Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr09g0321611 Lupinus albus HOM05D005052 ORTHO05D006226 8.4e-249 863.2 434 100.0
Lalb_Chr05g0212261 Lupinus albus HOM05D005052 ORTHO05D006226 5.3e-219 764.2 437 89.7
VMungo1215G2918 Vigna mungo HOM05D005052 ORTHO05D006226 7.0e-203 710.7 441 82.8
Glyma.11G078700 Glycine max HOM05D005052 ORTHO05D006226 3.8e-201 704.9 391 89.5
arahy.Tifrunner.gnm1.ann1.1KVD1S Arachis hypogaea HOM05D005052 ORTHO05D006226 2.5e-200 702.2 387 91.0
arahy.Tifrunner.gnm1.ann1.PYN71E Arachis hypogaea HOM05D005052 ORTHO05D006226 2.5e-200 702.2 387 91.0
Ca_24920_v3 Cicer arietinum L. HOM05D005052 ORTHO05D006226 2.5e-200 702.2 437 82.8
Glyma.01G164300 Glycine max HOM05D005052 ORTHO05D006226 2.7e-199 698.7 440 82.0
Psat2g153160 Pisum sativum HOM05D005052 ORTHO05D006226 1.0e-198 696.8 444 82.0
Phvul.002G106700 Phaseolus vulgaris HOM05D005052 ORTHO05D006226 6.7e-198 694.1 443 81.5
CiPaw.08G130500 Carya illinoinensis HOM05D005052 ORTHO05D006226 3.3e-197 691.8 391 87.7
Medtr5g022580 Medicago truncatula HOM05D005052 ORTHO05D006226 3.3e-197 691.8 427 83.1
CiPaw.07G061100 Carya illinoinensis HOM05D005052 ORTHO05D006226 3.7e-196 688.3 387 87.9
Lj2g0011110 Lotus japonicus HOM05D005052 ORTHO05D006226 4.8e-196 688.0 456 78.7
TPR.G10542 Trifolium pratense HOM05D005052 ORTHO05D006226 8.2e-196 687.2 436 81.0
MELO3C013755.2 Cucumis melo HOM05D005052 ORTHO05D006226 1.4e-195 686.4 395 85.8
Dinv40116 Davidia involucrata HOM05D005052 ORTHO05D006226 1.8e-195 686.0 409 83.9
CsaV3_3G000670 Cucumis sativus L. HOM05D005052 ORTHO05D006226 3.1e-195 685.3 395 85.6
GSVIVG01018732001 Vitis vinifera HOM05D005052 ORTHO05D006226 2.7e-194 682.2 387 88.1
Prupe.7G171600 Prunus persica HOM05D005052 ORTHO05D006226 4.5e-194 681.4 390 86.4
DCAR_022909 Daucus carota HOM05D005052 ORTHO05D006226 5.9e-194 681.0 387 87.6
TWI53G1960 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 1.0e-193 680.2 382 88.2
Lj4A222T51 Lonicera japonica HOM05D005052 ORTHO05D006226 1.3e-193 679.9 467 76.9
vmacro18426 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 1.3e-193 679.9 384 87.2
ClCG10G000590 Citrullus lanatus HOM05D005052 ORTHO05D006226 2.9e-193 678.7 395 85.3
COL.COLO4_22462 Corchorus olitorius HOM05D005052 ORTHO05D006226 1.1e-192 676.8 448 78.1
Rhsim08G0032100 Rhododendron simsii HOM05D005052 ORTHO05D006226 1.9e-192 676.0 391 84.9
Actinidia22954 Actinidia chinensis HOM05D005052 ORTHO05D006226 2.5e-192 675.6 378 88.9
Cpa.g.sc6.286 Carica papaya HOM05D005052 ORTHO05D006226 2.5e-192 675.6 414 82.4
Migut.C00533 Erythranthe guttata HOM05D005052 ORTHO05D006226 3.2e-192 675.2 434 79.5
Nn5g28565 Nelumbo nucifera HOM05D005052 ORTHO05D006226 9.4e-192 673.7 397 84.1
Cfa007001 Carpinus fangiana HOM05D005052 ORTHO05D006226 1.2e-191 673.3 449 77.7
TWI09G1579 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 1.2e-191 673.3 450 77.6
Eucgr.J02467 Eucalyptus grandis HOM05D005052 ORTHO05D006226 1.6e-191 672.9 384 87.0
Gohir.D12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 1.6e-191 672.9 447 78.1
QL06p051082 Quercus lobata HOM05D005052 ORTHO05D006226 1.6e-191 672.9 426 81.0
Haze_03731 Corylus avellana HOM05D005052 ORTHO05D006226 2.1e-191 672.5 463 76.2
Gohir.A12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 1.0e-190 670.2 447 78.1
MD15G1242600 Malus domestica HOM05D005052 ORTHO05D006226 1.0e-190 670.2 387 85.8
Sed0003793 Sechium edule HOM05D005052 ORTHO05D006226 1.4e-190 669.8 444 77.5
FAN28G0876 Fragaria x ananassa HOM05D005052 ORTHO05D006226 2.3e-190 669.1 443 77.4
Nn1g06262 Nelumbo nucifera HOM05D005052 ORTHO05D006226 3.0e-190 668.7 423 80.6
Thecc.01G014600 Theobroma cacao HOM05D005052 ORTHO05D006226 3.0e-190 668.7 452 77.7
PSO541G6199 Papaver somniferum HOM05D005052 ORTHO05D006226 5.2e-190 667.9 391 85.7
FvH4_1g11430 Fragaria vesca HOM05D005052 ORTHO05D006226 6.8e-190 667.5 443 77.4
Atru.chr3.855 Acer truncatum HOM05D005052 ORTHO05D006226 1.2e-189 666.8 403 81.9
Oeu048477.1 Olea europaea HOM05D005052 ORTHO05D006226 1.2e-189 666.8 386 86.3
RcHm_v2.0_Chr2g0099021 Rosa chinensis HOM05D005052 ORTHO05D006226 1.2e-189 666.8 447 77.2
Gorai.008G062200 Gossypium raimondii HOM05D005052 ORTHO05D006226 1.5e-189 666.4 448 77.7
HanXRQChr13g0424561 Helianthus annuus HOM05D005052 ORTHO05D006226 1.5e-189 666.4 434 79.0
CANSAT25G2560 Cannabis sativa HOM05D005052 ORTHO05D006226 2.0e-189 666.0 390 85.6
FAN23G2381 Fragaria x ananassa HOM05D005052 ORTHO05D006226 2.0e-189 666.0 445 77.3
PGR102G0465 Punica granatum HOM05D005052 ORTHO05D006226 2.6e-189 665.6 434 78.8
Cc07_g11060 Coffea canephora HOM05D005052 ORTHO05D006226 5.7e-189 664.5 433 78.8
ECA240G3065 Erigeron canadensis HOM05D005052 ORTHO05D006226 5.7e-189 664.5 430 80.2
FAN19G0738 Fragaria x ananassa HOM05D005052 ORTHO05D006226 7.5e-189 664.1 443 77.7
Sc03g0003700 Simmondsia chinensis HOM05D005052 ORTHO05D006226 1.3e-188 663.3 446 77.1
SGA_v2.0_scaffold94G28549 Striga asiatica HOM05D005052 ORTHO05D006226 1.7e-188 662.9 448 77.0
PSO675G6089 Papaver somniferum HOM05D005052 ORTHO05D006226 2.2e-188 662.5 391 85.2
Peaxi162Scf00328g00523 Petunia axillaris HOM05D005052 ORTHO05D006226 8.3e-188 660.6 389 84.1
Nitab4.5_0008943g0020 Nicotiana tabacum HOM05D005052 ORTHO05D006226 1.1e-187 660.2 434 77.9
Sabra05G0090900 Salix brachista HOM05D005052 ORTHO05D006226 1.1e-187 660.2 451 77.4
Duzib147G0491 Durio zibethinus HOM05D005052 ORTHO05D006226 1.4e-187 659.8 444 77.7
BolC9t54093H Brassica oleracea HOM05D005052 ORTHO05D006226 1.8e-187 659.4 436 77.8
Potri.005G110900 Populus trichocarpa HOM05D005052 ORTHO05D006226 1.8e-187 659.4 449 77.5
TAR381G1626 Trochodendron aralioides HOM05D005052 ORTHO05D006226 2.4e-187 659.1 388 85.3
BcaB04g20124 Brassica carinata HOM05D005052 ORTHO05D006226 3.1e-187 658.7 436 77.5
Nitab4.5_0001892g0080 Nicotiana tabacum HOM05D005052 ORTHO05D006226 4.1e-187 658.3 434 77.6
MSTRG.2728 Avicennia marina HOM05D005052 ORTHO05D006226 7.0e-187 657.5 431 78.0
A09p10150 Brassica napus HOM05D005052 ORTHO05D006226 2.0e-186 656.0 435 78.4
BraA09t36659Z Brassica rapa HOM05D005052 ORTHO05D006226 2.7e-186 655.6 439 77.4
FAN26G3360 Fragaria x ananassa HOM05D005052 ORTHO05D006226 2.7e-186 655.6 455 75.4
BcaC04g23113 Brassica carinata HOM05D005052 ORTHO05D006226 4.5e-186 654.8 443 76.3
C09p12030 Brassica napus HOM05D005052 ORTHO05D006226 4.5e-186 654.8 443 76.3
THA.LOC104821339 Tarenaya hassleriana HOM05D005052 ORTHO05D006226 5.9e-186 654.4 445 76.0
Sopen02g028370 Solanum pennellii HOM05D005052 ORTHO05D006226 7.7e-186 654.1 388 83.8
SalBow3G4284 Salvia bowleyana HOM05D005052 ORTHO05D006226 1.3e-185 653.3 445 76.4
Solyc02g083590.3 Solanum lycopersicum HOM05D005052 ORTHO05D006226 1.7e-185 652.9 388 83.8
AL8G45470 Arabidopsis lyrata HOM05D005052 ORTHO05D006226 2.3e-185 652.5 439 77.0
CAN.G1274.31 Capsicum annuum HOM05D005052 ORTHO05D006226 5.0e-185 651.4 388 83.0
Gorai.007G192400 Gossypium raimondii HOM05D005052 ORTHO05D006226 6.6e-185 651.0 420 79.3
Sp2g30570 Schrenkiella parvula HOM05D005052 ORTHO05D006226 6.6e-185 651.0 402 82.1
AT5G66120 Arabidopsis thaliana HOM05D005052 ORTHO05D006226 1.1e-184 650.2 429 78.1
Carub.0008s2837 Capsella rubella HOM05D005052 ORTHO05D006226 1.1e-184 650.2 437 76.7
CARHR281630 Cardamine hirsuta HOM05D005052 ORTHO05D006226 1.1e-184 650.2 435 76.6
PGSC0003DMG400003582 Solanum tuberosum HOM05D005052 ORTHO05D006226 1.5e-184 649.8 396 81.6
AUR62003338 Chenopodium quinoa HOM05D005052 ORTHO05D006226 5.5e-184 647.9 409 80.7
Thhalv10004219m.g Eutrema salsugineum HOM05D005052 ORTHO05D006226 7.2e-184 647.5 438 75.8
MBI05_g23388_MAGBIO Magnolia biondii HOM05D005052 ORTHO05D006226 1.2e-183 646.7 450 74.4
vmacro22193 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 6.1e-183 644.4 512 69.7
Gohir.D11G180500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 1.8e-182 642.9 378 84.9
AUR62029500 Chenopodium quinoa HOM05D005052 ORTHO05D006226 4.0e-182 641.7 391 82.1
Hund16503 Selenicereus undatus HOM05D005052 ORTHO05D006226 8.9e-182 640.6 454 73.8
ATR0712G043 Amborella trichopoda HOM05D005052 ORTHO05D006226 1.2e-181 640.2 384 81.5
Aqoxy4G02022 Aquilegia oxysepala HOM05D005052 ORTHO05D006226 5.7e-181 637.9 366 85.0
Os09g0539100 Oryza sativa ssp. japonica HOM05D005052 ORTHO05D006226 3.7e-180 635.2 384 82.0
Zm00001eb103800 Zea mays HOM05D005052 ORTHO05D006226 1.1e-179 633.6 387 81.4
Aa31LG1G14600 Aethionema arabicum HOM05D005052 ORTHO05D006226 1.8e-179 632.9 379 82.6
HPP92_025914 Vanilla planifolia HOM05D005052 ORTHO05D006226 3.5e-178 628.6 385 79.0
Gohir.A11G173500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 1.7e-177 626.3 385 82.1
HPP92_025909 Vanilla planifolia HOM05D005052 ORTHO05D006226 2.3e-177 625.9 385 78.7
CSS0012363 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 2.0e-170 602.8 328 91.5
Ciclev10025711m.g Citrus clementina HOM05D005052 ORTHO05D006226 1.5e-168 596.7 408 75.7
Pp3c13_24150 Physcomitrium patens HOM05D005052 ORTHO05D006226 2.8e-167 592.4 390 73.6
SMO228G0049 Selaginella moellendorffii HOM05D005052 ORTHO05D006226 5.2e-166 588.2 363 78.0
Mapoly0031s0094 Marchantia polymorpha HOM05D005052 ORTHO05D006226 1.2e-165 587.0 386 73.6
AagrBONN_evm.TU.Sc2ySwM_340.387 Anthoceros agrestis HOM05D005052 ORTHO05D006226 9.8e-165 583.9 385 73.2
DCAR_004732 Daucus carota HOM05D005052 ORTHO05D006226 4.3e-160 568.5 418 70.3
Zm00001eb331970 Zea mays HOM05D005052 ORTHO05D006226 5.6e-160 568.2 370 77.8
Actinidia28717 Actinidia chinensis HOM05D005052 ORTHO05D006226 1.2e-159 567.0 430 71.4
Lsat_1_v5_gn_3_125660 Lactuca sativa HOM05D005052 ORTHO05D006226 1.6e-154 550.1 433 69.5
CBR_g10969 Chara braunii HOM05D005052 ORTHO05D006226 1.9e-152 543.1 395 68.9
Actinidia17421 Actinidia chinensis HOM05D005052 ORTHO05D006226 5.8e-149 531.6 287 90.6
Cre08.g368950 Chlamydomonas reinhardtii HOM05D005052 ORTHO05D006226 7.3e-144 514.6 370 68.1
EL10Ac6g15523 Beta vulgaris HOM05D005052 ORTHO05D006226 1.4e-142 510.4 468 60.7
CDE04G1415 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 2.9e-140 502.7 287 84.0
MCO01G625 Micromonas commoda HOM05D005052 ORTHO05D006226 5.1e-137 491.9 364 64.6
Hma1.2p1_0315F.1_g122330 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 6.6e-137 491.5 375 70.4
Ah.03g149130 Amaranthus hybridus HOM05D005052 ORTHO05D006226 3.2e-131 472.6 277 86.6
PRCOL_00000314 Prasinoderma coloniale HOM05D005052 ORTHO05D006226 4.6e-130 468.8 364 63.7
Manes.02G107200 Manihot esculenta HOM05D005052 ORTHO05D006226 3.3e-128 462.6 333 74.5
Dinv33661 Davidia involucrata HOM05D005052 ORTHO05D006226 4.6e-122 442.2 233 92.3
SEGI_14262 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 4.5e-117 425.6 308 69.8
Hma1.2p1_2620F.1_g325580 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 1.1e-112 411.0 450 55.3
CDE02G2775 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 1.4e-110 404.1 312 67.9
SEGI_08539 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.5e-96 357.5 224 76.8
CDE02G1558 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 7.7e-85 318.5 256 65.6
Lsat_1_v5_gn_0_46241 Lactuca sativa HOM05D005052 ORTHO05D006226 8.3e-79 298.5 299 49.2
TPR.G6592 Trifolium pratense HOM05D005052 ORTHO05D006226 4.1e-78 296.2 273 60.4
SGA_v2.0_scaffold273G46395 Striga asiatica HOM05D005052 ORTHO05D006226 4.5e-77 292.7 225 64.4
RcHm_v2.0_Chr2g0099011 Rosa chinensis HOM05D005052 ORTHO05D006226 1.2e-72 278.1 246 60.2
unitig_699.g19702 Utricularia gibba HOM05D005052 ORTHO05D006226 6.3e-71 272.3 161 82.6
Haze_27270 Corylus avellana HOM05D005052 ORTHO05D006226 1.7e-68 264.2 355 43.1
Dinv33662 Davidia involucrata HOM05D005052 ORTHO05D006226 7.0e-54 215.7 139 79.1
Cfa024476 Carpinus fangiana HOM05D003566 ORTHO05D126353 4.6e-53 213.0 336 40.8
Rhsim07G0143100 Rhododendron simsii HOM05D005052 ORTHO05D006226 6.8e-49 199.1 184 62.5
SEGI_40904 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 2.1e-45 187.6 113 76.1
unitig_699.g19703 Utricularia gibba HOM05D005052 ORTHO05D006226 6.0e-45 186.0 147 67.3
SEGI_17140 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 5.1e-28 129.8 83 69.9
SEGI_34573 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 5.1e-28 129.8 83 69.9
Ah.03g149140 Amaranthus hybridus HOM05D000441 ORTHO05D000340 6.6e-28 129.4 77 77.9
MD02G1126200 Malus domestica HOM05D005052 ORTHO05D006226 5.6e-27 126.3 129 56.6
MD14G1099300 Malus domestica HOM05D005052 ORTHO05D006226 5.6e-27 126.3 129 56.6
Rhsim07G0135500 Rhododendron simsii HOM05D005052 ORTHO05D006226 4.2e-22 110.2 71 76.1
DCAR_004721 Daucus carota HOM05D005052 ORTHO05D006226 1.6e-21 108.2 113 51.3
SEGI_22853 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.1e-19 102.1 69 66.7
CDE04G1456 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 5.6e-19 99.8 129 50.4
Rhsim07G0135600 Rhododendron simsii HOM05D005052 ORTHO05D339393 1.6e-10 71.6 56 66.1
CSS0040013 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 3.4e-08 63.9 35 82.9


User provided reference genes

Program Settings