM05D003780 ORTHO05D004463 2.3e-35 152.5 114 57.0
AUR62043233 Chenopodium quinoa HOM05D003780 ORTHO05D004463 6.6e-35 151.0 75 82.7
Ah.02g124630 Amaranthus hybridus HOM05D003780 ORTHO05D004463 2.5e-34 149.1 120 58.3
SMO201G0038 Selaginella moellendorffii HOM05D003780 ORTHO05D004463 3.3e-34 148.7 114 55.3
SMO268G0003 Selaginella moellendorffii HOM05D003780 ORTHO05D004463 3.3e-34 148.7 114 56.1
HanXRQChr14g0436841 Helianthus annuus HOM05D003780 ORTHO05D004463 1.0e-27 127.1 86 67.4
SalBow8G1034 Salvia bowleyana HOM05D003780 ORTHO05D004463 3.9e-27 125.2 118 51.7
TPR.G30053 Trifolium pratense HOM05D003780 ORTHO05D004463 6.2e-25 117.9 137 49.6
SEGI_08580 Sequoiadendron giganteum HOM05D003780 ORTHO05D004463 1.3e-22 110.2 69 63.8
MD15G1248600 Malus domestica HOM05D003780 ORTHO05D004463 1.7e-22 109.8 64 67.2
BcaNung00750 Brassica carinata HOM05D003780 ORTHO05D004463 8.3e-22 107.5 67 64.2
Psat6g097480 Pisum sativum HOM05D003780 ORTHO05D004469 1.1e-21 107.1 60 78.3
SMO356G0195 Selaginella moellendorffii HOM05D003780 ORTHO05D004463 5.1e-19 98.2 80 55.0
SMO172G0049 Selaginella moellendorffii HOM05D003780 ORTHO05D004463 1.1e-18 97.1 74 55.4
HanXRQChr01g0018111 Helianthus annuus HOM05D003780 ORTHO05D004463 8.1e-17 90.9 51 74.5
SMO172G0059 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 6.8e-16 87.8 57 64.9
SMO198G0037 Selaginella moellendorffii HOM05D003780 ORTHO05D004463 1.6e-12 76.6 56 58.9
BcaNung04789 Brassica carinata HOM05D003780 ORTHO05D004463 3.3e-10 68.9 63 50.8
Phvul.003G260000 Phaseolus vulgaris HOM05D003780 ORTHO05D004463 6.2e-09 64.7 33 78.8
TPR.G36220 Trifolium pratense HOM05D003780 ORTHO05D004463 6.2e-09 64.7 33 81.8
Os10g0511600 Oryza sativa ssp. japonica HOM05D003780 ORTHO05D004463 8.1e-09 64.3 32 78.1
Psat7g108040 Pisum sativum HOM05D003780 ORTHO05D004463 6.4e-06 54.7 35 62.9


User provided reference genes

Program Settings